Wall clock time and date at job start Mon Mar 30 2020 03:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.46763 * 2 1 4 4 C 1.47192 * 109.47070 * 240.00022 * 2 1 3 5 5 N 2.60795 * 109.47040 * 240.00049 * 2 1 3 6 6 C 1.52994 * 109.46846 * 120.00241 * 2 1 3 7 7 N 1.46509 * 109.47027 * 294.99964 * 6 2 1 8 8 C 1.38856 * 120.00024 * 180.02562 * 7 6 2 9 9 C 1.39575 * 119.84142 * 359.72444 * 8 7 6 10 10 C 1.36333 * 120.16072 * 179.72207 * 9 8 7 11 11 C 1.40892 * 119.83676 * 0.55211 * 10 9 8 12 12 C 1.41136 * 120.15884 * 179.70176 * 11 10 9 13 13 H 1.08001 * 120.00102 * 204.62978 * 12 11 10 14 14 C 1.39865 * 119.99934 * 24.62909 * 12 11 10 15 15 N 1.30910 * 120.00035 * 17.95384 * 14 12 11 16 16 Si 1.86804 * 120.00050 * 197.95680 * 14 12 11 17 17 H 1.48496 * 109.46838 * 59.99988 * 16 14 12 18 18 H 1.48503 * 109.46764 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47057 * 299.99694 * 16 14 12 20 20 C 1.40894 * 119.68682 * 359.71855 * 11 10 9 21 21 C 1.36338 * 119.83300 * 0.02562 * 20 11 10 22 22 H 1.08998 * 109.46649 * 59.99990 * 1 2 3 23 23 H 1.09000 * 109.46704 * 299.99773 * 1 2 3 24 24 H 1.08996 * 109.46763 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47703 * 54.99968 * 6 2 1 26 26 H 1.09000 * 109.47322 * 175.00278 * 6 2 1 27 27 H 0.96992 * 120.00108 * 359.97438 * 7 6 2 28 28 H 1.08004 * 119.92081 * 359.97438 * 9 8 7 29 29 H 1.07994 * 120.08650 * 180.27506 * 10 9 8 30 30 H 0.96999 * 120.00227 * 180.02562 * 15 14 12 31 31 H 1.08000 * 120.07882 * 179.97438 * 20 11 10 32 32 H 1.08003 * 119.91585 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1294 6 6 2.0400 -0.7213 1.2492 7 7 1.6524 0.0353 2.4424 8 6 2.0067 -0.4267 3.7030 9 6 2.7272 -1.6153 3.8298 10 6 3.0835 -2.0721 5.0640 11 6 2.7124 -1.3471 6.2137 12 6 3.0722 -1.8169 7.4950 13 1 2.4919 -1.5278 8.3588 14 6 4.1802 -2.6570 7.6462 15 7 5.0801 -2.7304 6.6983 16 14 4.3759 -3.6743 9.2007 17 1 3.2123 -4.5855 9.3456 18 1 5.6235 -4.4751 9.1143 19 1 4.4471 -2.7713 10.3774 20 6 1.9802 -0.1510 6.0783 21 6 1.6355 0.2964 4.8374 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6054 -1.7198 1.2951 26 1 3.1263 -0.7995 1.2056 27 1 1.1489 0.8594 2.3518 28 1 3.0068 -2.1726 2.9479 29 1 3.6448 -2.9896 5.1605 30 1 5.8483 -3.3133 6.8029 31 1 1.6922 0.4096 6.9553 32 1 1.0739 1.2129 4.7321 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052684615.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:01 Heat of formation + Delta-G solvation = 23.192374 kcal Electronic energy + Delta-G solvation = -14748.293169 eV Core-core repulsion = 12286.468095 eV Total energy + Delta-G solvation = -2461.825074 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.87516 -38.52554 -36.78884 -35.24228 -33.40802 -31.29176 -30.27772 -27.54965 -25.96994 -24.01936 -22.77672 -21.55890 -19.10592 -18.83481 -17.40030 -16.71930 -16.52988 -16.05351 -15.59616 -14.88070 -14.60120 -14.45796 -14.20847 -13.95840 -13.77098 -13.56352 -13.48500 -13.00262 -12.71536 -12.64619 -12.59098 -12.28577 -12.07264 -11.85671 -11.54182 -11.12137 -11.02105 -10.25616 -9.34100 -8.52014 -8.11641 -5.97018 1.15804 1.24820 1.41702 1.52186 1.62842 1.65079 1.74425 2.29196 2.65186 2.88480 3.32125 3.82634 3.90076 4.01606 4.28732 4.51333 4.59233 4.79109 4.81497 4.98031 5.07416 5.12116 5.20214 5.31731 5.38283 5.50722 5.72566 5.86141 6.02635 6.23783 6.43684 6.51230 6.69565 6.90791 7.12644 7.21449 7.41049 8.50761 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046378 B = 0.005019 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.584855 B = 5577.748195 C = 6038.108374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.009 3.991 3 H 0.149 0.851 4 C 0.241 3.759 5 N -0.488 5.488 6 C 0.143 3.857 7 N -0.741 5.741 8 C 0.116 3.884 9 C -0.176 4.176 10 C -0.148 4.148 11 C 0.034 3.966 12 C -0.508 4.508 13 H 0.068 0.932 14 C 0.033 3.967 15 N -0.843 5.843 16 Si 0.973 3.027 17 H -0.263 1.263 18 H -0.272 1.272 19 H -0.261 1.261 20 C -0.195 4.195 21 C -0.159 4.159 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.405 0.595 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.281 0.719 31 H 0.097 0.903 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 5.744 -8.254 12.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.012 4.012 3 H 0.167 0.833 4 C -0.076 4.076 5 N -0.164 5.164 6 C 0.017 3.983 7 N -0.378 5.378 8 C 0.017 3.983 9 C -0.198 4.198 10 C -0.168 4.168 11 C 0.031 3.969 12 C -0.539 4.539 13 H 0.086 0.914 14 C -0.179 4.179 15 N -0.472 5.472 16 Si 0.795 3.205 17 H -0.188 1.188 18 H -0.197 1.197 19 H -0.186 1.186 20 C -0.216 4.216 21 C -0.181 4.181 22 H 0.099 0.901 23 H 0.110 0.890 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.242 0.758 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.500 4.699 -9.835 12.690 hybrid contribution 0.274 -0.286 1.096 1.166 sum -6.225 4.412 -8.738 11.601 Atomic orbital electron populations 1.21845 0.89979 1.03554 1.04621 1.19095 0.98532 1.00060 0.83536 0.83338 1.29371 0.91767 0.92411 0.94092 1.81249 1.10658 1.10860 1.13653 1.20969 0.98780 0.95083 0.83515 1.43614 1.64955 1.28609 1.00640 1.17337 1.00415 0.94972 0.85624 1.20258 1.04904 0.98085 0.96602 1.20851 1.03272 1.00272 0.92418 1.17820 0.93512 0.91862 0.93688 1.19599 1.11622 1.28265 0.94435 0.91382 1.26577 0.93945 0.96453 1.00940 1.69919 1.08685 1.32919 1.35638 0.85390 0.78231 0.78568 0.78288 1.18809 1.19693 1.18571 1.20782 1.06981 0.97208 0.96583 1.20126 1.05767 1.01063 0.91143 0.90117 0.89027 0.92421 0.93048 0.93593 0.75789 0.87994 0.88798 0.90896 0.88495 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.02 71.99 0.65 -0.92 16 2 C 0.01 0.13 2.80 -12.60 -0.04 0.10 16 3 H 0.15 1.33 8.14 -2.39 -0.02 1.32 16 4 C 0.24 5.03 14.64 89.44 1.31 6.34 16 5 N -0.49 -13.39 18.54 20.00 0.37 -13.02 16 6 C 0.14 3.19 4.24 86.38 0.37 3.56 16 7 N -0.74 -19.13 5.43 -338.99 -1.84 -20.97 16 8 C 0.12 4.41 6.67 38.67 0.26 4.67 16 9 C -0.18 -7.87 9.23 22.15 0.20 -7.67 16 10 C -0.15 -7.84 8.64 22.48 0.19 -7.65 16 11 C 0.03 1.85 5.57 -21.27 -0.12 1.73 16 12 C -0.51 -28.28 9.03 23.38 0.21 -28.07 16 13 H 0.07 3.66 7.91 -2.91 -0.02 3.64 16 14 C 0.03 1.71 5.13 85.22 0.44 2.15 16 15 N -0.84 -46.17 10.96 21.82 0.24 -45.93 16 16 Si 0.97 40.05 29.60 68.60 2.03 42.08 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 18 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 20 C -0.20 -9.31 9.74 22.48 0.22 -9.09 16 21 C -0.16 -6.31 9.82 22.15 0.22 -6.09 16 22 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 23 H 0.09 0.87 7.18 -2.39 -0.02 0.85 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 1.26 7.92 -2.39 -0.02 1.24 16 26 H 0.05 1.17 7.93 -2.39 -0.02 1.15 16 27 H 0.41 7.76 7.65 -92.71 -0.71 7.05 16 28 H 0.10 4.15 6.68 -2.91 -0.02 4.13 16 29 H 0.09 5.33 6.16 -2.91 -0.02 5.31 16 30 H 0.28 14.09 8.30 -92.71 -0.77 13.33 16 31 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 32 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -65.71 280.65 5.13 -60.58 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.42 Total: 18.20 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 3.91 Total: -40.94 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.23 Total: -79.92 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -65.71 5.13 -60.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052684615.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.771 kcal (2) G-P(sol) polarization free energy of solvation -65.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds