Wall clock time and date at job start Mon Mar 30 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47143 * 2 1 4 4 C 1.50698 * 109.47046 * 240.00086 * 2 1 3 5 5 H 1.08005 * 120.00212 * 240.00084 * 4 2 1 6 6 C 1.37872 * 120.00445 * 60.00146 * 4 2 1 7 7 N 1.31524 * 119.99467 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00520 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47235 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47228 * 119.99880 * 8 6 4 11 11 H 1.48505 * 109.47238 * 240.00071 * 8 6 4 12 12 N 1.46504 * 109.47213 * 120.00060 * 2 1 3 13 13 C 1.46507 * 119.99799 * 64.75582 * 12 2 1 14 14 C 1.39698 * 120.00252 * 244.75786 * 12 2 1 15 15 C 1.39035 * 119.99833 * 354.21704 * 14 12 2 16 16 C 1.38208 * 120.23014 * 179.72585 * 15 14 12 17 17 C 1.38007 * 120.23479 * 0.25581 * 16 15 14 18 18 C 1.39642 * 119.99653 * 0.02562 * 17 16 15 19 19 C 1.43199 * 120.11385 * 180.02562 * 18 17 16 20 20 N 7.23029 * 114.10921 * 99.05298 * 2 1 3 21 21 C 1.38627 * 120.00307 * 174.45517 * 14 12 2 22 22 H 1.09005 * 109.47210 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47200 * 299.99926 * 1 2 3 24 24 H 1.08997 * 109.47117 * 60.00189 * 1 2 3 25 25 H 0.97004 * 119.99525 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46758 * 270.00140 * 13 12 2 27 27 H 1.09005 * 109.47041 * 30.00084 * 13 12 2 28 28 H 1.09001 * 109.46725 * 150.00197 * 13 12 2 29 29 H 1.08001 * 119.88620 * 0.02562 * 15 14 12 30 30 H 1.07999 * 119.88232 * 180.27812 * 16 15 14 31 31 H 1.08000 * 120.00446 * 179.97438 * 17 16 15 32 32 H 1.07996 * 120.11723 * 0.03755 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2863 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1857 -4.8160 12 7 2.0184 -0.6906 1.1962 13 6 1.7524 -2.1200 1.3766 14 6 2.7376 0.0137 2.1648 15 6 3.0940 1.3386 1.9393 16 6 3.8007 2.0416 2.8966 17 6 4.1621 1.4320 4.0808 18 6 3.8143 0.1000 4.3148 19 6 4.1875 -0.5348 5.5429 20 7 4.4834 -1.0384 6.5174 21 6 3.1003 -0.6097 3.3486 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7081 1.1609 -3.4844 26 1 0.8100 -2.2498 1.9089 27 1 1.6887 -2.6036 0.4018 28 1 2.5604 -2.5699 1.9535 29 1 2.8135 1.8215 1.0149 30 1 4.0707 3.0719 2.7174 31 1 4.7146 1.9848 4.8261 32 1 2.8284 -1.6401 3.5239 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061952531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:44 Heat of formation + Delta-G solvation = 61.972274 kcal Electronic energy + Delta-G solvation = -15258.802124 eV Core-core repulsion = 12798.658673 eV Total energy + Delta-G solvation = -2460.143452 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.32276 -36.81842 -35.69682 -33.09351 -31.05310 -30.20122 -28.65480 -25.57579 -25.31031 -23.45688 -21.48137 -20.24467 -17.99683 -16.74064 -15.82508 -15.36177 -15.06043 -14.48680 -14.01379 -13.74323 -13.48080 -13.33301 -12.97222 -12.51465 -12.40789 -11.90354 -11.71018 -11.49825 -11.34070 -11.06739 -10.94861 -10.78338 -10.65360 -10.25684 -10.12788 -9.49094 -8.95633 -8.59548 -8.55308 -6.61190 -6.17629 -4.28338 1.18078 1.95054 2.82758 3.18602 3.27602 3.28922 3.31087 3.91199 4.21006 4.30993 4.33658 5.10795 5.22219 5.41352 5.64785 5.75695 5.84329 6.05488 6.09445 6.12822 6.40304 6.57706 6.64038 6.68952 6.78345 6.88530 6.96587 7.12270 7.32678 7.56789 7.64952 7.76031 7.97889 8.18778 8.42451 8.78146 9.39262 10.84411 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038691 B = 0.006287 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.515905 B = 4452.849592 C = 4618.523083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.263 3.737 3 H 0.054 0.946 4 C -0.528 4.528 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.603 5.603 13 C 0.095 3.905 14 C 0.235 3.765 15 C -0.170 4.170 16 C -0.073 4.073 17 C -0.154 4.154 18 C 0.008 3.992 19 C 0.270 3.730 20 N -0.443 5.443 21 C -0.172 4.172 22 H 0.030 0.970 23 H 0.012 0.988 24 H 0.092 0.908 25 H 0.264 0.736 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 0.682 6.311 6.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.163 3.837 3 H 0.072 0.928 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.307 5.307 13 C -0.049 4.049 14 C 0.127 3.873 15 C -0.193 4.193 16 C -0.092 4.092 17 C -0.177 4.177 18 C 0.004 3.996 19 C -0.045 4.045 20 N -0.119 5.119 21 C -0.199 4.199 22 H 0.049 0.951 23 H 0.031 0.969 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.319 -0.126 7.477 7.829 hybrid contribution 0.127 -0.322 -1.319 1.364 sum 2.447 -0.448 6.158 6.641 Atomic orbital electron populations 1.22129 0.98298 0.99671 1.00727 1.18985 0.90921 0.93508 0.80318 0.92826 1.21397 1.31757 1.13287 0.90176 0.91987 1.24889 0.94801 0.94973 0.99026 1.69875 1.36258 1.22680 1.23852 0.86443 0.78653 0.79679 0.82676 1.19780 1.20925 1.20850 1.47308 1.54930 1.07954 1.20512 1.21513 0.98796 0.82270 1.02310 1.17811 0.89975 0.91431 0.88087 1.21198 1.02943 0.93875 1.01279 1.20747 0.96614 0.99315 0.92558 1.20668 1.05018 0.93107 0.98907 1.15655 1.02143 0.93722 0.88098 1.25966 0.92863 0.92789 0.92891 1.81182 1.09864 1.09183 1.11656 1.20526 1.05519 1.00307 0.93507 0.95124 0.96861 0.88901 0.92636 0.94483 0.90251 0.93051 0.84480 0.85730 0.86351 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.04 37.16 0.34 -2.97 16 2 C 0.26 5.91 2.58 -69.08 -0.18 5.73 16 3 H 0.05 1.28 5.30 -51.93 -0.28 1.00 16 4 C -0.53 -13.08 7.96 -34.44 -0.27 -13.35 16 5 H 0.06 1.55 7.00 -52.48 -0.37 1.19 16 6 C 0.07 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -23.17 11.32 55.43 0.63 -22.55 16 8 Si 0.90 19.89 29.54 -169.99 -5.02 14.86 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.60 -11.67 2.89 -173.36 -0.50 -12.17 16 13 C 0.09 1.60 9.23 59.85 0.55 2.15 16 14 C 0.24 4.13 6.53 -83.83 -0.55 3.59 16 15 C -0.17 -2.82 9.31 -39.30 -0.37 -3.19 16 16 C -0.07 -1.00 10.02 -39.68 -0.40 -1.40 16 17 C -0.15 -2.03 9.75 -39.14 -0.38 -2.41 16 18 C 0.01 0.11 5.73 -106.96 -0.61 -0.50 16 19 C 0.27 4.03 15.33 -22.47 -0.34 3.68 16 20 N -0.44 -7.25 18.54 41.84 0.78 -6.48 16 21 C -0.17 -2.68 8.87 -38.95 -0.35 -3.02 16 22 H 0.03 0.65 7.79 -51.93 -0.40 0.24 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 25 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.43 6.66 -51.93 -0.35 1.08 16 28 H 0.05 0.75 6.44 -51.93 -0.33 0.42 16 29 H 0.14 2.45 5.73 -52.49 -0.30 2.15 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.12 1.79 6.29 -52.49 -0.33 1.46 16 LS Contribution 275.25 15.07 4.15 4.15 Total: -1.00 -26.01 275.25 -6.12 -32.14 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -3.50 Total: 0.16 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.65 Total: -10.12 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.90 Total: -41.19 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.01 -6.12 -32.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061952531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.111 kcal (2) G-P(sol) polarization free energy of solvation -26.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds