Wall clock time and date at job start Mon Mar 30 2020 03:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.52998 * 109.47058 * 270.00111 * 3 2 1 5 5 C 1.50703 * 109.47204 * 180.02562 * 4 3 2 6 6 H 1.08007 * 119.99587 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00252 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00312 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99888 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47135 * 90.00014 * 9 7 5 11 11 H 1.48499 * 109.47132 * 210.00033 * 9 7 5 12 12 H 1.48503 * 109.47074 * 329.99750 * 9 7 5 13 13 C 1.39185 * 119.99958 * 179.97438 * 2 1 3 14 14 C 1.39179 * 119.92515 * 0.02562 * 13 2 1 15 15 C 1.37650 * 120.07100 * 179.97438 * 14 13 2 16 16 C 1.39799 * 119.92913 * 0.02562 * 15 14 13 17 17 C 1.43205 * 120.07701 * 179.97438 * 16 15 14 18 18 N 6.73122 * 120.00063 * 180.02562 * 2 1 3 19 19 C 1.39813 * 119.84996 * 0.27424 * 16 15 14 20 20 C 1.37655 * 119.92146 * 359.44481 * 19 16 15 21 21 H 1.09003 * 109.46925 * 269.99849 * 1 2 3 22 22 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 23 23 H 1.09003 * 109.47307 * 149.99910 * 1 2 3 24 24 H 1.08996 * 109.47153 * 29.99982 * 3 2 1 25 25 H 1.09002 * 109.47094 * 150.00008 * 3 2 1 26 26 H 1.09005 * 109.46783 * 299.99924 * 4 3 2 27 27 H 1.09002 * 109.47252 * 59.99994 * 4 3 2 28 28 H 0.96994 * 119.99863 * 179.97438 * 8 7 5 29 29 H 1.07994 * 119.96165 * 359.95647 * 14 13 2 30 30 H 1.08008 * 120.03484 * 179.97438 * 15 14 13 31 31 H 1.08001 * 120.04125 * 179.72493 * 19 16 15 32 32 H 1.07991 * 119.96081 * 180.27907 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2064 3.0153 -1.4425 6 1 3.4764 3.4830 -0.5071 7 6 3.5507 3.6126 -2.6365 8 7 4.2083 4.7515 -2.6366 9 14 3.0831 2.8040 -4.2543 10 1 1.7468 3.2898 -4.6824 11 1 4.0903 3.1492 -5.2895 12 1 3.0407 1.3302 -4.0770 13 6 2.1609 -1.2054 0.0005 14 6 1.4634 -2.4098 0.0005 15 6 2.1486 -3.6036 0.0005 16 6 3.5466 -3.6055 0.0011 17 6 4.2627 -4.8456 0.0016 18 7 4.8307 -5.8294 -0.0026 19 6 4.2441 -2.3938 0.0074 20 6 3.5527 -1.2035 0.0016 21 1 -0.3633 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5139 24 1 1.6084 2.0284 0.5138 25 1 3.1499 1.1385 0.5138 26 1 3.0415 0.9508 -1.9563 27 1 1.5000 1.8408 -1.9563 28 1 4.4508 5.1714 -3.4766 29 1 0.3835 -2.4077 0.0008 30 1 1.6068 -4.5380 0.0010 31 1 5.3241 -2.3916 0.0124 32 1 4.0908 -0.2672 0.0019 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061952330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:42 Heat of formation + Delta-G solvation = 39.252895 kcal Electronic energy + Delta-G solvation = -14917.491803 eV Core-core repulsion = 12456.363166 eV Total energy + Delta-G solvation = -2461.128638 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.67681 -38.19705 -36.83298 -35.10474 -32.82100 -31.86891 -30.82874 -28.02222 -26.18101 -23.65808 -23.04562 -21.74247 -19.71022 -19.05764 -17.82882 -16.75291 -16.44052 -15.71346 -15.39936 -15.01602 -14.86762 -14.82287 -14.55525 -14.50608 -14.08530 -13.63496 -13.41216 -13.15013 -12.90529 -12.81577 -12.80570 -12.26842 -12.00164 -11.74159 -11.53830 -11.36656 -10.77108 -10.63212 -9.89361 -8.29465 -8.16749 -6.33066 0.13318 0.58162 1.34849 1.38678 1.48911 1.76408 2.10693 2.27033 2.35605 3.07334 3.09463 3.13585 3.94513 4.04504 4.23604 4.45811 4.48731 4.54907 4.64310 4.75999 4.83121 4.91032 5.01055 5.12786 5.23911 5.31474 5.41465 5.47685 5.57590 5.61596 5.86151 6.21655 6.39273 6.58100 6.64945 6.76156 7.32520 8.87102 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.006263 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.680826 B = 4469.806212 C = 4945.876932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.622 5.622 3 C 0.138 3.862 4 C -0.019 4.019 5 C -0.527 4.527 6 H 0.041 0.959 7 C 0.012 3.988 8 N -0.948 5.948 9 Si 0.943 3.057 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.252 1.252 13 C 0.243 3.757 14 C -0.205 4.205 15 C -0.008 4.008 16 C -0.124 4.124 17 C 0.292 3.708 18 N -0.491 5.491 19 C -0.016 4.016 20 C -0.219 4.219 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.015 0.985 27 H 0.017 0.983 28 H 0.266 0.734 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.137 0.863 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.201 -13.393 5.025 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.327 5.327 3 C 0.016 3.984 4 C -0.058 4.058 5 C -0.566 4.566 6 H 0.059 0.941 7 C -0.186 4.186 8 N -0.589 5.589 9 Si 0.768 3.232 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.176 1.176 13 C 0.135 3.865 14 C -0.228 4.228 15 C -0.030 4.030 16 C -0.130 4.130 17 C -0.021 4.021 18 N -0.168 5.168 19 C -0.037 4.037 20 C -0.242 4.242 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.107 0.893 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.174 0.826 30 H 0.171 0.829 31 H 0.155 0.845 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.399 -14.566 4.926 17.521 hybrid contribution 0.162 0.882 -0.847 1.234 sum -8.237 -13.684 4.079 16.484 Atomic orbital electron populations 1.21923 0.77846 1.03768 1.02508 1.46935 1.06489 1.03114 1.76168 1.21356 0.96546 0.83630 0.96913 1.19826 0.95872 0.94594 0.95483 1.21339 1.35694 1.06233 0.93333 0.94051 1.25869 0.94554 0.95080 1.03079 1.70046 1.41511 1.19244 1.28075 0.85761 0.78336 0.80167 0.78984 1.19178 1.21366 1.17564 1.18418 0.91552 0.86750 0.89791 1.20795 1.01123 0.89455 1.11410 1.21063 0.91055 0.98898 0.91936 1.15811 0.92896 0.85788 1.18508 1.25916 0.92230 0.92515 0.91399 1.81223 1.10007 1.12565 1.13038 1.20945 1.00185 0.89935 0.92658 1.20783 0.92921 0.98832 1.11621 0.91395 0.91502 0.89333 0.90686 0.91087 0.96619 0.96507 0.92530 0.82614 0.82854 0.84547 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.56 10.18 127.77 1.30 2.86 16 2 N -0.62 -16.63 2.99 -722.14 -2.16 -18.79 16 3 C 0.14 4.67 5.09 86.38 0.44 5.11 16 4 C -0.02 -0.82 4.36 29.85 0.13 -0.69 16 5 C -0.53 -28.37 9.66 25.60 0.25 -28.13 16 6 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 7 C 0.01 0.65 5.47 84.65 0.46 1.11 16 8 N -0.95 -57.56 13.96 21.45 0.30 -57.26 16 9 Si 0.94 43.02 27.47 68.60 1.88 44.90 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 13 C 0.24 6.18 6.55 38.43 0.25 6.43 16 14 C -0.21 -3.97 9.18 22.36 0.21 -3.76 16 15 C -0.01 -0.15 9.74 22.51 0.22 0.07 16 16 C -0.12 -2.77 5.74 -21.27 -0.12 -2.89 16 17 C 0.29 7.43 15.33 88.33 1.35 8.78 16 18 N -0.49 -14.66 18.54 19.00 0.35 -14.30 16 19 C -0.02 -0.38 9.75 22.51 0.22 -0.16 16 20 C -0.22 -5.97 9.18 22.36 0.21 -5.76 16 21 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.07 1.37 8.07 -2.39 -0.02 1.35 16 23 H 0.09 1.30 6.17 -2.39 -0.01 1.28 16 24 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 25 H 0.07 2.43 6.17 -2.39 -0.01 2.41 16 26 H 0.02 0.68 7.20 -2.38 -0.02 0.67 16 27 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 28 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.16 2.15 6.11 -2.91 -0.02 2.13 16 30 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 31 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.12 3.74 6.11 -2.91 -0.02 3.73 16 Total: -1.00 -65.02 279.99 6.35 -58.67 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.07 Total: 3.81 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 4.91 Total: -17.03 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -1.51 Total: -90.35 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Total: -65.02 6.35 -58.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061952330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.919 kcal (2) G-P(sol) polarization free energy of solvation -65.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds