Wall clock time and date at job start Mon Mar 30 2020 03:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.52998 * 109.47058 * 270.00111 * 3 2 1 5 5 C 1.50703 * 109.47204 * 180.02562 * 4 3 2 6 6 H 1.08007 * 119.99587 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00252 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00312 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99888 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47135 * 90.00014 * 9 7 5 11 11 H 1.48499 * 109.47132 * 210.00033 * 9 7 5 12 12 H 1.48503 * 109.47074 * 329.99750 * 9 7 5 13 13 C 1.39185 * 119.99958 * 179.97438 * 2 1 3 14 14 C 1.39179 * 119.92515 * 0.02562 * 13 2 1 15 15 C 1.37650 * 120.07100 * 179.97438 * 14 13 2 16 16 C 1.39799 * 119.92913 * 0.02562 * 15 14 13 17 17 C 1.43205 * 120.07701 * 179.97438 * 16 15 14 18 18 N 6.73122 * 120.00063 * 180.02562 * 2 1 3 19 19 C 1.39813 * 119.84996 * 0.27424 * 16 15 14 20 20 C 1.37655 * 119.92146 * 359.44481 * 19 16 15 21 21 H 1.09003 * 109.46925 * 269.99849 * 1 2 3 22 22 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 23 23 H 1.09003 * 109.47307 * 149.99910 * 1 2 3 24 24 H 1.08996 * 109.47153 * 29.99982 * 3 2 1 25 25 H 1.09002 * 109.47094 * 150.00008 * 3 2 1 26 26 H 1.09005 * 109.46783 * 299.99924 * 4 3 2 27 27 H 1.09002 * 109.47252 * 59.99994 * 4 3 2 28 28 H 0.96994 * 119.99863 * 179.97438 * 8 7 5 29 29 H 1.07994 * 119.96165 * 359.95647 * 14 13 2 30 30 H 1.08008 * 120.03484 * 179.97438 * 15 14 13 31 31 H 1.08001 * 120.04125 * 179.72493 * 19 16 15 32 32 H 1.07991 * 119.96081 * 180.27907 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2064 3.0153 -1.4425 6 1 3.4764 3.4830 -0.5071 7 6 3.5507 3.6126 -2.6365 8 7 4.2083 4.7515 -2.6366 9 14 3.0831 2.8040 -4.2543 10 1 1.7468 3.2898 -4.6824 11 1 4.0903 3.1492 -5.2895 12 1 3.0407 1.3302 -4.0770 13 6 2.1609 -1.2054 0.0005 14 6 1.4634 -2.4098 0.0005 15 6 2.1486 -3.6036 0.0005 16 6 3.5466 -3.6055 0.0011 17 6 4.2627 -4.8456 0.0016 18 7 4.8307 -5.8294 -0.0026 19 6 4.2441 -2.3938 0.0074 20 6 3.5527 -1.2035 0.0016 21 1 -0.3633 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5139 24 1 1.6084 2.0284 0.5138 25 1 3.1499 1.1385 0.5138 26 1 3.0415 0.9508 -1.9563 27 1 1.5000 1.8408 -1.9563 28 1 4.4508 5.1714 -3.4766 29 1 0.3835 -2.4077 0.0008 30 1 1.6068 -4.5380 0.0010 31 1 5.3241 -2.3916 0.0124 32 1 4.0908 -0.2672 0.0019 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061952330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:42 Heat of formation + Delta-G solvation = 55.841789 kcal Electronic energy + Delta-G solvation = -14916.772455 eV Core-core repulsion = 12456.363166 eV Total energy + Delta-G solvation = -2460.409289 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.65761 -37.06827 -35.67161 -33.22255 -31.39956 -30.69103 -29.69124 -26.72815 -24.83692 -22.37599 -21.89975 -20.32823 -18.70967 -17.21019 -16.60345 -15.60289 -14.76123 -14.69255 -14.05969 -13.81313 -13.72269 -13.63421 -13.52333 -12.78897 -12.69353 -12.46561 -12.18160 -11.95663 -11.88957 -11.63338 -11.12274 -10.80263 -10.58794 -10.09114 -9.91859 -9.49904 -9.36727 -8.94436 -8.65008 -7.09273 -6.15888 -4.16204 1.14675 1.53032 2.84499 3.16374 3.23362 3.32464 3.34620 3.36239 4.09554 4.17981 4.35736 4.88405 4.95596 5.17861 5.22176 5.39951 5.51046 5.61684 5.64722 5.77920 5.83196 6.06620 6.15150 6.29035 6.36521 6.45186 6.54913 6.80601 7.03237 7.12965 7.42440 7.62795 7.68814 7.73272 8.37219 8.86685 9.45955 10.96945 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.006263 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.680826 B = 4469.806212 C = 4945.876932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.616 5.616 3 C 0.125 3.875 4 C -0.027 4.027 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.265 1.265 13 C 0.258 3.742 14 C -0.215 4.215 15 C -0.019 4.019 16 C -0.120 4.120 17 C 0.272 3.728 18 N -0.455 5.455 19 C -0.017 4.017 20 C -0.199 4.199 21 H 0.049 0.951 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.022 0.978 27 H 0.013 0.987 28 H 0.265 0.735 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 -11.297 5.348 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.320 5.320 3 C 0.004 3.996 4 C -0.065 4.065 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.705 3.295 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.189 1.189 13 C 0.149 3.851 14 C -0.238 4.238 15 C -0.040 4.040 16 C -0.126 4.126 17 C -0.041 4.041 18 N -0.132 5.132 19 C -0.038 4.038 20 C -0.221 4.221 21 H 0.068 0.932 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.425 -12.436 5.233 14.944 hybrid contribution -0.463 0.227 -1.036 1.157 sum -6.888 -12.209 4.197 14.633 Atomic orbital electron populations 1.21707 0.79954 1.02953 1.01029 1.47030 1.05343 1.04164 1.75452 1.21775 0.95944 0.81867 1.00000 1.19949 0.96861 0.97380 0.92357 1.20959 1.36188 1.04639 0.94668 0.90813 1.24970 0.94369 0.94536 0.99130 1.69897 1.39411 1.17299 1.27109 0.86806 0.78413 0.80614 0.83659 1.20323 1.21263 1.18910 1.18170 0.91556 0.86123 0.89225 1.20536 0.99818 0.90566 1.12903 1.20745 0.91721 0.97756 0.93784 1.15729 0.92155 0.86665 1.18101 1.25822 0.93036 0.92795 0.92454 1.81197 1.08980 1.11376 1.11650 1.20863 0.99564 0.90187 0.93197 1.20822 0.92296 0.99054 1.09962 0.93232 0.90907 0.91529 0.90979 0.90680 0.95994 0.96891 0.92549 0.85354 0.85771 0.85440 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 10.18 59.85 0.61 1.58 16 2 N -0.62 -8.90 2.99 -179.60 -0.54 -9.44 16 3 C 0.13 2.15 5.09 -4.04 -0.02 2.13 16 4 C -0.03 -0.59 4.36 -27.88 -0.12 -0.71 16 5 C -0.53 -13.89 9.66 -34.44 -0.33 -14.22 16 6 H 0.07 2.07 7.99 -52.48 -0.42 1.66 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 9 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 13 C 0.26 3.59 6.55 -83.82 -0.55 3.04 16 14 C -0.22 -2.51 9.18 -39.45 -0.36 -2.87 16 15 C -0.02 -0.21 9.74 -39.21 -0.38 -0.59 16 16 C -0.12 -1.50 5.74 -106.80 -0.61 -2.11 16 17 C 0.27 3.73 15.33 -22.47 -0.34 3.39 16 18 N -0.46 -7.11 18.54 41.83 0.78 -6.34 16 19 C -0.02 -0.21 9.75 -39.21 -0.38 -0.59 16 20 C -0.20 -2.81 9.18 -39.44 -0.36 -3.17 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 23 H 0.07 0.64 6.17 -51.93 -0.32 0.32 16 24 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 25 H 0.07 1.27 6.17 -51.93 -0.32 0.95 16 26 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 27 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.13 1.23 6.11 -52.49 -0.32 0.91 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.14 2.10 6.11 -52.49 -0.32 1.78 16 LS Contribution 279.99 15.07 4.22 4.22 Total: -1.00 -29.94 279.99 -6.14 -36.08 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -3.74 Total: -2.77 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -2.96 Total: -12.21 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 1.01 Total: -41.60 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.94 -6.14 -36.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061952330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.924 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds