Wall clock time and date at job start Mon Mar 30 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.47434 * 2 1 4 4 C 1.46900 * 111.00023 * 193.95579 * 3 2 1 5 5 C 1.50697 * 109.47319 * 66.04282 * 4 3 2 6 6 H 1.08002 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00022 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00015 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00208 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47188 * 59.99953 * 9 7 5 11 11 H 1.48502 * 109.47340 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47085 * 299.99995 * 9 7 5 13 13 C 1.39026 * 111.00290 * 69.99472 * 3 2 1 14 14 C 1.38892 * 120.16792 * 63.95779 * 13 3 2 15 15 C 1.38012 * 120.06793 * 180.02562 * 14 13 3 16 16 C 1.38575 * 120.42379 * 359.97438 * 15 14 13 17 17 C 1.37791 * 120.34748 * 359.97438 * 16 15 14 18 18 C 1.39738 * 119.91663 * 0.03083 * 17 16 15 19 19 C 1.43200 * 120.20419 * 179.97438 * 18 17 16 20 20 N 4.44256 * 66.70130 * 348.06811 * 2 1 3 21 21 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46871 * 300.00305 * 1 2 3 23 23 H 1.09002 * 109.46669 * 60.00182 * 1 2 3 24 24 H 1.08995 * 109.47093 * 239.99448 * 2 1 3 25 25 H 1.09000 * 109.47127 * 119.99557 * 2 1 3 26 26 H 1.08996 * 109.46638 * 186.04436 * 4 3 2 27 27 H 1.09000 * 109.46774 * 306.04475 * 4 3 2 28 28 H 0.97004 * 120.00144 * 180.02562 * 8 7 5 29 29 H 1.07993 * 119.96196 * 0.02562 * 14 13 3 30 30 H 1.07999 * 119.79057 * 179.97438 * 15 14 13 31 31 H 1.07999 * 119.82853 * 179.72991 * 16 15 14 32 32 H 1.07991 * 120.04253 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4501 1.4376 -0.3308 5 6 3.6536 0.9853 -1.7538 6 1 2.8053 0.6880 -2.3525 7 6 4.9229 0.9500 -2.2910 8 7 5.9559 1.3115 -1.5618 9 14 5.1753 0.3887 -4.0547 10 1 4.4225 1.2825 -4.9712 11 1 6.6212 0.4420 -4.3891 12 1 4.6827 -1.0040 -4.2062 13 6 1.7673 2.0028 1.2196 14 6 2.3713 1.5325 2.3785 15 6 2.1188 2.1471 3.5882 16 6 1.2638 3.2354 3.6574 17 6 0.6561 3.7169 2.5183 18 6 0.9015 3.1055 1.2859 19 6 0.2728 3.6005 0.0983 20 7 -0.2271 3.9921 -0.8436 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.8114 2.4599 -0.2192 27 1 4.0028 0.7814 0.3416 28 1 6.8489 1.2870 -1.9399 29 1 3.0392 0.6851 2.3329 30 1 2.5905 1.7774 4.4866 31 1 1.0696 3.7063 4.6097 32 1 -0.0097 4.5651 2.5780 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044413377.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:23 Heat of formation + Delta-G solvation = 40.217284 kcal Electronic energy + Delta-G solvation = -15498.431913 eV Core-core repulsion = 13037.345095 eV Total energy + Delta-G solvation = -2461.086819 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.01803 -37.91501 -37.22623 -34.82579 -32.22427 -32.05700 -30.82543 -28.05715 -24.52664 -24.44236 -24.16551 -21.42685 -19.73274 -18.51522 -17.29415 -16.83966 -16.57033 -15.92143 -15.68327 -15.16640 -14.74468 -14.60952 -14.33965 -14.10422 -13.95713 -13.64684 -13.13453 -13.00672 -12.91730 -12.71264 -12.43951 -12.41906 -12.18845 -11.98410 -11.85297 -11.39120 -10.65832 -9.86005 -9.55306 -9.23857 -8.24896 -6.34570 -0.08975 0.41365 1.37236 1.40213 1.47979 1.81616 2.09864 2.36191 2.96606 3.04236 3.08538 3.15402 4.04740 4.15345 4.22327 4.34732 4.50314 4.55182 4.56626 4.74534 4.90313 4.97835 5.04104 5.08912 5.22422 5.32472 5.39549 5.51567 5.55879 5.62946 5.92431 6.04592 6.17045 6.60848 6.78446 6.78746 7.34337 8.85453 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027388 B = 0.007844 C = 0.007354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.091735 B = 3568.694243 C = 3806.550422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.063 3.937 3 N -0.529 5.529 4 C 0.223 3.777 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.964 3.036 10 H -0.277 1.277 11 H -0.278 1.278 12 H -0.264 1.264 13 C 0.135 3.865 14 C -0.169 4.169 15 C -0.069 4.069 16 C -0.120 4.120 17 C -0.058 4.058 18 C -0.049 4.049 19 C 0.291 3.709 20 N -0.476 5.476 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.038 0.962 24 H 0.066 0.934 25 H 0.040 0.960 26 H -0.003 1.003 27 H -0.016 1.016 28 H 0.266 0.734 29 H 0.117 0.883 30 H 0.160 0.840 31 H 0.175 0.825 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.671 -0.032 13.527 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.063 4.063 3 N -0.252 5.252 4 C 0.099 3.901 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.789 3.211 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.189 1.189 13 C 0.038 3.962 14 C -0.189 4.189 15 C -0.088 4.088 16 C -0.137 4.137 17 C -0.079 4.079 18 C -0.053 4.053 19 C -0.023 4.023 20 N -0.153 5.153 21 H 0.099 0.901 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.015 0.985 27 H 0.001 0.999 28 H 0.075 0.925 29 H 0.135 0.865 30 H 0.177 0.823 31 H 0.193 0.807 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.504 0.826 11.661 15.066 hybrid contribution 1.305 -0.839 -0.495 1.628 sum -8.199 -0.013 11.166 13.853 Atomic orbital electron populations 1.21693 0.93958 1.02264 1.01181 1.22058 0.96095 0.87143 1.01009 1.59510 1.19881 1.18292 1.27473 1.19314 0.81100 0.94491 0.95188 1.21374 0.92808 1.44294 0.98256 0.92476 1.25803 0.95566 0.95397 1.02282 1.70049 0.99370 1.48804 1.38485 0.85523 0.77130 0.79144 0.79351 1.20267 1.20354 1.18914 1.19166 0.93813 0.93438 0.89778 1.21782 1.01391 1.02184 0.93531 1.21632 0.95583 0.94385 0.97174 1.21474 0.96544 0.96479 0.99221 1.21438 0.98353 0.98695 0.89407 1.16358 1.01572 0.98530 0.88870 1.25812 0.91990 0.91803 0.92734 1.81096 1.12280 1.11351 1.10523 0.90064 0.92617 0.94303 0.91499 0.94149 0.98470 0.99863 0.92512 0.86455 0.82290 0.80747 0.82346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.94 71.98 0.72 -3.50 16 2 C 0.06 2.41 5.44 86.30 0.47 2.88 16 3 N -0.53 -23.15 3.82 -698.79 -2.67 -25.82 16 4 C 0.22 11.85 4.30 85.56 0.37 12.21 16 5 C -0.53 -30.41 8.31 25.60 0.21 -30.20 16 6 H 0.06 3.29 7.23 -2.91 -0.02 3.27 16 7 C 0.01 0.48 5.46 84.65 0.46 0.94 16 8 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 9 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 13 C 0.14 4.87 3.73 38.67 0.14 5.02 16 14 C -0.17 -5.04 8.51 22.37 0.19 -4.85 16 15 C -0.07 -1.38 10.03 22.30 0.22 -1.16 16 16 C -0.12 -1.99 10.02 22.24 0.22 -1.77 16 17 C -0.06 -1.25 9.75 22.53 0.22 -1.03 16 18 C -0.05 -1.56 5.76 -21.15 -0.12 -1.69 16 19 C 0.29 10.98 14.81 88.33 1.31 12.29 16 20 N -0.48 -19.96 18.54 19.00 0.35 -19.61 16 21 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.05 1.64 7.52 -2.39 -0.02 1.63 16 23 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.07 2.86 6.60 -2.39 -0.02 2.84 16 25 H 0.04 1.42 7.06 -2.39 -0.02 1.41 16 26 H 0.00 -0.17 8.06 -2.39 -0.02 -0.19 16 27 H -0.02 -0.90 7.46 -2.39 -0.02 -0.92 16 28 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.12 3.73 7.13 -2.91 -0.02 3.71 16 30 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 31 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.16 2.46 8.06 -2.92 -0.02 2.43 16 Total: -1.00 -69.73 282.39 5.52 -64.21 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: 1.11 Total: 0.11 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 4.42 Total: -10.85 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -2.03 Total: -100.55 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -69.73 5.52 -64.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044413377.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.427 kcal (2) G-P(sol) polarization free energy of solvation -69.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds