Wall clock time and date at job start Mon Mar 30 2020 03:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.47434 * 2 1 4 4 C 1.46900 * 111.00023 * 193.95579 * 3 2 1 5 5 C 1.50697 * 109.47319 * 66.04282 * 4 3 2 6 6 H 1.08002 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00022 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00015 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00208 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47188 * 59.99953 * 9 7 5 11 11 H 1.48502 * 109.47340 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47085 * 299.99995 * 9 7 5 13 13 C 1.39026 * 111.00290 * 69.99472 * 3 2 1 14 14 C 1.38892 * 120.16792 * 63.95779 * 13 3 2 15 15 C 1.38012 * 120.06793 * 180.02562 * 14 13 3 16 16 C 1.38575 * 120.42379 * 359.97438 * 15 14 13 17 17 C 1.37791 * 120.34748 * 359.97438 * 16 15 14 18 18 C 1.39738 * 119.91663 * 0.03083 * 17 16 15 19 19 C 1.43200 * 120.20419 * 179.97438 * 18 17 16 20 20 N 4.44256 * 66.70130 * 348.06811 * 2 1 3 21 21 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46871 * 300.00305 * 1 2 3 23 23 H 1.09002 * 109.46669 * 60.00182 * 1 2 3 24 24 H 1.08995 * 109.47093 * 239.99448 * 2 1 3 25 25 H 1.09000 * 109.47127 * 119.99557 * 2 1 3 26 26 H 1.08996 * 109.46638 * 186.04436 * 4 3 2 27 27 H 1.09000 * 109.46774 * 306.04475 * 4 3 2 28 28 H 0.97004 * 120.00144 * 180.02562 * 8 7 5 29 29 H 1.07993 * 119.96196 * 0.02562 * 14 13 3 30 30 H 1.07999 * 119.79057 * 179.97438 * 15 14 13 31 31 H 1.07999 * 119.82853 * 179.72991 * 16 15 14 32 32 H 1.07991 * 120.04253 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4501 1.4376 -0.3308 5 6 3.6536 0.9853 -1.7538 6 1 2.8053 0.6880 -2.3525 7 6 4.9229 0.9500 -2.2910 8 7 5.9559 1.3115 -1.5618 9 14 5.1753 0.3887 -4.0547 10 1 4.4225 1.2825 -4.9712 11 1 6.6212 0.4420 -4.3891 12 1 4.6827 -1.0040 -4.2062 13 6 1.7673 2.0028 1.2196 14 6 2.3713 1.5325 2.3785 15 6 2.1188 2.1471 3.5882 16 6 1.2638 3.2354 3.6574 17 6 0.6561 3.7169 2.5183 18 6 0.9015 3.1055 1.2859 19 6 0.2728 3.6005 0.0983 20 7 -0.2271 3.9921 -0.8436 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.8114 2.4599 -0.2192 27 1 4.0028 0.7814 0.3416 28 1 6.8489 1.2870 -1.9399 29 1 3.0392 0.6851 2.3329 30 1 2.5905 1.7774 4.4866 31 1 1.0696 3.7063 4.6097 32 1 -0.0097 4.5651 2.5780 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044413377.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:24 Heat of formation + Delta-G solvation = 58.318602 kcal Electronic energy + Delta-G solvation = -15497.646981 eV Core-core repulsion = 13037.345095 eV Total energy + Delta-G solvation = -2460.301887 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.74109 -36.46565 -35.80514 -32.74077 -31.07128 -30.71979 -29.25801 -26.26221 -23.37161 -22.86864 -22.51717 -20.02292 -18.49086 -16.55341 -15.89269 -15.28180 -15.06317 -14.51848 -14.16212 -13.92133 -13.27366 -13.14819 -12.85267 -12.48910 -12.23921 -12.17193 -11.88593 -11.60635 -11.27750 -11.17181 -11.01508 -10.77563 -10.59777 -10.36524 -10.05437 -9.37031 -8.74464 -8.51377 -8.36474 -7.59820 -6.09595 -4.11574 1.07634 1.50896 3.25959 3.30986 3.35134 3.36112 3.38948 4.19900 4.34013 4.38995 4.59042 5.06279 5.16754 5.26280 5.39362 5.59727 5.63752 5.72125 5.87389 6.00808 6.06301 6.24601 6.39352 6.50698 6.57995 6.66431 6.71567 6.91189 7.16950 7.21636 7.73764 7.91961 8.02958 8.08148 8.46390 8.94391 9.52772 11.00965 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027388 B = 0.007844 C = 0.007354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.091735 B = 3568.694243 C = 3806.550422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 N -0.518 5.518 4 C 0.202 3.798 5 C -0.512 4.512 6 H 0.065 0.935 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.171 3.829 14 C -0.154 4.154 15 C -0.084 4.084 16 C -0.140 4.140 17 C -0.071 4.071 18 C -0.025 4.025 19 C 0.278 3.722 20 N -0.430 5.430 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.093 0.907 25 H 0.029 0.971 26 H 0.033 0.967 27 H 0.001 0.999 28 H 0.263 0.737 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 -0.108 11.381 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.063 4.063 3 N -0.240 5.240 4 C 0.079 3.921 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.073 3.927 14 C -0.174 4.174 15 C -0.103 4.103 16 C -0.159 4.159 17 C -0.092 4.092 18 C -0.030 4.030 19 C -0.037 4.037 20 N -0.106 5.106 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.111 0.889 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.019 0.981 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.648 0.756 9.499 12.868 hybrid contribution 1.062 -0.846 0.000 1.358 sum -7.585 -0.090 9.499 12.156 Atomic orbital electron populations 1.21819 0.96328 1.00653 1.01755 1.22057 0.94270 0.88153 1.01819 1.59719 1.22919 1.16862 1.24510 1.19807 0.78277 0.97440 0.96576 1.21066 0.92777 1.44258 0.96980 0.91731 1.24959 0.95858 0.95419 0.98109 1.69940 0.98965 1.47913 1.36685 0.86538 0.76952 0.79236 0.84592 1.20128 1.21258 1.20172 1.19098 0.91289 0.92040 0.90285 1.21818 1.01087 1.01721 0.92790 1.21209 0.96526 0.95049 0.97558 1.20928 0.99009 0.97912 0.98014 1.21029 0.98734 0.98716 0.90737 1.16138 1.00620 0.98060 0.88160 1.25288 0.92931 0.92834 0.92669 1.81109 1.10408 1.09648 1.09407 0.92841 0.93575 0.92343 0.88870 0.95294 0.94938 0.98126 0.92729 0.85209 0.85864 0.85544 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.94 37.16 0.37 -1.99 16 2 C 0.06 1.17 5.44 -3.82 -0.02 1.15 16 3 N -0.52 -10.89 3.82 -172.22 -0.66 -11.55 16 4 C 0.20 5.08 4.30 -4.98 -0.02 5.06 16 5 C -0.51 -14.14 8.31 -34.44 -0.29 -14.43 16 6 H 0.06 1.78 7.23 -52.49 -0.38 1.40 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 9 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.17 3.06 3.73 -83.56 -0.31 2.75 16 14 C -0.15 -2.37 8.51 -39.42 -0.34 -2.71 16 15 C -0.08 -1.01 10.03 -39.54 -0.40 -1.41 16 16 C -0.14 -1.54 10.02 -39.62 -0.40 -1.94 16 17 C -0.07 -0.89 9.75 -39.18 -0.38 -1.28 16 18 C -0.03 -0.42 5.76 -106.61 -0.61 -1.03 16 19 C 0.28 5.20 14.81 -22.47 -0.33 4.87 16 20 N -0.43 -8.81 18.54 41.84 0.78 -8.03 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.70 7.52 -51.93 -0.39 0.31 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.09 1.90 6.60 -51.93 -0.34 1.56 16 25 H 0.03 0.50 7.06 -51.93 -0.37 0.13 16 26 H 0.03 0.90 8.06 -51.93 -0.42 0.48 16 27 H 0.00 0.02 7.46 -51.93 -0.39 -0.36 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.13 2.03 7.13 -52.49 -0.37 1.66 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 282.39 15.07 4.26 4.26 Total: -1.00 -30.43 282.39 -6.64 -37.08 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -3.91 Total: -3.57 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.83 Total: -9.41 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.85 Total: -44.94 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.43 -6.64 -37.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044413377.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.396 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds