Wall clock time and date at job start Mon Mar 30 2020 03:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46893 * 2 1 4 4 C 1.50698 * 109.47062 * 239.99762 * 2 1 3 5 5 H 1.07996 * 119.99793 * 239.99826 * 4 2 1 6 6 C 1.37874 * 119.99978 * 59.99858 * 4 2 1 7 7 N 1.31509 * 120.00113 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99807 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47256 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.46763 * 120.00284 * 8 6 4 11 11 H 1.48494 * 109.47550 * 240.00041 * 8 6 4 12 12 N 1.46496 * 109.47244 * 119.99571 * 2 1 3 13 13 C 1.46500 * 119.99875 * 64.76432 * 12 2 1 14 14 C 1.39190 * 120.00469 * 244.76575 * 12 2 1 15 15 C 1.39177 * 119.92989 * 174.45329 * 14 12 2 16 16 C 1.37648 * 120.07854 * 180.25348 * 15 14 12 17 17 C 1.39807 * 119.92027 * 359.47342 * 16 15 14 18 18 C 1.43201 * 120.07460 * 180.29774 * 17 16 15 19 19 N 7.57088 * 121.49550 * 65.24333 * 2 1 3 20 20 C 1.39808 * 119.85154 * 0.27895 * 17 16 15 21 21 C 1.37653 * 119.92615 * 359.97438 * 20 17 16 22 22 H 1.08997 * 109.46950 * 59.99955 * 1 2 3 23 23 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47039 * 300.00183 * 1 2 3 25 25 H 0.97003 * 120.00003 * 179.97438 * 7 6 4 26 26 H 1.09007 * 109.47169 * 270.00151 * 13 12 2 27 27 H 1.08996 * 109.47263 * 29.99649 * 13 12 2 28 28 H 1.09001 * 109.47455 * 150.00057 * 13 12 2 29 29 H 1.08008 * 119.95941 * 0.02562 * 15 14 12 30 30 H 1.08000 * 120.03888 * 179.74440 * 16 15 14 31 31 H 1.08006 * 120.03750 * 180.02562 * 20 17 16 32 32 H 1.07999 * 119.96577 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 3.1474 -2.2865 -3.6036 10 1 1.1677 -1.5868 -4.8164 11 1 3.1472 -0.1861 -4.8161 12 7 2.0184 -0.6905 1.1962 13 6 1.7526 -2.1198 1.3767 14 6 2.7349 0.0114 2.1613 15 6 3.0982 -0.6160 3.3493 16 6 3.8022 0.0768 4.3080 17 6 4.1619 1.4088 4.0825 18 6 4.8999 2.1307 5.0749 19 7 5.4853 2.7034 5.8622 20 6 3.7999 2.0344 2.8858 21 6 3.0913 1.3374 1.9335 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7095 1.1616 -3.4844 26 1 0.8101 -2.2498 1.9089 27 1 1.6890 -2.6035 0.4020 28 1 2.5606 -2.5697 1.9535 29 1 2.8241 -1.6466 3.5208 30 1 4.0802 -0.4095 5.2314 31 1 4.0765 3.0632 2.7083 32 1 2.8116 1.8199 1.0087 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061952426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:41 Heat of formation + Delta-G solvation = 59.419650 kcal Electronic energy + Delta-G solvation = -15209.516854 eV Core-core repulsion = 12749.262712 eV Total energy + Delta-G solvation = -2460.254142 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.32522 -36.85450 -35.53797 -33.13493 -30.91339 -30.27529 -28.83009 -25.87077 -25.37462 -22.86793 -21.73374 -19.96289 -18.44076 -16.63087 -16.40612 -15.37332 -14.60546 -14.31377 -13.94766 -13.50244 -13.41843 -13.30136 -13.24249 -12.55029 -12.26252 -11.88407 -11.75156 -11.62751 -11.43703 -11.17346 -10.97671 -10.80361 -10.61973 -10.29270 -10.10268 -9.49096 -8.95699 -8.68087 -8.58983 -6.66738 -6.21773 -4.32702 1.43994 1.81692 3.03266 3.16568 3.25833 3.28203 3.40382 3.88395 4.27405 4.36720 4.41843 5.06940 5.18969 5.22848 5.63524 5.75180 5.91942 5.98630 6.04132 6.25014 6.34887 6.48938 6.63119 6.67725 6.76597 6.83131 6.90655 7.11307 7.28358 7.52549 7.70153 7.88044 7.91273 8.11141 8.33504 8.72873 9.35072 10.80721 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037574 B = 0.006136 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.018515 B = 4562.500283 C = 4780.291176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.258 3.742 3 H 0.057 0.943 4 C -0.530 4.530 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.590 5.590 13 C 0.090 3.910 14 C 0.267 3.733 15 C -0.225 4.225 16 C -0.016 4.016 17 C -0.137 4.137 18 C 0.277 3.723 19 N -0.467 5.467 20 C -0.017 4.017 21 C -0.206 4.206 22 H 0.094 0.906 23 H 0.030 0.970 24 H 0.013 0.987 25 H 0.264 0.736 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -3.257 6.382 7.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.158 3.842 3 H 0.074 0.926 4 C -0.569 4.569 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.290 5.290 13 C -0.053 4.053 14 C 0.154 3.846 15 C -0.248 4.248 16 C -0.037 4.037 17 C -0.144 4.144 18 C -0.036 4.036 19 N -0.144 5.144 20 C -0.038 4.038 21 C -0.228 4.228 22 H 0.112 0.888 23 H 0.049 0.951 24 H 0.032 0.968 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.409 -2.407 7.227 7.746 hybrid contribution 0.007 -0.722 -1.260 1.452 sum 1.416 -3.129 5.967 6.885 Atomic orbital electron populations 1.22126 0.98067 0.99737 1.00877 1.19090 0.91112 0.93712 0.80307 0.92560 1.21361 1.31996 1.13396 0.90103 0.91925 1.24885 0.94727 0.94943 0.99062 1.69863 1.36141 1.22559 1.23963 0.86430 0.78669 0.79676 0.82608 1.19744 1.20884 1.20812 1.47425 1.53049 1.08246 1.20295 1.21591 0.99137 0.82019 1.02561 1.18273 0.87244 0.91220 0.87878 1.20506 1.08874 1.00938 0.94528 1.20682 0.93675 0.91688 0.97666 1.15646 1.10424 0.94382 0.93963 1.25889 0.92268 0.92757 0.92642 1.81170 1.12465 1.09686 1.11109 1.20787 0.93576 0.98683 0.90771 1.20846 1.06074 0.94213 1.01706 0.88785 0.95055 0.96787 0.92551 0.94116 0.90089 0.92621 0.85698 0.86203 0.85959 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.04 37.16 0.34 -2.90 16 2 C 0.26 5.70 2.57 -69.08 -0.18 5.52 16 3 H 0.06 1.33 5.28 -51.93 -0.27 1.05 16 4 C -0.53 -12.94 7.96 -34.44 -0.27 -13.21 16 5 H 0.06 1.54 7.00 -52.49 -0.37 1.17 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -22.97 11.32 55.43 0.63 -22.34 16 8 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.59 -11.05 2.88 -173.31 -0.50 -11.54 16 13 C 0.09 1.43 9.21 59.85 0.55 1.99 16 14 C 0.27 4.56 6.54 -83.82 -0.55 4.02 16 15 C -0.23 -3.24 9.14 -39.45 -0.36 -3.60 16 16 C -0.02 -0.21 9.75 -39.21 -0.38 -0.59 16 17 C -0.14 -1.97 5.74 -106.80 -0.61 -2.59 16 18 C 0.28 4.23 15.33 -22.47 -0.34 3.89 16 19 N -0.47 -7.91 18.54 41.84 0.78 -7.13 16 20 C -0.02 -0.24 9.75 -39.21 -0.38 -0.62 16 21 C -0.21 -3.45 9.29 -39.45 -0.37 -3.82 16 22 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 23 H 0.03 0.65 7.79 -51.93 -0.40 0.24 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 26 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.08 1.39 6.66 -51.93 -0.35 1.04 16 28 H 0.06 0.75 6.42 -51.93 -0.33 0.42 16 29 H 0.13 1.57 6.27 -52.48 -0.33 1.24 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.14 2.51 5.72 -52.49 -0.30 2.21 16 LS Contribution 275.13 15.07 4.15 4.15 Total: -1.00 -26.01 275.13 -6.12 -32.14 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -3.50 Total: 0.44 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.66 Total: -10.36 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.90 Total: -41.01 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.01 -6.12 -32.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061952426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.556 kcal (2) G-P(sol) polarization free energy of solvation -26.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds