Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86801 * 119.99897 * 2 1 4 4 H 1.48498 * 109.47057 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47041 * 120.00212 * 3 2 1 6 6 H 1.48505 * 109.47107 * 240.00079 * 3 2 1 7 7 C 1.39946 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99952 * 204.06104 * 7 2 1 9 9 C 1.41395 * 119.99813 * 24.05619 * 7 2 1 10 10 C 1.40734 * 120.24500 * 30.07634 * 9 7 2 11 11 C 1.37598 * 119.74413 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.25197 * 0.02562 * 11 10 9 13 13 C 1.38619 * 120.49822 * 359.97438 * 12 11 10 14 14 C 1.37634 * 120.24686 * 359.67598 * 13 12 11 15 15 C 1.50699 * 120.12796 * 180.31451 * 14 13 12 16 16 C 1.52999 * 109.46807 * 64.96105 * 15 14 13 17 17 C 1.52999 * 109.47170 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47375 * 60.00114 * 17 16 15 19 19 C 1.52999 * 109.46878 * 300.00065 * 18 17 16 20 20 C 1.52998 * 109.47568 * 304.96323 * 15 14 13 21 21 H 0.96999 * 120.00481 * 186.54837 * 1 2 3 22 22 H 1.08004 * 120.12854 * 359.97438 * 10 9 7 23 23 H 1.08007 * 119.87454 * 179.97438 * 11 10 9 24 24 H 1.08001 * 119.75012 * 179.97438 * 12 11 10 25 25 H 1.08003 * 119.87371 * 179.97438 * 13 12 11 26 26 H 1.09004 * 109.47270 * 184.96186 * 15 14 13 27 27 H 1.08994 * 109.47292 * 299.99970 * 16 15 14 28 28 H 1.08999 * 109.47252 * 60.00455 * 16 15 14 29 29 H 1.09004 * 109.47100 * 300.00200 * 17 16 15 30 30 H 1.09003 * 109.47286 * 180.02562 * 17 16 15 31 31 H 1.09006 * 109.47578 * 180.02562 * 18 17 16 32 32 H 1.09004 * 109.46937 * 59.99985 * 18 17 16 33 33 H 1.08994 * 109.47292 * 299.99826 * 19 18 17 34 34 H 1.08999 * 109.47252 * 179.97438 * 19 18 17 35 35 H 1.08996 * 109.46870 * 300.00127 * 20 15 14 36 36 H 1.09004 * 109.46937 * 59.99659 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7464 0.0006 5 1 3.0960 1.6964 1.2125 6 1 3.0959 1.6964 -1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0176 -1.2528 0.3808 9 6 1.3930 -2.3831 -0.5002 10 6 0.4283 -2.2967 -1.5212 11 6 -0.1632 -3.4431 -2.0002 12 6 0.1876 -4.6797 -1.4805 13 6 1.1365 -4.7766 -0.4747 14 6 1.7463 -3.6439 0.0146 15 6 2.7828 -3.7530 1.1031 16 6 4.0016 -4.5106 0.5727 17 6 5.0542 -4.6209 1.6776 18 6 4.4642 -5.3755 2.8706 19 6 3.2454 -4.6179 3.4011 20 6 2.1924 -4.5080 2.2958 21 1 -0.4851 -0.8345 0.0958 22 1 0.1533 -1.3345 -1.9272 23 1 -0.9041 -3.3792 -2.7835 24 1 -0.2821 -5.5742 -1.8622 25 1 1.4018 -5.7450 -0.0769 26 1 3.0848 -2.7543 1.4187 27 1 3.6996 -5.5092 0.2571 28 1 4.4223 -3.9728 -0.2769 29 1 5.3561 -3.6220 1.9928 30 1 5.9227 -5.1602 1.2995 31 1 5.2139 -5.4537 3.6580 32 1 4.1623 -6.3743 2.5554 33 1 3.5473 -3.6191 3.7162 34 1 2.8248 -5.1557 4.2507 35 1 1.3241 -3.9683 2.6736 36 1 1.8904 -5.5066 1.9802 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = -37.321485 kcal Electronic energy + Delta-G solvation = -16145.543909 eV Core-core repulsion = 13784.635100 eV Total energy + Delta-G solvation = -2360.908809 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.43990 -38.44499 -35.68238 -33.34071 -31.56808 -31.17861 -29.44113 -26.86767 -24.07303 -23.35489 -22.85235 -21.46045 -20.21751 -19.56899 -17.02195 -16.41678 -16.22428 -15.72314 -15.26781 -15.00551 -14.67859 -14.50160 -14.20245 -13.86974 -13.54400 -13.15125 -13.00285 -12.84735 -12.54554 -12.35666 -12.04557 -11.97866 -11.89592 -11.74949 -11.43811 -10.98533 -10.95690 -10.74967 -10.70185 -9.42981 -9.37984 -9.01231 -6.37508 0.94643 0.96579 1.48890 1.62829 1.76979 2.34723 2.73217 3.53811 3.86035 3.96598 4.03256 4.31166 4.41243 4.46588 4.47757 4.58702 4.68134 4.69845 4.78182 4.78940 4.85952 5.01050 5.15877 5.16772 5.25003 5.29243 5.35279 5.37317 5.43154 5.54276 5.59501 5.65349 5.83194 5.88278 6.03613 6.06553 6.35945 6.46499 6.88372 7.03790 8.12774 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.010244 C = 0.007662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.365800 B = 2732.734355 C = 3653.472523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.002 3.998 3 Si 1.110 2.890 4 H -0.274 1.274 5 H -0.257 1.257 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.071 3.929 10 C -0.237 4.237 11 C -0.103 4.103 12 C -0.243 4.243 13 C -0.087 4.087 14 C -0.184 4.184 15 C -0.027 4.027 16 C -0.101 4.101 17 C -0.116 4.116 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.102 4.102 21 H 0.279 0.721 22 H 0.079 0.921 23 H 0.109 0.891 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -7.038 4.439 11.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.213 4.213 3 Si 0.928 3.072 4 H -0.199 1.199 5 H -0.182 1.182 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.069 3.931 10 C -0.256 4.256 11 C -0.121 4.121 12 C -0.261 4.261 13 C -0.105 4.105 14 C -0.186 4.186 15 C -0.046 4.046 16 C -0.139 4.139 17 C -0.153 4.153 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.139 4.139 21 H 0.090 0.910 22 H 0.098 0.902 23 H 0.127 0.873 24 H 0.137 0.863 25 H 0.135 0.865 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.995 -5.403 4.380 9.864 hybrid contribution -0.447 -1.367 -0.341 1.479 sum 6.548 -6.770 4.039 10.248 Atomic orbital electron populations 1.70551 1.08958 1.32805 1.33112 1.28256 0.95714 1.07245 0.90048 0.83101 0.74835 0.70299 0.78993 1.19900 1.18166 1.19070 1.20589 1.02494 0.94746 1.40368 0.90890 1.17922 0.91283 0.93621 0.90268 1.21125 1.05792 0.96844 1.01884 1.20892 0.98875 0.93132 0.99205 1.20786 1.04986 0.96500 1.03877 1.20747 0.96190 0.97164 0.96382 1.20108 1.03934 0.92741 1.01772 1.19818 0.93172 0.98724 0.92841 1.21507 0.95174 0.99493 0.97722 1.21542 0.97591 1.00580 0.95588 1.21498 0.97007 0.98831 0.97477 1.21548 0.95898 1.00526 0.97353 1.21520 0.97612 0.99495 0.95303 0.90956 0.90250 0.87309 0.86299 0.86453 0.92780 0.92048 0.94291 0.92820 0.90626 0.90359 0.91464 0.92927 0.90781 0.94756 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.75 12.44 21.83 0.27 -46.47 16 2 C 0.00 0.09 4.94 85.26 0.42 0.52 16 3 Si 1.11 44.90 30.00 68.60 2.06 46.96 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.55 -30.15 8.08 23.46 0.19 -29.96 16 8 H 0.07 3.89 6.57 -2.91 -0.02 3.87 16 9 C 0.07 3.86 5.19 -21.29 -0.11 3.75 16 10 C -0.24 -12.72 7.99 22.73 0.18 -12.54 16 11 C -0.10 -4.84 10.02 22.22 0.22 -4.62 16 12 C -0.24 -10.48 10.05 22.46 0.23 -10.25 16 13 C -0.09 -3.73 8.74 22.22 0.19 -3.54 16 14 C -0.18 -8.69 4.84 -19.41 -0.09 -8.79 16 15 C -0.03 -1.09 2.20 -11.54 -0.03 -1.11 16 16 C -0.10 -3.41 5.06 30.59 0.15 -3.26 16 17 C -0.12 -3.06 5.92 30.59 0.18 -2.88 16 18 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 19 C -0.12 -3.14 5.92 30.61 0.18 -2.95 16 20 C -0.10 -3.50 4.96 30.61 0.15 -3.35 16 21 H 0.28 16.42 6.84 -92.71 -0.63 15.78 16 22 H 0.08 4.51 6.81 -2.91 -0.02 4.49 16 23 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 24 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 25 H 0.12 4.31 7.09 -2.91 -0.02 4.29 16 26 H 0.05 2.44 5.82 -2.38 -0.01 2.43 16 27 H 0.06 1.95 7.69 -2.39 -0.02 1.93 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.07 1.45 8.14 -2.38 -0.02 1.44 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 2.02 7.13 -2.38 -0.02 2.01 16 Total: -1.00 -59.49 282.82 5.56 -53.93 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 1.18 Total: 26.95 kcal Atomic # 6 Polarization: -83.42 SS G_CDS: 2.06 Total: -81.36 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.27 Total: -46.47 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.06 Total: 46.96 kcal Total: -59.49 5.56 -53.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.605 kcal (2) G-P(sol) polarization free energy of solvation -59.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds