Wall clock time and date at job start Mon Mar 30 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47249 * 2 1 4 4 C 1.46499 * 120.00503 * 89.99623 * 3 2 1 5 5 C 1.50698 * 109.47057 * 89.99800 * 4 3 2 6 6 H 1.08002 * 119.99852 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00125 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99801 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99949 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47264 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46917 * 119.99650 * 9 7 5 12 12 H 1.48499 * 109.47215 * 239.99525 * 9 7 5 13 13 C 1.39188 * 119.99523 * 269.99641 * 3 2 1 14 14 C 1.39183 * 119.92246 * 179.72402 * 13 3 2 15 15 C 1.37654 * 120.07451 * 179.72554 * 14 13 3 16 16 C 1.39808 * 119.92441 * 0.54747 * 15 14 13 17 17 C 1.43200 * 120.07551 * 179.70414 * 16 15 14 18 18 N 7.57080 * 102.27528 * 307.99792 * 2 1 3 19 19 C 1.39808 * 119.84739 * 359.72898 * 16 15 14 20 20 C 1.37654 * 119.92877 * 359.97438 * 19 16 15 21 21 H 1.09001 * 109.47002 * 60.00085 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00351 * 1 2 3 24 24 H 1.09001 * 109.46998 * 119.99358 * 2 1 3 25 25 H 1.09000 * 109.47050 * 239.99649 * 2 1 3 26 26 H 1.08995 * 109.47408 * 210.00417 * 4 3 2 27 27 H 1.09000 * 109.46694 * 330.00363 * 4 3 2 28 28 H 0.97000 * 119.99506 * 180.02562 * 8 7 5 29 29 H 1.07998 * 119.96227 * 359.97438 * 14 13 3 30 30 H 1.08000 * 120.03841 * 180.28364 * 15 14 13 31 31 H 1.07999 * 120.03614 * 179.97438 * 19 16 15 32 32 H 1.07994 * 119.96583 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 1.2687 5 6 3.6858 1.8351 1.7038 6 1 4.3429 1.2309 1.0958 7 6 4.1491 2.3898 2.8779 8 7 3.3488 3.1251 3.6184 9 14 5.9135 2.0968 3.4169 10 1 6.6015 1.2425 2.4159 11 1 6.6205 3.3982 3.5255 12 1 5.9215 1.4174 4.7373 13 6 2.2505 2.0372 -1.2055 14 6 2.7089 3.3514 -1.2037 15 6 2.9448 4.0012 -2.3940 16 6 2.7125 3.3436 -3.6057 17 6 2.9507 4.0187 -4.8458 18 7 3.1397 4.5543 -5.8296 19 6 2.2464 2.0255 -3.6037 20 6 2.0184 1.3794 -2.4098 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5137 0.8901 25 1 1.8934 -0.5139 -0.8900 26 1 2.0956 3.1411 1.1383 27 1 1.5817 1.6878 2.0283 28 1 3.6749 3.5156 4.4443 29 1 2.8837 3.8604 -0.2674 30 1 3.3050 5.0194 -2.3919 31 1 2.0655 1.5147 -4.5380 32 1 1.6580 0.3614 -2.4076 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044413375.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:22 Heat of formation + Delta-G solvation = 38.506808 kcal Electronic energy + Delta-G solvation = -15134.768109 eV Core-core repulsion = 12673.607119 eV Total energy + Delta-G solvation = -2461.160991 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.58405 -38.13974 -36.75542 -34.86620 -32.60392 -31.70080 -30.70640 -28.26793 -25.25211 -24.61690 -22.87861 -21.71129 -19.62937 -18.59185 -17.78931 -16.99889 -16.25275 -15.63161 -15.37249 -14.88729 -14.77726 -14.63745 -14.47196 -13.94466 -13.88902 -13.52289 -13.29751 -13.07282 -12.97228 -12.73902 -12.58046 -12.45075 -12.17208 -11.88342 -11.69129 -11.35729 -10.60777 -10.52754 -9.81926 -8.36168 -7.88854 -6.33183 0.23386 0.66791 1.39619 1.43201 1.53372 1.80421 2.17332 2.36036 2.54856 3.11134 3.17957 3.19518 4.02349 4.12796 4.23717 4.49101 4.55625 4.61982 4.71471 4.82631 4.97395 5.07116 5.08652 5.21681 5.27103 5.42305 5.45281 5.56308 5.64105 5.72759 5.97358 6.09760 6.46349 6.65927 6.83413 6.87967 7.38644 8.86363 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.007424 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.499235 B = 3770.729712 C = 4598.232880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.110 3.890 3 N -0.606 5.606 4 C 0.261 3.739 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.016 3.984 8 N -0.925 5.925 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.251 3.749 14 C -0.217 4.217 15 C -0.015 4.015 16 C -0.132 4.132 17 C 0.296 3.704 18 N -0.494 5.494 19 C -0.006 4.006 20 C -0.214 4.214 21 H 0.061 0.939 22 H 0.086 0.914 23 H 0.037 0.963 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.019 0.981 27 H 0.013 0.987 28 H 0.266 0.734 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.154 0.846 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 -5.952 -8.071 10.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.013 4.013 3 N -0.308 5.308 4 C 0.139 3.861 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.183 4.183 8 N -0.565 5.565 9 Si 0.782 3.218 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.204 1.204 13 C 0.141 3.859 14 C -0.240 4.240 15 C -0.036 4.036 16 C -0.139 4.139 17 C -0.016 4.016 18 N -0.171 5.171 19 C -0.027 4.027 20 C -0.237 4.237 21 H 0.080 0.920 22 H 0.105 0.895 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.037 0.963 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.131 0.869 30 H 0.152 0.848 31 H 0.172 0.828 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.871 -5.164 -9.181 11.222 hybrid contribution 0.880 0.101 1.370 1.632 sum -2.991 -5.063 -7.810 9.777 Atomic orbital electron populations 1.22133 0.95126 1.02923 1.01642 1.21580 0.94785 0.81895 1.03044 1.47209 1.66180 1.13634 1.03771 1.18890 0.94722 0.92221 0.80251 1.21802 0.97917 1.31621 1.06378 0.92801 1.25684 1.01456 0.94717 0.96473 1.70027 1.37323 1.34359 1.14824 0.85532 0.80172 0.77980 0.78146 1.19332 1.20671 1.20423 1.18458 0.89265 0.91326 0.86816 1.20702 1.09641 0.95174 0.98433 1.20876 0.93681 0.99185 0.89880 1.15718 1.16631 0.95855 0.85704 1.25853 0.91341 0.92039 0.92406 1.81197 1.13026 1.10434 1.12473 1.21009 0.91891 0.91176 0.98595 1.20733 1.11425 1.01946 0.89579 0.92033 0.89482 0.94410 0.91794 0.88854 0.96301 0.96856 0.92498 0.86931 0.84782 0.82809 0.83133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 10.24 71.98 0.74 -3.09 16 2 C 0.11 3.15 5.87 86.38 0.51 3.66 16 3 N -0.61 -22.32 2.58 -701.58 -1.81 -24.13 16 4 C 0.26 12.20 4.91 85.63 0.42 12.62 16 5 C -0.54 -27.73 9.39 25.60 0.24 -27.49 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 7 C 0.02 0.85 5.46 84.65 0.46 1.32 16 8 N -0.93 -51.53 13.29 21.45 0.28 -51.24 16 9 Si 0.96 41.91 29.54 68.60 2.03 43.94 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 13 C 0.25 8.46 6.55 38.43 0.25 8.71 16 14 C -0.22 -7.64 9.18 22.36 0.21 -7.43 16 15 C -0.01 -0.44 9.75 22.51 0.22 -0.22 16 16 C -0.13 -3.57 5.74 -21.27 -0.12 -3.69 16 17 C 0.30 8.51 15.33 88.33 1.35 9.86 16 18 N -0.49 -16.01 18.54 19.00 0.35 -15.66 16 19 C -0.01 -0.13 9.75 22.51 0.22 0.09 16 20 C -0.21 -5.51 9.18 22.36 0.21 -5.30 16 21 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 22 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 25 H 0.09 2.17 6.17 -2.39 -0.01 2.15 16 26 H 0.02 0.96 6.16 -2.39 -0.01 0.94 16 27 H 0.01 0.67 8.07 -2.39 -0.02 0.65 16 28 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.11 4.62 6.11 -2.91 -0.02 4.60 16 30 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.15 3.08 6.11 -2.91 -0.02 3.06 16 Total: -1.00 -58.79 283.95 6.67 -52.12 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.12 Total: 5.94 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 4.70 Total: -10.97 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -1.17 Total: -91.04 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -58.79 6.67 -52.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044413375.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.626 kcal (2) G-P(sol) polarization free energy of solvation -58.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds