Wall clock time and date at job start Mon Mar 30 2020 03:05:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46902 * 109.47434 * 2 1
4 4 C 1.46900 * 111.00023 * 193.95579 * 3 2 1
5 5 C 1.50697 * 109.47319 * 66.04282 * 4 3 2
6 6 H 1.08002 * 120.00042 * 359.97438 * 5 4 3
7 7 C 1.37874 * 120.00022 * 180.02562 * 5 4 3
8 8 N 1.31513 * 120.00015 * 359.97438 * 7 5 4
9 9 Si 1.86797 * 120.00208 * 179.97438 * 7 5 4
10 10 H 1.48510 * 109.47188 * 59.99953 * 9 7 5
11 11 H 1.48502 * 109.47340 * 179.97438 * 9 7 5
12 12 H 1.48501 * 109.47085 * 299.99995 * 9 7 5
13 13 C 1.39026 * 111.00290 * 69.99472 * 3 2 1
14 14 C 1.38892 * 120.16792 * 63.95779 * 13 3 2
15 15 C 1.38012 * 120.06793 * 180.02562 * 14 13 3
16 16 C 1.38575 * 120.42379 * 359.97438 * 15 14 13
17 17 C 1.37791 * 120.34748 * 359.97438 * 16 15 14
18 18 C 1.39738 * 119.91663 * 0.03083 * 17 16 15
19 19 C 1.43200 * 120.20419 * 179.97438 * 18 17 16
20 20 N 4.44256 * 66.70130 * 348.06811 * 2 1 3
21 21 H 1.08997 * 109.47228 * 180.02562 * 1 2 3
22 22 H 1.09003 * 109.46871 * 300.00305 * 1 2 3
23 23 H 1.09002 * 109.46669 * 60.00182 * 1 2 3
24 24 H 1.08995 * 109.47093 * 239.99448 * 2 1 3
25 25 H 1.09000 * 109.47127 * 119.99557 * 2 1 3
26 26 H 1.08996 * 109.46638 * 186.04436 * 4 3 2
27 27 H 1.09000 * 109.46774 * 306.04475 * 4 3 2
28 28 H 0.97004 * 120.00144 * 180.02562 * 8 7 5
29 29 H 1.07993 * 119.96196 * 0.02562 * 14 13 3
30 30 H 1.07999 * 119.79057 * 179.97438 * 15 14 13
31 31 H 1.07999 * 119.82853 * 179.72991 * 16 15 14
32 32 H 1.07991 * 120.04253 * 179.97438 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0198 1.3850 0.0000
4 6 3.4501 1.4376 -0.3308
5 6 3.6536 0.9853 -1.7538
6 1 2.8053 0.6880 -2.3525
7 6 4.9229 0.9500 -2.2910
8 7 5.9559 1.3115 -1.5618
9 14 5.1753 0.3887 -4.0547
10 1 4.4225 1.2825 -4.9712
11 1 6.6212 0.4420 -4.3891
12 1 4.6827 -1.0040 -4.2062
13 6 1.7673 2.0028 1.2196
14 6 2.3713 1.5325 2.3785
15 6 2.1188 2.1471 3.5882
16 6 1.2638 3.2354 3.6574
17 6 0.6561 3.7169 2.5183
18 6 0.9015 3.1055 1.2859
19 6 0.2728 3.6005 0.0983
20 7 -0.2271 3.9921 -0.8436
21 1 -0.3633 -1.0276 0.0005
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 1.8934 -0.5139 -0.8899
25 1 1.8934 -0.5138 0.8900
26 1 3.8114 2.4599 -0.2192
27 1 4.0028 0.7814 0.3416
28 1 6.8489 1.2870 -1.9399
29 1 3.0392 0.6851 2.3329
30 1 2.5905 1.7774 4.4866
31 1 1.0696 3.7063 4.6097
32 1 -0.0097 4.5651 2.5780
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000044413377.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:05:23
Heat of formation + Delta-G solvation = 40.217284 kcal
Electronic energy + Delta-G solvation = -15498.431913 eV
Core-core repulsion = 13037.345095 eV
Total energy + Delta-G solvation = -2461.086819 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.01803 -37.91501 -37.22623 -34.82579 -32.22427 -32.05700 -30.82543 -28.05715
-24.52664 -24.44236 -24.16551 -21.42685 -19.73274 -18.51522 -17.29415 -16.83966
-16.57033 -15.92143 -15.68327 -15.16640 -14.74468 -14.60952 -14.33965 -14.10422
-13.95713 -13.64684 -13.13453 -13.00672 -12.91730 -12.71264 -12.43951 -12.41906
-12.18845 -11.98410 -11.85297 -11.39120 -10.65832 -9.86005 -9.55306 -9.23857
-8.24896 -6.34570 -0.08975 0.41365 1.37236 1.40213 1.47979 1.81616
2.09864 2.36191 2.96606 3.04236 3.08538 3.15402 4.04740 4.15345
4.22327 4.34732 4.50314 4.55182 4.56626 4.74534 4.90313 4.97835
5.04104 5.08912 5.22422 5.32472 5.39549 5.51567 5.55879 5.62946
5.92431 6.04592 6.17045 6.60848 6.78446 6.78746 7.34337 8.85453
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.027388 B = 0.007844 C = 0.007354
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1022.091735 B = 3568.694243 C = 3806.550422
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.063 3.937
3 N -0.529 5.529
4 C 0.223 3.777
5 C -0.529 4.529
6 H 0.057 0.943
7 C 0.008 3.992
8 N -0.927 5.927
9 Si 0.964 3.036
10 H -0.277 1.277
11 H -0.278 1.278
12 H -0.264 1.264
13 C 0.135 3.865
14 C -0.169 4.169
15 C -0.069 4.069
16 C -0.120 4.120
17 C -0.058 4.058
18 C -0.049 4.049
19 C 0.291 3.709
20 N -0.476 5.476
21 H 0.081 0.919
22 H 0.055 0.945
23 H 0.038 0.962
24 H 0.066 0.934
25 H 0.040 0.960
26 H -0.003 1.003
27 H -0.016 1.016
28 H 0.266 0.734
29 H 0.117 0.883
30 H 0.160 0.840
31 H 0.175 0.825
32 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.671 -0.032 13.527 16.068
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.063 4.063
3 N -0.252 5.252
4 C 0.099 3.901
5 C -0.567 4.567
6 H 0.075 0.925
7 C -0.190 4.190
8 N -0.567 5.567
9 Si 0.789 3.211
10 H -0.203 1.203
11 H -0.204 1.204
12 H -0.189 1.189
13 C 0.038 3.962
14 C -0.189 4.189
15 C -0.088 4.088
16 C -0.137 4.137
17 C -0.079 4.079
18 C -0.053 4.053
19 C -0.023 4.023
20 N -0.153 5.153
21 H 0.099 0.901
22 H 0.074 0.926
23 H 0.057 0.943
24 H 0.085 0.915
25 H 0.059 0.941
26 H 0.015 0.985
27 H 0.001 0.999
28 H 0.075 0.925
29 H 0.135 0.865
30 H 0.177 0.823
31 H 0.193 0.807
32 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -9.504 0.826 11.661 15.066
hybrid contribution 1.305 -0.839 -0.495 1.628
sum -8.199 -0.013 11.166 13.853
Atomic orbital electron populations
1.21693 0.93958 1.02264 1.01181 1.22058 0.96095 0.87143 1.01009
1.59510 1.19881 1.18292 1.27473 1.19314 0.81100 0.94491 0.95188
1.21374 0.92808 1.44294 0.98256 0.92476 1.25803 0.95566 0.95397
1.02282 1.70049 0.99370 1.48804 1.38485 0.85523 0.77130 0.79144
0.79351 1.20267 1.20354 1.18914 1.19166 0.93813 0.93438 0.89778
1.21782 1.01391 1.02184 0.93531 1.21632 0.95583 0.94385 0.97174
1.21474 0.96544 0.96479 0.99221 1.21438 0.98353 0.98695 0.89407
1.16358 1.01572 0.98530 0.88870 1.25812 0.91990 0.91803 0.92734
1.81096 1.12280 1.11351 1.10523 0.90064 0.92617 0.94303 0.91499
0.94149 0.98470 0.99863 0.92512 0.86455 0.82290 0.80747 0.82346
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.22 9.94 71.98 0.72 -3.50 16
2 C 0.06 2.41 5.44 86.30 0.47 2.88 16
3 N -0.53 -23.15 3.82 -698.79 -2.67 -25.82 16
4 C 0.22 11.85 4.30 85.56 0.37 12.21 16
5 C -0.53 -30.41 8.31 25.60 0.21 -30.20 16
6 H 0.06 3.29 7.23 -2.91 -0.02 3.27 16
7 C 0.01 0.48 5.46 84.65 0.46 0.94 16
8 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16
9 Si 0.96 45.05 29.54 68.60 2.03 47.07 16
10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16
11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16
12 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16
13 C 0.14 4.87 3.73 38.67 0.14 5.02 16
14 C -0.17 -5.04 8.51 22.37 0.19 -4.85 16
15 C -0.07 -1.38 10.03 22.30 0.22 -1.16 16
16 C -0.12 -1.99 10.02 22.24 0.22 -1.77 16
17 C -0.06 -1.25 9.75 22.53 0.22 -1.03 16
18 C -0.05 -1.56 5.76 -21.15 -0.12 -1.69 16
19 C 0.29 10.98 14.81 88.33 1.31 12.29 16
20 N -0.48 -19.96 18.54 19.00 0.35 -19.61 16
21 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16
22 H 0.05 1.64 7.52 -2.39 -0.02 1.63 16
23 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16
24 H 0.07 2.86 6.60 -2.39 -0.02 2.84 16
25 H 0.04 1.42 7.06 -2.39 -0.02 1.41 16
26 H 0.00 -0.17 8.06 -2.39 -0.02 -0.19 16
27 H -0.02 -0.90 7.46 -2.39 -0.02 -0.92 16
28 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16
29 H 0.12 3.73 7.13 -2.91 -0.02 3.71 16
30 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16
31 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16
32 H 0.16 2.46 8.06 -2.92 -0.02 2.43 16
Total: -1.00 -69.73 282.39 5.52 -64.21
By element:
Atomic # 1 Polarization: -1.00 SS G_CDS: 1.11 Total: 0.11 kcal
Atomic # 6 Polarization: -15.26 SS G_CDS: 4.42 Total: -10.85 kcal
Atomic # 7 Polarization: -98.51 SS G_CDS: -2.03 Total: -100.55 kcal
Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal
Total: -69.73 5.52 -64.21 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000044413377.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.427 kcal
(2) G-P(sol) polarization free energy of solvation -69.729 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.698 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.210 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.217 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds