Wall clock time and date at job start Mon Mar 30 2020 03:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.46763 * 2 1 4 4 C 1.47192 * 109.47070 * 240.00022 * 2 1 3 5 5 N 2.60795 * 109.47040 * 240.00049 * 2 1 3 6 6 C 1.52994 * 109.46846 * 120.00241 * 2 1 3 7 7 N 1.46509 * 109.47027 * 294.99964 * 6 2 1 8 8 C 1.38856 * 120.00024 * 180.02562 * 7 6 2 9 9 C 1.39575 * 119.84142 * 359.72444 * 8 7 6 10 10 C 1.36333 * 120.16072 * 179.72207 * 9 8 7 11 11 C 1.40892 * 119.83676 * 0.55211 * 10 9 8 12 12 C 1.41136 * 120.15884 * 179.70176 * 11 10 9 13 13 H 1.08001 * 120.00102 * 204.62978 * 12 11 10 14 14 C 1.39865 * 119.99934 * 24.62909 * 12 11 10 15 15 N 1.30910 * 120.00035 * 17.95384 * 14 12 11 16 16 Si 1.86804 * 120.00050 * 197.95680 * 14 12 11 17 17 H 1.48496 * 109.46838 * 59.99988 * 16 14 12 18 18 H 1.48503 * 109.46764 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47057 * 299.99694 * 16 14 12 20 20 C 1.40894 * 119.68682 * 359.71855 * 11 10 9 21 21 C 1.36338 * 119.83300 * 0.02562 * 20 11 10 22 22 H 1.08998 * 109.46649 * 59.99990 * 1 2 3 23 23 H 1.09000 * 109.46704 * 299.99773 * 1 2 3 24 24 H 1.08996 * 109.46763 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47703 * 54.99968 * 6 2 1 26 26 H 1.09000 * 109.47322 * 175.00278 * 6 2 1 27 27 H 0.96992 * 120.00108 * 359.97438 * 7 6 2 28 28 H 1.08004 * 119.92081 * 359.97438 * 9 8 7 29 29 H 1.07994 * 120.08650 * 180.27506 * 10 9 8 30 30 H 0.96999 * 120.00227 * 180.02562 * 15 14 12 31 31 H 1.08000 * 120.07882 * 179.97438 * 20 11 10 32 32 H 1.08003 * 119.91585 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1294 6 6 2.0400 -0.7213 1.2492 7 7 1.6524 0.0353 2.4424 8 6 2.0067 -0.4267 3.7030 9 6 2.7272 -1.6153 3.8298 10 6 3.0835 -2.0721 5.0640 11 6 2.7124 -1.3471 6.2137 12 6 3.0722 -1.8169 7.4950 13 1 2.4919 -1.5278 8.3588 14 6 4.1802 -2.6570 7.6462 15 7 5.0801 -2.7304 6.6983 16 14 4.3759 -3.6743 9.2007 17 1 3.2123 -4.5855 9.3456 18 1 5.6235 -4.4751 9.1143 19 1 4.4471 -2.7713 10.3774 20 6 1.9802 -0.1510 6.0783 21 6 1.6355 0.2964 4.8374 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6054 -1.7198 1.2951 26 1 3.1263 -0.7995 1.2056 27 1 1.1489 0.8594 2.3518 28 1 3.0068 -2.1726 2.9479 29 1 3.6448 -2.9896 5.1605 30 1 5.8483 -3.3133 6.8029 31 1 1.6922 0.4096 6.9553 32 1 1.0739 1.2129 4.7321 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052684615.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:01 Heat of formation + Delta-G solvation = 39.897765 kcal Electronic energy + Delta-G solvation = -14747.568769 eV Core-core repulsion = 12286.468095 eV Total energy + Delta-G solvation = -2461.100674 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.40159 -37.29318 -35.46835 -33.65327 -32.02304 -29.48976 -28.63658 -26.43630 -24.38663 -22.82316 -21.03468 -19.91286 -17.77508 -17.22207 -16.06532 -15.28881 -14.98982 -14.93400 -13.93089 -13.70007 -13.42936 -13.09813 -12.77962 -12.63111 -12.53837 -12.05399 -11.88313 -11.80437 -11.48754 -11.15427 -11.01776 -10.98834 -10.82198 -10.47616 -9.72912 -9.30835 -9.25263 -8.57790 -7.51545 -6.66384 -6.43532 -4.05703 2.60681 2.65499 2.91648 3.08457 3.14028 3.16992 3.34318 3.64726 4.04479 4.45631 4.67368 4.74171 4.80210 4.99466 5.52309 5.56189 5.76770 5.86150 5.93789 6.00887 6.24239 6.29935 6.87009 6.91930 7.17960 7.33627 7.41966 7.50767 7.66744 7.81331 8.13320 8.24469 8.44572 8.64484 8.76494 9.04371 9.12750 10.35681 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046378 B = 0.005019 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.584855 B = 5577.748195 C = 6038.108374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.006 4.006 3 H 0.117 0.883 4 C 0.218 3.782 5 N -0.437 5.437 6 C 0.147 3.853 7 N -0.759 5.759 8 C 0.088 3.912 9 C -0.162 4.162 10 C -0.126 4.126 11 C 0.077 3.923 12 C -0.468 4.468 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.807 5.807 16 Si 0.903 3.097 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.189 4.189 21 C -0.155 4.155 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.386 0.614 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.277 0.723 31 H 0.092 0.908 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 4.288 -7.372 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 H 0.135 0.865 4 C -0.101 4.101 5 N -0.113 5.113 6 C 0.020 3.980 7 N -0.396 5.396 8 C -0.009 4.009 9 C -0.184 4.184 10 C -0.146 4.146 11 C 0.074 3.926 12 C -0.499 4.499 13 H 0.091 0.909 14 C -0.140 4.140 15 N -0.434 5.434 16 Si 0.728 3.272 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.209 4.209 21 C -0.177 4.177 22 H 0.080 0.920 23 H 0.099 0.901 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.219 0.781 28 H 0.106 0.894 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.214 3.209 -8.910 10.811 hybrid contribution -0.016 0.043 1.004 1.005 sum -5.230 3.252 -7.906 10.021 Atomic orbital electron populations 1.21813 0.91621 1.03578 1.03147 1.19064 0.97504 0.99531 0.86710 0.86487 1.28990 0.93166 0.93583 0.94328 1.81214 1.08936 1.09303 1.11842 1.20912 0.99225 0.94969 0.82883 1.43694 1.65920 1.28040 1.01964 1.17265 1.03402 0.96685 0.83513 1.20103 1.04233 0.96773 0.97247 1.20939 1.02142 1.00477 0.91056 1.17504 0.91495 0.90243 0.93381 1.19356 1.10441 1.25962 0.94123 0.90929 1.25797 0.94724 0.95823 0.97659 1.69845 1.08058 1.31880 1.33587 0.86463 0.78152 0.80282 0.82301 1.19063 1.20578 1.19243 1.20545 1.07580 0.97897 0.94866 1.19788 1.05936 0.99790 0.92149 0.91956 0.90120 0.91558 0.92443 0.92578 0.78078 0.89422 0.86414 0.91218 0.89028 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.02 37.16 0.34 -0.76 16 2 C -0.01 -0.06 2.80 -93.41 -0.26 -0.32 16 3 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.22 2.54 14.64 -20.76 -0.30 2.23 16 5 N -0.44 -6.29 18.54 42.15 0.78 -5.50 16 6 C 0.15 1.87 4.24 -4.04 -0.02 1.85 16 7 N -0.76 -11.29 5.43 -58.50 -0.32 -11.61 16 8 C 0.09 1.78 6.67 -83.69 -0.56 1.22 16 9 C -0.16 -3.64 9.23 -39.77 -0.37 -4.01 16 10 C -0.13 -3.24 8.64 -39.26 -0.34 -3.58 16 11 C 0.08 2.03 5.57 -106.79 -0.60 1.43 16 12 C -0.47 -12.53 9.03 -37.87 -0.34 -12.87 16 13 H 0.07 1.87 7.91 -52.49 -0.41 1.46 16 14 C 0.08 1.92 5.13 -17.34 -0.09 1.84 16 15 N -0.81 -21.23 10.96 55.54 0.61 -20.62 16 16 Si 0.90 19.03 29.60 -169.99 -5.03 14.00 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 18 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 C -0.19 -4.51 9.74 -39.26 -0.38 -4.90 16 21 C -0.15 -3.27 9.82 -39.77 -0.39 -3.66 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.08 0.58 7.18 -51.93 -0.37 0.21 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.77 7.92 -51.93 -0.41 0.36 16 26 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 27 H 0.39 4.73 7.65 -40.82 -0.31 4.42 16 28 H 0.09 1.80 6.68 -52.48 -0.35 1.45 16 29 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 30 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 31 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 32 H 0.09 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 280.65 15.07 4.23 4.23 Total: -1.00 -29.03 280.65 -6.89 -35.91 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.85 Total: 5.10 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -3.31 Total: -21.51 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 1.07 Total: -37.73 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.03 -6.89 -35.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052684615.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.810 kcal (2) G-P(sol) polarization free energy of solvation -29.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds