Wall clock time and date at job start Mon Mar 30 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47306 * 2 1 4 4 C 1.50699 * 109.47288 * 120.00411 * 2 1 3 5 5 H 1.08001 * 120.00645 * 120.27656 * 4 2 1 6 6 C 1.37877 * 119.99642 * 299.99598 * 4 2 1 7 7 N 1.31516 * 120.00138 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00315 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46999 * 59.99887 * 8 6 4 10 10 H 1.48500 * 109.47298 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46742 * 300.00113 * 8 6 4 12 12 N 1.46507 * 109.47163 * 239.99951 * 2 1 3 13 13 C 1.46501 * 119.99925 * 295.24455 * 12 2 1 14 14 C 1.39699 * 120.00050 * 115.24480 * 12 2 1 15 15 C 1.39034 * 120.00290 * 5.77376 * 14 12 2 16 16 C 1.38204 * 120.23163 * 179.97438 * 15 14 12 17 17 C 1.38010 * 120.23409 * 0.02562 * 16 15 14 18 18 C 1.39638 * 120.00008 * 0.02562 * 17 16 15 19 19 C 1.43199 * 120.11843 * 179.97438 * 18 17 16 20 20 N 7.23030 * 114.12558 * 260.93916 * 2 1 3 21 21 C 1.38627 * 119.99819 * 185.50871 * 14 12 2 22 22 H 1.08997 * 109.46897 * 300.00158 * 1 2 3 23 23 H 1.08997 * 109.46636 * 60.00058 * 1 2 3 24 24 H 1.08996 * 109.47306 * 179.97438 * 1 2 3 25 25 H 0.96996 * 120.00068 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.47028 * 89.99289 * 13 12 2 27 27 H 1.08998 * 109.47333 * 209.99686 * 13 12 2 28 28 H 1.09004 * 109.47228 * 329.99838 * 13 12 2 29 29 H 1.08001 * 119.88151 * 0.02562 * 15 14 12 30 30 H 1.08001 * 119.88017 * 180.02562 * 16 15 14 31 31 H 1.08006 * 119.99790 * 179.97438 * 17 16 15 32 32 H 1.07996 * 120.11871 * 359.97250 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.8076 -1.1190 4.0077 10 1 1.8280 -0.4192 5.2205 11 1 1.8280 -2.5198 4.0082 12 7 2.0184 -0.6907 -1.1962 13 6 1.7524 -2.1200 -1.3767 14 6 2.7377 0.0137 -2.1647 15 6 3.0940 1.3386 -1.9394 16 6 3.8060 2.0398 -2.8941 17 6 4.1679 1.4299 -4.0780 18 6 3.8143 0.1000 -4.3150 19 6 4.1880 -0.5351 -5.5428 20 7 4.4853 -1.0392 -6.5164 21 6 3.1010 -0.6100 -3.3483 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7091 1.1614 3.4844 26 1 0.8100 -2.2498 -1.9088 27 1 2.5604 -2.5699 -1.9535 28 1 1.6888 -2.6037 -0.4019 29 1 2.8140 1.8213 -1.0147 30 1 4.0802 3.0686 -2.7129 31 1 4.7240 1.9816 -4.8216 32 1 2.8293 -1.6405 -3.5233 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061952530.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:42 Heat of formation + Delta-G solvation = 62.064244 kcal Electronic energy + Delta-G solvation = -15258.670809 eV Core-core repulsion = 12798.531345 eV Total energy + Delta-G solvation = -2460.139463 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.32202 -36.81867 -35.69699 -33.09177 -31.05254 -30.20050 -28.65418 -25.57523 -25.30634 -23.45623 -21.47997 -20.24311 -17.99558 -16.73659 -15.82362 -15.35690 -15.05975 -14.49139 -14.01260 -13.74377 -13.47799 -13.33785 -12.97112 -12.50822 -12.40670 -11.90194 -11.70376 -11.49793 -11.33866 -11.06133 -10.93475 -10.78177 -10.68548 -10.24551 -10.13619 -9.49204 -8.96892 -8.59503 -8.54418 -6.61062 -6.17119 -4.28014 1.18129 1.95106 2.82836 3.21240 3.26846 3.28130 3.30046 3.91181 4.21080 4.31159 4.33767 5.11113 5.22279 5.41368 5.64856 5.75733 5.84373 6.05551 6.09510 6.12891 6.40389 6.57821 6.64135 6.69022 6.78471 6.88694 6.96636 7.12328 7.32859 7.56869 7.64970 7.75872 7.98163 8.18916 8.42639 8.77827 9.39435 10.84897 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038680 B = 0.006287 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.708458 B = 4452.639159 C = 4617.910634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.264 3.736 3 H 0.054 0.946 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.603 5.603 13 C 0.095 3.905 14 C 0.235 3.765 15 C -0.170 4.170 16 C -0.073 4.073 17 C -0.154 4.154 18 C 0.008 3.992 19 C 0.270 3.730 20 N -0.443 5.443 21 C -0.173 4.173 22 H 0.092 0.908 23 H 0.012 0.988 24 H 0.030 0.970 25 H 0.265 0.735 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 0.696 -6.285 6.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.163 3.837 3 H 0.072 0.928 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.307 5.307 13 C -0.049 4.049 14 C 0.127 3.873 15 C -0.193 4.193 16 C -0.092 4.092 17 C -0.177 4.177 18 C 0.004 3.996 19 C -0.045 4.045 20 N -0.119 5.119 21 C -0.199 4.199 22 H 0.111 0.889 23 H 0.031 0.969 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.307 -0.105 -7.445 7.795 hybrid contribution 0.143 -0.341 1.309 1.360 sum 2.450 -0.446 -6.136 6.622 Atomic orbital electron populations 1.22127 0.98301 0.99666 1.00719 1.18976 0.90917 0.93485 0.80282 0.92843 1.21320 1.31780 1.13481 0.90201 0.92099 1.24882 0.94797 0.94943 0.98991 1.69847 1.36189 1.22554 1.24075 0.86555 0.79272 0.79688 0.81914 1.20177 1.21147 1.20220 1.47309 1.54936 1.07953 1.20510 1.21509 0.98795 0.82272 1.02311 1.17812 0.89976 0.91422 0.88095 1.21196 1.02907 0.93892 1.01295 1.20747 0.96577 0.99320 0.92592 1.20669 1.04958 0.93171 0.98903 1.15656 1.02136 0.93744 0.88086 1.25961 0.92860 0.92789 0.92895 1.81178 1.09854 1.09182 1.11671 1.20527 1.05569 1.00283 0.93487 0.88903 0.96872 0.95124 0.92514 0.94485 0.93053 0.90250 0.84478 0.85729 0.86352 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.04 37.16 0.34 -2.97 16 2 C 0.26 5.93 2.58 -69.08 -0.18 5.75 16 3 H 0.05 1.27 5.30 -51.93 -0.28 1.00 16 4 C -0.53 -13.12 7.95 -34.44 -0.27 -13.40 16 5 H 0.06 1.52 7.01 -52.49 -0.37 1.15 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.18 11.32 55.43 0.63 -22.55 16 8 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.60 -11.67 2.89 -173.36 -0.50 -12.17 16 13 C 0.09 1.60 9.23 59.85 0.55 2.15 16 14 C 0.24 4.13 6.53 -83.83 -0.55 3.59 16 15 C -0.17 -2.82 9.31 -39.30 -0.37 -3.19 16 16 C -0.07 -1.00 10.02 -39.68 -0.40 -1.40 16 17 C -0.15 -2.03 9.75 -39.14 -0.38 -2.41 16 18 C 0.01 0.11 5.73 -106.96 -0.61 -0.50 16 19 C 0.27 4.03 15.33 -22.47 -0.34 3.69 16 20 N -0.44 -7.26 18.54 41.84 0.78 -6.48 16 21 C -0.17 -2.68 8.87 -38.95 -0.35 -3.02 16 22 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.03 0.65 7.79 -51.93 -0.40 0.24 16 25 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.75 6.44 -51.93 -0.33 0.42 16 28 H 0.08 1.43 6.67 -51.93 -0.35 1.08 16 29 H 0.14 2.45 5.73 -52.49 -0.30 2.15 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.12 1.79 6.29 -52.49 -0.33 1.46 16 LS Contribution 275.25 15.07 4.15 4.15 Total: -1.00 -25.96 275.25 -6.13 -32.09 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -3.50 Total: 0.23 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.65 Total: -10.12 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.90 Total: -41.20 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -25.96 -6.13 -32.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061952530.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.150 kcal (2) G-P(sol) polarization free energy of solvation -25.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds