Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86801 * 119.99897 * 2 1 4 4 H 1.48498 * 109.47057 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47041 * 120.00212 * 3 2 1 6 6 H 1.48505 * 109.47107 * 240.00079 * 3 2 1 7 7 C 1.39946 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99952 * 204.06104 * 7 2 1 9 9 C 1.41395 * 119.99813 * 24.05619 * 7 2 1 10 10 C 1.40734 * 120.24500 * 30.07634 * 9 7 2 11 11 C 1.37598 * 119.74413 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.25197 * 0.02562 * 11 10 9 13 13 C 1.38619 * 120.49822 * 359.97438 * 12 11 10 14 14 C 1.37634 * 120.24686 * 359.67598 * 13 12 11 15 15 C 1.50699 * 120.12796 * 180.31451 * 14 13 12 16 16 C 1.52999 * 109.46807 * 64.96105 * 15 14 13 17 17 C 1.52999 * 109.47170 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47375 * 60.00114 * 17 16 15 19 19 C 1.52999 * 109.46878 * 300.00065 * 18 17 16 20 20 C 1.52998 * 109.47568 * 304.96323 * 15 14 13 21 21 H 0.96999 * 120.00481 * 186.54837 * 1 2 3 22 22 H 1.08004 * 120.12854 * 359.97438 * 10 9 7 23 23 H 1.08007 * 119.87454 * 179.97438 * 11 10 9 24 24 H 1.08001 * 119.75012 * 179.97438 * 12 11 10 25 25 H 1.08003 * 119.87371 * 179.97438 * 13 12 11 26 26 H 1.09004 * 109.47270 * 184.96186 * 15 14 13 27 27 H 1.08994 * 109.47292 * 299.99970 * 16 15 14 28 28 H 1.08999 * 109.47252 * 60.00455 * 16 15 14 29 29 H 1.09004 * 109.47100 * 300.00200 * 17 16 15 30 30 H 1.09003 * 109.47286 * 180.02562 * 17 16 15 31 31 H 1.09006 * 109.47578 * 180.02562 * 18 17 16 32 32 H 1.09004 * 109.46937 * 59.99985 * 18 17 16 33 33 H 1.08994 * 109.47292 * 299.99826 * 19 18 17 34 34 H 1.08999 * 109.47252 * 179.97438 * 19 18 17 35 35 H 1.08996 * 109.46870 * 300.00127 * 20 15 14 36 36 H 1.09004 * 109.46937 * 59.99659 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7464 0.0006 5 1 3.0960 1.6964 1.2125 6 1 3.0959 1.6964 -1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0176 -1.2528 0.3808 9 6 1.3930 -2.3831 -0.5002 10 6 0.4283 -2.2967 -1.5212 11 6 -0.1632 -3.4431 -2.0002 12 6 0.1876 -4.6797 -1.4805 13 6 1.1365 -4.7766 -0.4747 14 6 1.7463 -3.6439 0.0146 15 6 2.7828 -3.7530 1.1031 16 6 4.0016 -4.5106 0.5727 17 6 5.0542 -4.6209 1.6776 18 6 4.4642 -5.3755 2.8706 19 6 3.2454 -4.6179 3.4011 20 6 2.1924 -4.5080 2.2958 21 1 -0.4851 -0.8345 0.0958 22 1 0.1533 -1.3345 -1.9272 23 1 -0.9041 -3.3792 -2.7835 24 1 -0.2821 -5.5742 -1.8622 25 1 1.4018 -5.7450 -0.0769 26 1 3.0848 -2.7543 1.4187 27 1 3.6996 -5.5092 0.2571 28 1 4.4223 -3.9728 -0.2769 29 1 5.3561 -3.6220 1.9928 30 1 5.9227 -5.1602 1.2995 31 1 5.2139 -5.4537 3.6580 32 1 4.1623 -6.3743 2.5554 33 1 3.5473 -3.6191 3.7162 34 1 2.8248 -5.1557 4.2507 35 1 1.3241 -3.9683 2.6736 36 1 1.8904 -5.5066 1.9802 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044369422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = -26.189656 kcal Electronic energy + Delta-G solvation = -16145.061196 eV Core-core repulsion = 13784.635100 eV Total energy + Delta-G solvation = -2360.426096 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.79947 -36.86775 -33.77021 -31.77620 -30.26786 -29.27738 -27.79964 -24.93926 -22.51414 -22.04999 -21.03210 -19.89487 -18.70630 -17.67335 -15.33865 -14.82302 -14.41125 -14.08542 -13.86477 -13.69347 -13.16248 -12.88012 -12.39963 -12.14583 -11.84755 -11.72215 -11.62285 -11.15786 -10.82255 -10.74693 -10.68004 -10.48525 -10.38034 -10.12520 -9.98117 -9.60650 -9.20566 -9.11507 -8.87917 -7.50458 -7.46738 -7.05389 -4.36715 2.81516 2.86469 3.18765 3.30047 3.38542 4.07166 4.63875 5.11858 5.20593 5.21387 5.48528 5.73440 5.77050 5.93573 5.97394 5.98120 6.06635 6.15723 6.17402 6.31911 6.37167 6.45332 6.46230 6.60054 6.60669 6.70098 6.87624 6.93315 7.02629 7.15318 7.26679 7.49692 7.73993 7.88604 7.92732 7.97080 8.28285 8.37421 8.82654 8.97436 10.15490 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.010244 C = 0.007662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.365800 B = 2732.734355 C = 3653.472523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.040 3.960 3 Si 1.060 2.940 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.214 4.214 11 C -0.092 4.092 12 C -0.251 4.251 13 C -0.080 4.080 14 C -0.182 4.182 15 C -0.027 4.027 16 C -0.107 4.107 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.106 4.106 21 H 0.297 0.703 22 H 0.101 0.899 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.856 -5.172 3.670 8.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.181 4.181 3 Si 0.885 3.115 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.095 0.905 9 C 0.102 3.898 10 C -0.233 4.233 11 C -0.111 4.111 12 C -0.270 4.270 13 C -0.098 4.098 14 C -0.183 4.183 15 C -0.046 4.046 16 C -0.144 4.144 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.144 4.144 21 H 0.110 0.890 22 H 0.119 0.881 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.598 -3.513 3.610 7.531 hybrid contribution 0.033 -1.780 -0.054 1.781 sum 5.631 -5.293 3.556 8.507 Atomic orbital electron populations 1.70427 1.08176 1.34098 1.30142 1.26886 0.95698 1.04011 0.91501 0.83707 0.75702 0.74255 0.77879 1.20012 1.20237 1.20133 1.20452 1.02434 0.93760 1.38885 0.90521 1.17539 0.90483 0.92217 0.89589 1.21133 1.04442 0.96808 1.00897 1.20606 0.98540 0.93311 0.98596 1.20331 1.05908 0.95889 1.04861 1.20393 0.96592 0.96292 0.96551 1.19618 1.03819 0.93258 1.01598 1.19820 0.92756 0.99172 0.92815 1.21583 0.95572 1.00069 0.97219 1.21558 0.97849 1.00153 0.96087 1.21507 0.97295 0.99053 0.97465 1.21565 0.96062 1.00155 0.97876 1.21584 0.97495 1.00007 0.95287 0.88980 0.88060 0.89495 0.89589 0.89456 0.90081 0.92858 0.92430 0.92220 0.92910 0.92909 0.92496 0.92188 0.92905 0.92374 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.62 12.44 55.55 0.69 -20.93 16 2 C 0.04 1.01 4.94 -17.34 -0.09 0.93 16 3 Si 1.06 21.82 30.00 -169.99 -5.10 16.72 16 4 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.53 -13.75 8.08 -37.74 -0.30 -14.05 16 8 H 0.08 1.95 6.57 -52.49 -0.34 1.60 16 9 C 0.10 2.72 5.19 -106.82 -0.55 2.17 16 10 C -0.21 -5.52 7.99 -38.87 -0.31 -5.83 16 11 C -0.09 -2.18 10.02 -39.66 -0.40 -2.57 16 12 C -0.25 -5.66 10.05 -39.29 -0.39 -6.05 16 13 C -0.08 -1.79 8.74 -39.66 -0.35 -2.13 16 14 C -0.18 -4.26 4.84 -103.91 -0.50 -4.76 16 15 C -0.03 -0.55 2.20 -91.77 -0.20 -0.75 16 16 C -0.11 -1.88 5.06 -26.73 -0.14 -2.01 16 17 C -0.12 -1.74 5.92 -26.73 -0.16 -1.89 16 18 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 19 C -0.12 -1.76 5.92 -26.71 -0.16 -1.92 16 20 C -0.11 -1.89 4.96 -26.71 -0.13 -2.02 16 21 H 0.30 8.23 6.84 -40.82 -0.28 7.95 16 22 H 0.10 2.71 6.81 -52.48 -0.36 2.35 16 23 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 24 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 25 H 0.09 1.75 7.09 -52.48 -0.37 1.38 16 26 H 0.08 1.78 5.82 -51.93 -0.30 1.47 16 27 H 0.05 0.92 7.69 -51.93 -0.40 0.52 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.92 7.13 -51.93 -0.37 0.55 16 LS Contribution 282.82 15.07 4.26 4.26 Total: -1.00 -26.60 282.82 -9.44 -36.04 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.45 Total: 6.53 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: -3.84 Total: -42.63 kcal Atomic # 7 Polarization: -21.62 SS G_CDS: 0.69 Total: -20.93 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.10 Total: 16.72 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.60 -9.44 -36.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.848 kcal (2) G-P(sol) polarization free energy of solvation -26.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds