Wall clock time and date at job start Mon Mar 30 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47143 * 2 1 4 4 C 1.50698 * 109.47046 * 240.00086 * 2 1 3 5 5 H 1.08005 * 120.00212 * 240.00084 * 4 2 1 6 6 C 1.37872 * 120.00445 * 60.00146 * 4 2 1 7 7 N 1.31524 * 119.99467 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00520 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47235 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47228 * 119.99880 * 8 6 4 11 11 H 1.48505 * 109.47238 * 240.00071 * 8 6 4 12 12 N 1.46504 * 109.47213 * 120.00060 * 2 1 3 13 13 C 1.46507 * 119.99799 * 64.75582 * 12 2 1 14 14 C 1.39698 * 120.00252 * 244.75786 * 12 2 1 15 15 C 1.39035 * 119.99833 * 354.21704 * 14 12 2 16 16 C 1.38208 * 120.23014 * 179.72585 * 15 14 12 17 17 C 1.38007 * 120.23479 * 0.25581 * 16 15 14 18 18 C 1.39642 * 119.99653 * 0.02562 * 17 16 15 19 19 C 1.43199 * 120.11385 * 180.02562 * 18 17 16 20 20 N 7.23029 * 114.10921 * 99.05298 * 2 1 3 21 21 C 1.38627 * 120.00307 * 174.45517 * 14 12 2 22 22 H 1.09005 * 109.47210 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47200 * 299.99926 * 1 2 3 24 24 H 1.08997 * 109.47117 * 60.00189 * 1 2 3 25 25 H 0.97004 * 119.99525 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46758 * 270.00140 * 13 12 2 27 27 H 1.09005 * 109.47041 * 30.00084 * 13 12 2 28 28 H 1.09001 * 109.46725 * 150.00197 * 13 12 2 29 29 H 1.08001 * 119.88620 * 0.02562 * 15 14 12 30 30 H 1.07999 * 119.88232 * 180.27812 * 16 15 14 31 31 H 1.08000 * 120.00446 * 179.97438 * 17 16 15 32 32 H 1.07996 * 120.11723 * 0.03755 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2863 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1857 -4.8160 12 7 2.0184 -0.6906 1.1962 13 6 1.7524 -2.1200 1.3766 14 6 2.7376 0.0137 2.1648 15 6 3.0940 1.3386 1.9393 16 6 3.8007 2.0416 2.8966 17 6 4.1621 1.4320 4.0808 18 6 3.8143 0.1000 4.3148 19 6 4.1875 -0.5348 5.5429 20 7 4.4834 -1.0384 6.5174 21 6 3.1003 -0.6097 3.3486 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7081 1.1609 -3.4844 26 1 0.8100 -2.2498 1.9089 27 1 1.6887 -2.6036 0.4018 28 1 2.5604 -2.5699 1.9535 29 1 2.8135 1.8215 1.0149 30 1 4.0707 3.0719 2.7174 31 1 4.7146 1.9848 4.8261 32 1 2.8284 -1.6401 3.5239 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061952531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:44 Heat of formation + Delta-G solvation = 49.729950 kcal Electronic energy + Delta-G solvation = -15259.332991 eV Core-core repulsion = 12798.658673 eV Total energy + Delta-G solvation = -2460.674319 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.58990 -38.18244 -37.03974 -34.83431 -32.31615 -31.75002 -30.04367 -27.23622 -26.94463 -24.71703 -22.87787 -21.68596 -19.32906 -18.48954 -17.20772 -16.96184 -16.36619 -16.00486 -15.38495 -14.98957 -14.83688 -14.70107 -14.35678 -14.01431 -13.69639 -13.44643 -13.16497 -12.98122 -12.82644 -12.69930 -12.60164 -12.31975 -12.15014 -12.04481 -11.67080 -11.09044 -10.51313 -10.43557 -9.78549 -8.21013 -7.87697 -6.24861 -0.02529 0.77744 1.42135 1.46296 1.55141 1.63407 2.08289 2.38984 2.61712 2.99469 3.12057 3.17714 4.07933 4.28498 4.42102 4.46000 4.67198 4.76845 4.78388 4.85193 4.98996 5.05751 5.09770 5.17896 5.39774 5.48230 5.53033 5.65566 5.75465 5.90862 6.00669 6.21863 6.45985 6.53983 6.92678 6.97454 7.46202 8.91955 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038691 B = 0.006287 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.515905 B = 4452.849592 C = 4618.523083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.269 3.731 3 H 0.037 0.963 4 C -0.535 4.535 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.619 5.619 13 C 0.097 3.903 14 C 0.211 3.789 15 C -0.186 4.186 16 C -0.064 4.064 17 C -0.135 4.135 18 C 0.007 3.993 19 C 0.288 3.712 20 N -0.466 5.466 21 C -0.167 4.167 22 H 0.030 0.970 23 H 0.023 0.977 24 H 0.068 0.932 25 H 0.264 0.736 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 0.825 7.488 8.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.167 3.833 3 H 0.054 0.946 4 C -0.574 4.574 5 H 0.072 0.928 6 C -0.177 4.177 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.326 5.326 13 C -0.046 4.046 14 C 0.105 3.895 15 C -0.209 4.209 16 C -0.083 4.083 17 C -0.158 4.158 18 C 0.003 3.997 19 C -0.027 4.027 20 N -0.142 5.142 21 C -0.193 4.193 22 H 0.049 0.951 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.173 0.827 31 H 0.168 0.832 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.342 0.016 8.690 9.310 hybrid contribution -0.128 -0.303 -1.583 1.617 sum 3.215 -0.287 7.107 7.805 Atomic orbital electron populations 1.21949 0.98340 0.99356 0.99965 1.18647 0.90828 0.92735 0.81117 0.94577 1.21651 1.31341 1.12997 0.91402 0.92750 1.25542 0.95138 0.95631 1.01414 1.69981 1.37224 1.23738 1.24248 0.85579 0.78063 0.78640 0.79743 1.19623 1.20730 1.20797 1.47088 1.56435 1.08717 1.20310 1.21546 1.00179 0.81148 1.01762 1.18001 0.90975 0.91950 0.88583 1.21242 1.04123 0.94038 1.01515 1.21037 0.95083 1.00480 0.91694 1.21040 1.03291 0.92478 0.98946 1.15694 1.02163 0.94268 0.87623 1.25862 0.92136 0.92154 0.92507 1.81216 1.10733 1.09840 1.12443 1.20569 1.05117 1.00771 0.92852 0.95098 0.95745 0.91366 0.92691 0.93429 0.92022 0.90984 0.86524 0.82685 0.83210 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.17 9.04 71.98 0.65 -5.52 16 2 C 0.27 12.31 2.58 44.24 0.11 12.42 16 3 H 0.04 1.79 5.30 -2.39 -0.01 1.77 16 4 C -0.54 -26.95 7.96 25.60 0.20 -26.75 16 5 H 0.05 2.76 7.00 -2.91 -0.02 2.74 16 6 C 0.02 1.16 5.30 84.65 0.45 1.61 16 7 N -0.91 -48.48 11.32 21.45 0.24 -48.24 16 8 Si 0.95 41.06 29.54 68.60 2.03 43.09 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 12 N -0.62 -23.92 2.89 -702.38 -2.03 -25.95 16 13 C 0.10 3.21 9.23 127.77 1.18 4.38 16 14 C 0.21 7.22 6.53 38.17 0.25 7.47 16 15 C -0.19 -6.02 9.31 22.45 0.21 -5.82 16 16 C -0.06 -1.57 10.02 22.21 0.22 -1.35 16 17 C -0.13 -3.04 9.75 22.55 0.22 -2.82 16 18 C 0.01 0.17 5.73 -21.38 -0.12 0.05 16 19 C 0.29 7.80 15.33 88.33 1.35 9.16 16 20 N -0.47 -14.20 18.54 19.00 0.35 -13.85 16 21 C -0.17 -4.86 8.87 22.68 0.20 -4.66 16 22 H 0.03 1.33 7.79 -2.38 -0.02 1.31 16 23 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 3.40 6.07 -2.39 -0.01 3.39 16 25 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 2.23 6.66 -2.38 -0.02 2.21 16 28 H 0.07 2.03 6.44 -2.39 -0.02 2.01 16 29 H 0.12 4.26 5.73 -2.91 -0.02 4.25 16 30 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.13 3.56 6.29 -2.91 -0.02 3.54 16 Total: -1.00 -55.30 275.25 6.65 -48.65 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.13 Total: 8.12 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 4.93 Total: -11.83 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -1.43 Total: -88.03 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -55.30 6.65 -48.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061952531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.380 kcal (2) G-P(sol) polarization free energy of solvation -55.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds