Wall clock time and date at job start Mon Mar 30 2020 03:05:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46902 * 109.47434 * 2 1
4 4 C 1.46900 * 111.00023 * 193.95579 * 3 2 1
5 5 C 1.50697 * 109.47319 * 66.04282 * 4 3 2
6 6 H 1.08002 * 120.00042 * 359.97438 * 5 4 3
7 7 C 1.37874 * 120.00022 * 180.02562 * 5 4 3
8 8 N 1.31513 * 120.00015 * 359.97438 * 7 5 4
9 9 Si 1.86797 * 120.00208 * 179.97438 * 7 5 4
10 10 H 1.48510 * 109.47188 * 59.99953 * 9 7 5
11 11 H 1.48502 * 109.47340 * 179.97438 * 9 7 5
12 12 H 1.48501 * 109.47085 * 299.99995 * 9 7 5
13 13 C 1.39026 * 111.00290 * 69.99472 * 3 2 1
14 14 C 1.38892 * 120.16792 * 63.95779 * 13 3 2
15 15 C 1.38012 * 120.06793 * 180.02562 * 14 13 3
16 16 C 1.38575 * 120.42379 * 359.97438 * 15 14 13
17 17 C 1.37791 * 120.34748 * 359.97438 * 16 15 14
18 18 C 1.39738 * 119.91663 * 0.03083 * 17 16 15
19 19 C 1.43200 * 120.20419 * 179.97438 * 18 17 16
20 20 N 4.44256 * 66.70130 * 348.06811 * 2 1 3
21 21 H 1.08997 * 109.47228 * 180.02562 * 1 2 3
22 22 H 1.09003 * 109.46871 * 300.00305 * 1 2 3
23 23 H 1.09002 * 109.46669 * 60.00182 * 1 2 3
24 24 H 1.08995 * 109.47093 * 239.99448 * 2 1 3
25 25 H 1.09000 * 109.47127 * 119.99557 * 2 1 3
26 26 H 1.08996 * 109.46638 * 186.04436 * 4 3 2
27 27 H 1.09000 * 109.46774 * 306.04475 * 4 3 2
28 28 H 0.97004 * 120.00144 * 180.02562 * 8 7 5
29 29 H 1.07993 * 119.96196 * 0.02562 * 14 13 3
30 30 H 1.07999 * 119.79057 * 179.97438 * 15 14 13
31 31 H 1.07999 * 119.82853 * 179.72991 * 16 15 14
32 32 H 1.07991 * 120.04253 * 179.97438 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0198 1.3850 0.0000
4 6 3.4501 1.4376 -0.3308
5 6 3.6536 0.9853 -1.7538
6 1 2.8053 0.6880 -2.3525
7 6 4.9229 0.9500 -2.2910
8 7 5.9559 1.3115 -1.5618
9 14 5.1753 0.3887 -4.0547
10 1 4.4225 1.2825 -4.9712
11 1 6.6212 0.4420 -4.3891
12 1 4.6827 -1.0040 -4.2062
13 6 1.7673 2.0028 1.2196
14 6 2.3713 1.5325 2.3785
15 6 2.1188 2.1471 3.5882
16 6 1.2638 3.2354 3.6574
17 6 0.6561 3.7169 2.5183
18 6 0.9015 3.1055 1.2859
19 6 0.2728 3.6005 0.0983
20 7 -0.2271 3.9921 -0.8436
21 1 -0.3633 -1.0276 0.0005
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 1.8934 -0.5139 -0.8899
25 1 1.8934 -0.5138 0.8900
26 1 3.8114 2.4599 -0.2192
27 1 4.0028 0.7814 0.3416
28 1 6.8489 1.2870 -1.9399
29 1 3.0392 0.6851 2.3329
30 1 2.5905 1.7774 4.4866
31 1 1.0696 3.7063 4.6097
32 1 -0.0097 4.5651 2.5780
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000044413377.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:05:24
Heat of formation + Delta-G solvation = 58.318602 kcal
Electronic energy + Delta-G solvation = -15497.646981 eV
Core-core repulsion = 13037.345095 eV
Total energy + Delta-G solvation = -2460.301887 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.74109 -36.46565 -35.80514 -32.74077 -31.07128 -30.71979 -29.25801 -26.26221
-23.37161 -22.86864 -22.51717 -20.02292 -18.49086 -16.55341 -15.89269 -15.28180
-15.06317 -14.51848 -14.16212 -13.92133 -13.27366 -13.14819 -12.85267 -12.48910
-12.23921 -12.17193 -11.88593 -11.60635 -11.27750 -11.17181 -11.01508 -10.77563
-10.59777 -10.36524 -10.05437 -9.37031 -8.74464 -8.51377 -8.36474 -7.59820
-6.09595 -4.11574 1.07634 1.50896 3.25959 3.30986 3.35134 3.36112
3.38948 4.19900 4.34013 4.38995 4.59042 5.06279 5.16754 5.26280
5.39362 5.59727 5.63752 5.72125 5.87389 6.00808 6.06301 6.24601
6.39352 6.50698 6.57995 6.66431 6.71567 6.91189 7.16950 7.21636
7.73764 7.91961 8.02958 8.08148 8.46390 8.94391 9.52772 11.00965
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.027388 B = 0.007844 C = 0.007354
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1022.091735 B = 3568.694243 C = 3806.550422
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.063 3.937
3 N -0.518 5.518
4 C 0.202 3.798
5 C -0.512 4.512
6 H 0.065 0.935
7 C 0.058 3.942
8 N -0.896 5.896
9 Si 0.899 3.101
10 H -0.276 1.276
11 H -0.287 1.287
12 H -0.276 1.276
13 C 0.171 3.829
14 C -0.154 4.154
15 C -0.084 4.084
16 C -0.140 4.140
17 C -0.071 4.071
18 C -0.025 4.025
19 C 0.278 3.722
20 N -0.430 5.430
21 H 0.053 0.947
22 H 0.045 0.955
23 H 0.057 0.943
24 H 0.093 0.907
25 H 0.029 0.971
26 H 0.033 0.967
27 H 0.001 0.999
28 H 0.263 0.737
29 H 0.130 0.870
30 H 0.123 0.877
31 H 0.127 0.873
32 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.837 -0.108 11.381 13.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.063 4.063
3 N -0.240 5.240
4 C 0.079 3.921
5 C -0.551 4.551
6 H 0.083 0.917
7 C -0.143 4.143
8 N -0.535 5.535
9 Si 0.727 3.273
10 H -0.201 1.201
11 H -0.213 1.213
12 H -0.202 1.202
13 C 0.073 3.927
14 C -0.174 4.174
15 C -0.103 4.103
16 C -0.159 4.159
17 C -0.092 4.092
18 C -0.030 4.030
19 C -0.037 4.037
20 N -0.106 5.106
21 H 0.072 0.928
22 H 0.064 0.936
23 H 0.077 0.923
24 H 0.111 0.889
25 H 0.047 0.953
26 H 0.051 0.949
27 H 0.019 0.981
28 H 0.073 0.927
29 H 0.148 0.852
30 H 0.141 0.859
31 H 0.145 0.855
32 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -8.648 0.756 9.499 12.868
hybrid contribution 1.062 -0.846 0.000 1.358
sum -7.585 -0.090 9.499 12.156
Atomic orbital electron populations
1.21819 0.96328 1.00653 1.01755 1.22057 0.94270 0.88153 1.01819
1.59719 1.22919 1.16862 1.24510 1.19807 0.78277 0.97440 0.96576
1.21066 0.92777 1.44258 0.96980 0.91731 1.24959 0.95858 0.95419
0.98109 1.69940 0.98965 1.47913 1.36685 0.86538 0.76952 0.79236
0.84592 1.20128 1.21258 1.20172 1.19098 0.91289 0.92040 0.90285
1.21818 1.01087 1.01721 0.92790 1.21209 0.96526 0.95049 0.97558
1.20928 0.99009 0.97912 0.98014 1.21029 0.98734 0.98716 0.90737
1.16138 1.00620 0.98060 0.88160 1.25288 0.92931 0.92834 0.92669
1.81109 1.10408 1.09648 1.09407 0.92841 0.93575 0.92343 0.88870
0.95294 0.94938 0.98126 0.92729 0.85209 0.85864 0.85544 0.85355
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.36 9.94 37.16 0.37 -1.99 16
2 C 0.06 1.17 5.44 -3.82 -0.02 1.15 16
3 N -0.52 -10.89 3.82 -172.22 -0.66 -11.55 16
4 C 0.20 5.08 4.30 -4.98 -0.02 5.06 16
5 C -0.51 -14.14 8.31 -34.44 -0.29 -14.43 16
6 H 0.06 1.78 7.23 -52.49 -0.38 1.40 16
7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
8 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16
9 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16
10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
13 C 0.17 3.06 3.73 -83.56 -0.31 2.75 16
14 C -0.15 -2.37 8.51 -39.42 -0.34 -2.71 16
15 C -0.08 -1.01 10.03 -39.54 -0.40 -1.41 16
16 C -0.14 -1.54 10.02 -39.62 -0.40 -1.94 16
17 C -0.07 -0.89 9.75 -39.18 -0.38 -1.28 16
18 C -0.03 -0.42 5.76 -106.61 -0.61 -1.03 16
19 C 0.28 5.20 14.81 -22.47 -0.33 4.87 16
20 N -0.43 -8.81 18.54 41.84 0.78 -8.03 16
21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
22 H 0.05 0.70 7.52 -51.93 -0.39 0.31 16
23 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
24 H 0.09 1.90 6.60 -51.93 -0.34 1.56 16
25 H 0.03 0.50 7.06 -51.93 -0.37 0.13 16
26 H 0.03 0.90 8.06 -51.93 -0.42 0.48 16
27 H 0.00 0.02 7.46 -51.93 -0.39 -0.36 16
28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
29 H 0.13 2.03 7.13 -52.49 -0.37 1.66 16
30 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16
31 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16
32 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16
LS Contribution 282.39 15.07 4.26 4.26
Total: -1.00 -30.43 282.39 -6.64 -37.08
By element:
Atomic # 1 Polarization: 0.34 SS G_CDS: -3.91 Total: -3.57 kcal
Atomic # 6 Polarization: -6.58 SS G_CDS: -2.83 Total: -9.41 kcal
Atomic # 7 Polarization: -45.79 SS G_CDS: 0.85 Total: -44.94 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -30.43 -6.64 -37.08 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000044413377.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.396 kcal
(2) G-P(sol) polarization free energy of solvation -30.432 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.964 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.319 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds