Wall clock time and date at job start Mon Mar 30 2020 03:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46893 * 2 1 4 4 C 1.50698 * 109.47062 * 239.99762 * 2 1 3 5 5 H 1.07996 * 119.99793 * 239.99826 * 4 2 1 6 6 C 1.37874 * 119.99978 * 59.99858 * 4 2 1 7 7 N 1.31509 * 120.00113 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99807 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47256 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.46763 * 120.00284 * 8 6 4 11 11 H 1.48494 * 109.47550 * 240.00041 * 8 6 4 12 12 N 1.46496 * 109.47244 * 119.99571 * 2 1 3 13 13 C 1.46500 * 119.99875 * 64.76432 * 12 2 1 14 14 C 1.39190 * 120.00469 * 244.76575 * 12 2 1 15 15 C 1.39177 * 119.92989 * 174.45329 * 14 12 2 16 16 C 1.37648 * 120.07854 * 180.25348 * 15 14 12 17 17 C 1.39807 * 119.92027 * 359.47342 * 16 15 14 18 18 C 1.43201 * 120.07460 * 180.29774 * 17 16 15 19 19 N 7.57088 * 121.49550 * 65.24333 * 2 1 3 20 20 C 1.39808 * 119.85154 * 0.27895 * 17 16 15 21 21 C 1.37653 * 119.92615 * 359.97438 * 20 17 16 22 22 H 1.08997 * 109.46950 * 59.99955 * 1 2 3 23 23 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47039 * 300.00183 * 1 2 3 25 25 H 0.97003 * 120.00003 * 179.97438 * 7 6 4 26 26 H 1.09007 * 109.47169 * 270.00151 * 13 12 2 27 27 H 1.08996 * 109.47263 * 29.99649 * 13 12 2 28 28 H 1.09001 * 109.47455 * 150.00057 * 13 12 2 29 29 H 1.08008 * 119.95941 * 0.02562 * 15 14 12 30 30 H 1.08000 * 120.03888 * 179.74440 * 16 15 14 31 31 H 1.08006 * 120.03750 * 180.02562 * 20 17 16 32 32 H 1.07999 * 119.96577 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 3.1474 -2.2865 -3.6036 10 1 1.1677 -1.5868 -4.8164 11 1 3.1472 -0.1861 -4.8161 12 7 2.0184 -0.6905 1.1962 13 6 1.7526 -2.1198 1.3767 14 6 2.7349 0.0114 2.1613 15 6 3.0982 -0.6160 3.3493 16 6 3.8022 0.0768 4.3080 17 6 4.1619 1.4088 4.0825 18 6 4.8999 2.1307 5.0749 19 7 5.4853 2.7034 5.8622 20 6 3.7999 2.0344 2.8858 21 6 3.0913 1.3374 1.9335 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7095 1.1616 -3.4844 26 1 0.8101 -2.2498 1.9089 27 1 1.6890 -2.6035 0.4020 28 1 2.5606 -2.5697 1.9535 29 1 2.8241 -1.6466 3.5208 30 1 4.0802 -0.4095 5.2314 31 1 4.0765 3.0632 2.7083 32 1 2.8116 1.8199 1.0087 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061952426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:41 Heat of formation + Delta-G solvation = 47.164883 kcal Electronic energy + Delta-G solvation = -15210.048260 eV Core-core repulsion = 12749.262712 eV Total energy + Delta-G solvation = -2460.785548 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58551 -38.21816 -36.89650 -34.84778 -32.23109 -31.70168 -30.22857 -27.25015 -27.18072 -24.24258 -22.96882 -21.49680 -19.67178 -18.33603 -17.87638 -16.89559 -16.16200 -15.52578 -15.34064 -14.91341 -14.73983 -14.60981 -14.45878 -14.07277 -13.60182 -13.43951 -13.14129 -13.00098 -12.81505 -12.75745 -12.67124 -12.39126 -12.20503 -12.08482 -11.51365 -11.08848 -10.50698 -10.42659 -9.84023 -8.22315 -7.90689 -6.26770 0.22544 0.65054 1.42127 1.46420 1.55099 1.80550 2.16820 2.37697 2.60356 3.14785 3.17748 3.19427 4.03873 4.11806 4.42162 4.58723 4.71343 4.76919 4.78943 4.84091 4.98722 5.12044 5.15809 5.20429 5.32215 5.49217 5.53176 5.62511 5.70422 5.90205 5.98691 6.19414 6.49000 6.66238 6.89585 6.92125 7.44254 8.90590 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037574 B = 0.006136 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.018515 B = 4562.500283 C = 4780.291176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.263 3.737 3 H 0.035 0.965 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.284 1.284 12 N -0.605 5.605 13 C 0.090 3.910 14 C 0.246 3.754 15 C -0.215 4.215 16 C -0.004 4.004 17 C -0.133 4.133 18 C 0.296 3.704 19 N -0.494 5.494 20 C -0.011 4.011 21 C -0.225 4.225 22 H 0.067 0.933 23 H 0.034 0.966 24 H 0.024 0.976 25 H 0.264 0.736 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 -4.432 7.791 9.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.161 3.839 3 H 0.053 0.947 4 C -0.574 4.574 5 H 0.076 0.924 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.210 1.210 12 N -0.307 5.307 13 C -0.052 4.052 14 C 0.136 3.864 15 C -0.238 4.238 16 C -0.025 4.025 17 C -0.140 4.140 18 C -0.017 4.017 19 N -0.171 5.171 20 C -0.032 4.032 21 C -0.248 4.248 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.167 0.833 30 H 0.171 0.829 31 H 0.155 0.845 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.108 -3.588 8.670 9.617 hybrid contribution -0.159 -0.317 -1.601 1.640 sum 1.949 -3.905 7.069 8.307 Atomic orbital electron populations 1.21937 0.98032 0.99574 1.00031 1.18735 0.91083 0.92829 0.81278 0.94689 1.21636 1.31458 1.13098 0.91253 0.92419 1.25555 0.95098 0.95601 1.01518 1.69977 1.37253 1.23724 1.24293 0.85566 0.78074 0.78659 0.79664 1.19333 1.20687 1.21047 1.47217 1.54357 1.09230 1.19881 1.21685 1.00925 0.80449 1.02154 1.18555 0.87761 0.91419 0.88681 1.20727 1.07938 1.01925 0.93214 1.21011 0.92105 0.90967 0.98429 1.15720 1.10014 0.94910 0.93370 1.25855 0.91613 0.92078 0.92118 1.81204 1.13369 1.10478 1.12080 1.20889 0.92630 0.99316 0.90389 1.20760 1.07613 0.94811 1.01634 0.91425 0.94735 0.95701 0.92692 0.92752 0.91953 0.89920 0.83318 0.82920 0.84483 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 9.04 71.98 0.65 -5.36 16 2 C 0.26 11.79 2.57 44.25 0.11 11.90 16 3 H 0.04 1.73 5.28 -2.39 -0.01 1.72 16 4 C -0.54 -26.46 7.96 25.60 0.20 -26.26 16 5 H 0.06 2.84 7.00 -2.91 -0.02 2.82 16 6 C 0.02 1.13 5.30 84.65 0.45 1.58 16 7 N -0.91 -48.36 11.32 21.45 0.24 -48.11 16 8 Si 0.95 40.60 29.54 68.60 2.03 42.63 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.60 -22.20 2.88 -702.23 -2.02 -24.21 16 13 C 0.09 2.71 9.21 127.77 1.18 3.89 16 14 C 0.25 8.10 6.54 38.43 0.25 8.35 16 15 C -0.22 -5.47 9.14 22.36 0.20 -5.27 16 16 C 0.00 -0.09 9.75 22.51 0.22 0.13 16 17 C -0.13 -3.47 5.74 -21.27 -0.12 -3.59 16 18 C 0.30 8.26 15.33 88.33 1.35 9.62 16 19 N -0.49 -15.68 18.54 19.00 0.35 -15.33 16 20 C -0.01 -0.30 9.75 22.51 0.22 -0.08 16 21 C -0.23 -7.52 9.29 22.36 0.21 -7.31 16 22 H 0.07 3.33 6.07 -2.39 -0.01 3.32 16 23 H 0.03 1.43 7.79 -2.39 -0.02 1.41 16 24 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 26 H 0.05 1.45 8.14 -2.38 -0.02 1.44 16 27 H 0.06 2.08 6.66 -2.39 -0.02 2.06 16 28 H 0.08 1.98 6.42 -2.39 -0.02 1.96 16 29 H 0.15 3.07 6.27 -2.91 -0.02 3.05 16 30 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 32 H 0.12 4.41 5.72 -2.91 -0.02 4.40 16 Total: -1.00 -55.48 275.13 6.66 -48.82 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.13 Total: 8.62 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 4.93 Total: -12.41 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -1.42 Total: -87.66 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -55.48 6.66 -48.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061952426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.984 kcal (2) G-P(sol) polarization free energy of solvation -55.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds