Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47173 * 2 1 4 4 H 1.09004 * 109.47231 * 54.99617 * 3 2 1 5 5 C 1.47203 * 109.47143 * 174.99724 * 3 2 1 6 6 N 3.43550 * 154.82382 * 8.43868 * 2 1 3 7 7 N 1.46497 * 109.47077 * 294.99463 * 3 2 1 8 8 C 1.38865 * 119.99860 * 154.99822 * 7 3 2 9 9 C 1.39574 * 119.84117 * 180.02562 * 8 7 3 10 10 C 1.36335 * 120.15875 * 180.02562 * 9 8 7 11 11 C 1.40886 * 119.83947 * 0.25591 * 10 9 8 12 12 C 1.41135 * 120.15680 * 179.72157 * 11 10 9 13 13 H 1.08000 * 120.00157 * 150.12842 * 12 11 10 14 14 C 1.39876 * 119.99763 * 330.12558 * 12 11 10 15 15 N 1.30896 * 119.99615 * 161.72114 * 14 12 11 16 16 Si 1.86796 * 119.99980 * 341.72244 * 14 12 11 17 17 H 1.48499 * 109.47361 * 95.41642 * 16 14 12 18 18 H 1.48503 * 109.47035 * 215.41285 * 16 14 12 19 19 H 1.48499 * 109.47536 * 335.41174 * 16 14 12 20 20 C 1.40890 * 119.68505 * 359.44826 * 11 10 9 21 21 C 1.36332 * 119.83558 * 0.54681 * 20 11 10 22 22 H 1.09007 * 109.46863 * 60.00276 * 1 2 3 23 23 H 1.08999 * 109.46889 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47411 * 300.00709 * 1 2 3 25 25 H 1.08997 * 109.47411 * 239.99291 * 2 1 3 26 26 H 1.09007 * 109.46863 * 119.99724 * 2 1 3 27 27 H 0.97000 * 120.00425 * 335.00424 * 7 3 2 28 28 H 1.08001 * 119.91582 * 0.02562 * 9 8 7 29 29 H 1.08001 * 120.07802 * 179.97438 * 10 9 8 30 30 H 0.97008 * 120.00200 * 180.02562 * 15 14 12 31 31 H 1.07999 * 120.07563 * 180.27526 * 20 11 10 32 32 H 1.08003 * 119.91954 * 179.72201 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5071 1.4443 0.1210 6 7 4.6392 1.4457 0.2145 7 7 1.6526 2.0974 -1.2518 8 6 1.5219 3.4790 -1.3011 9 6 1.1521 4.0995 -2.4954 10 6 1.0224 5.4556 -2.5511 11 6 1.2679 6.2312 -1.4009 12 6 1.1413 7.6359 -1.4526 13 1 0.8500 8.1847 -0.5693 14 6 1.3933 8.3172 -2.6480 15 7 0.9460 9.5362 -2.8133 16 14 2.3682 7.4875 -4.0083 17 1 1.4325 6.8691 -4.9816 18 1 3.2080 8.4969 -4.7019 19 1 3.2393 6.4368 -3.4230 20 6 1.6347 5.5974 -0.1972 21 6 1.7605 4.2405 -0.1561 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.4872 1.5660 -2.0463 28 1 0.9682 3.5040 -3.3774 29 1 0.7365 5.9344 -3.4760 30 1 1.1204 10.0086 -3.6424 31 1 1.8201 6.1855 0.6894 32 1 2.0460 3.7536 0.7647 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601334.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = 24.715311 kcal Electronic energy + Delta-G solvation = -15103.511435 eV Core-core repulsion = 12641.752400 eV Total energy + Delta-G solvation = -2461.759035 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27652 -38.46739 -36.58386 -35.28348 -33.57436 -31.68676 -30.74977 -28.17263 -25.82735 -23.65697 -22.34588 -22.23838 -19.39197 -18.78457 -18.28095 -17.15668 -16.76472 -15.68454 -15.24874 -15.07205 -14.62873 -14.54079 -14.34577 -14.15521 -14.02492 -13.89081 -13.49573 -13.08080 -12.83038 -12.59098 -12.47041 -12.08030 -11.94980 -11.79163 -11.65115 -11.41099 -11.07180 -10.61632 -9.56520 -8.77987 -8.41762 -6.20043 0.88310 0.94150 1.27625 1.42981 1.50829 1.61955 1.77780 2.16752 2.67881 2.87686 3.06360 3.62235 3.94558 4.09859 4.32549 4.35497 4.52711 4.70507 4.74482 4.94243 4.98169 5.06679 5.22497 5.25466 5.33451 5.54414 5.56251 5.59670 5.78044 5.99828 6.20790 6.42017 6.54198 6.61413 6.87419 6.96074 7.12494 8.32479 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038629 B = 0.006445 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.676209 B = 4343.655770 C = 4435.504390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.252 3.748 4 H 0.129 0.871 5 C 0.213 3.787 6 N -0.488 5.488 7 N -0.728 5.728 8 C 0.116 3.884 9 C -0.144 4.144 10 C -0.204 4.204 11 C 0.030 3.970 12 C -0.489 4.489 13 H 0.049 0.951 14 C 0.043 3.957 15 N -0.868 5.868 16 Si 0.962 3.038 17 H -0.256 1.256 18 H -0.285 1.285 19 H -0.258 1.258 20 C -0.177 4.177 21 C -0.150 4.150 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.410 0.590 28 H 0.129 0.871 29 H 0.095 0.905 30 H 0.288 0.712 31 H 0.099 0.901 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.955 -18.916 1.948 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.141 3.859 4 H 0.146 0.854 5 C -0.107 4.107 6 N -0.166 5.166 7 N -0.363 5.363 8 C 0.017 3.983 9 C -0.166 4.166 10 C -0.224 4.224 11 C 0.027 3.973 12 C -0.521 4.521 13 H 0.068 0.932 14 C -0.168 4.168 15 N -0.496 5.496 16 Si 0.787 3.213 17 H -0.181 1.181 18 H -0.212 1.212 19 H -0.182 1.182 20 C -0.197 4.197 21 C -0.172 4.172 22 H 0.075 0.925 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.247 0.753 28 H 0.147 0.853 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.275 -18.665 2.147 18.791 hybrid contribution -0.009 0.651 -0.800 1.031 sum -0.284 -18.014 1.348 18.067 Atomic orbital electron populations 1.21730 0.93251 1.02769 1.02775 1.21732 0.97753 0.90743 1.04919 1.18692 0.78600 0.97843 0.90765 0.85386 1.31138 0.96729 0.91199 0.91615 1.81148 1.15167 1.10490 1.09783 1.43870 1.78135 1.02336 1.11987 1.17384 1.03292 0.84071 0.93554 1.20206 1.05537 0.93861 0.96988 1.20722 1.09207 0.94331 0.98159 1.17785 0.93419 0.93052 0.93083 1.19304 1.43677 0.92078 0.97002 0.93243 1.26702 0.94414 0.95129 1.00571 1.69779 1.38131 1.13785 1.27953 0.85537 0.79457 0.78233 0.78083 1.18129 1.21164 1.18208 1.20787 1.06401 0.94664 0.97818 1.20309 1.06204 0.93311 0.97329 0.92510 0.90840 0.92146 0.89934 0.88413 0.75323 0.85272 0.88702 0.90213 0.88290 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.80 71.98 0.71 -0.82 16 2 C -0.11 -1.23 5.43 30.59 0.17 -1.07 16 3 C 0.25 4.63 2.14 43.19 0.09 4.72 16 4 H 0.13 2.19 6.45 -2.38 -0.02 2.17 16 5 C 0.21 5.45 14.73 89.44 1.32 6.77 16 6 N -0.49 -15.70 18.54 20.01 0.37 -15.33 16 7 N -0.73 -16.65 4.63 -327.16 -1.52 -18.16 16 8 C 0.12 3.87 6.63 38.67 0.26 4.13 16 9 C -0.14 -5.40 9.82 22.15 0.22 -5.18 16 10 C -0.20 -9.43 7.11 22.47 0.16 -9.27 16 11 C 0.03 1.52 5.10 -21.27 -0.11 1.41 16 12 C -0.49 -28.29 9.55 23.38 0.22 -28.07 16 13 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 14 C 0.04 2.41 5.40 85.23 0.46 2.87 16 15 N -0.87 -49.81 13.93 21.82 0.30 -49.50 16 16 Si 0.96 44.54 24.51 68.60 1.68 46.22 16 17 H -0.26 -11.00 6.70 99.48 0.67 -10.33 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.26 -12.25 6.87 99.48 0.68 -11.57 16 20 C -0.18 -8.01 9.74 22.47 0.22 -7.79 16 21 C -0.15 -5.53 9.04 22.14 0.20 -5.33 16 22 H 0.06 0.71 7.75 -2.38 -0.02 0.69 16 23 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.41 7.50 8.60 -92.71 -0.80 6.70 16 28 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 29 H 0.10 4.45 4.73 -2.91 -0.01 4.43 16 30 H 0.29 14.94 8.30 -92.70 -0.77 14.17 16 31 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.12 3.79 6.12 -2.91 -0.02 3.78 16 Total: -1.00 -67.13 275.48 5.03 -62.10 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.28 Total: 12.30 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 3.91 Total: -37.62 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -0.84 Total: -83.00 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.68 Total: 46.22 kcal Total: -67.13 5.03 -62.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601334.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.817 kcal (2) G-P(sol) polarization free energy of solvation -67.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds