Wall clock time and date at job start Mon Mar 30 2020 03:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00366 * 2 1 4 4 H 1.48501 * 109.46848 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47022 * 120.00194 * 3 2 1 6 6 H 1.48495 * 109.47327 * 240.00572 * 3 2 1 7 7 C 1.37885 * 119.99419 * 180.28246 * 2 1 3 8 8 H 1.08003 * 119.99504 * 186.42022 * 7 2 1 9 9 C 1.50700 * 120.00192 * 6.41745 * 7 2 1 10 10 H 1.09000 * 109.46911 * 26.06162 * 9 7 2 11 11 C 1.53000 * 109.46768 * 266.06198 * 9 7 2 12 12 C 1.52994 * 109.47312 * 299.99741 * 11 9 7 13 13 C 1.52994 * 109.47495 * 300.00403 * 12 11 9 14 14 C 1.53004 * 109.47112 * 59.99866 * 13 12 11 15 15 C 1.52994 * 109.46995 * 146.06434 * 9 7 2 16 16 H 1.09002 * 109.47159 * 180.02562 * 15 9 7 17 17 C 1.50710 * 109.47139 * 299.99968 * 15 9 7 18 18 C 1.38230 * 119.99962 * 70.88497 * 17 15 9 19 19 C 1.38234 * 119.99807 * 179.79292 * 18 17 15 20 20 C 1.38229 * 120.00185 * 0.43535 * 19 18 17 21 21 C 1.38243 * 119.99922 * 359.81591 * 20 19 18 22 22 C 1.38234 * 119.99956 * 359.97438 * 21 20 19 23 23 H 0.96998 * 120.00434 * 175.34406 * 1 2 3 24 24 H 1.08999 * 109.47376 * 60.00427 * 11 9 7 25 25 H 1.09002 * 109.46462 * 180.02562 * 11 9 7 26 26 H 1.09002 * 109.47134 * 60.00685 * 12 11 9 27 27 H 1.08999 * 109.47020 * 180.02562 * 12 11 9 28 28 H 1.09000 * 109.47514 * 180.02562 * 13 12 11 29 29 H 1.09002 * 109.47159 * 300.00266 * 13 12 11 30 30 H 1.09002 * 109.46781 * 60.00169 * 14 13 12 31 31 H 1.08999 * 109.47084 * 180.02562 * 14 13 12 32 32 H 1.07997 * 119.99961 * 359.97438 * 18 17 15 33 33 H 1.08008 * 119.99944 * 180.27595 * 19 18 17 34 34 H 1.08001 * 120.00376 * 179.83945 * 20 19 18 35 35 H 1.07997 * 120.00194 * 179.97438 * 21 20 19 36 36 H 1.07993 * 119.99845 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1031 1.6962 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1942 -0.0059 8 1 3.0794 -1.1976 0.0987 9 6 1.2580 -2.4944 -0.1582 10 1 0.3248 -2.3171 -0.6927 11 6 0.9516 -3.0715 1.2253 12 6 2.2615 -3.3204 1.9756 13 6 3.1200 -4.3121 1.1880 14 6 3.4264 -3.7349 -0.1955 15 6 2.1164 -3.4861 -0.9458 16 1 1.5763 -4.4264 -1.0563 17 6 2.4183 -2.9175 -2.3085 18 6 3.2873 -1.8500 -2.4349 19 6 3.5675 -1.3313 -3.6853 20 6 2.9718 -1.8743 -4.8082 21 6 2.0986 -2.9386 -4.6812 22 6 1.8218 -3.4601 -3.4313 23 1 -0.4851 -0.8372 -0.0682 24 1 0.3400 -2.3651 1.7864 25 1 0.4120 -4.0122 1.1151 26 1 2.8014 -2.3800 2.0858 27 1 2.0432 -3.7320 2.9610 28 1 4.0530 -4.4898 1.7228 29 1 2.5800 -5.2526 1.0778 30 1 3.9664 -2.7945 -0.0853 31 1 4.0376 -4.4416 -0.7567 32 1 3.7496 -1.4232 -1.5572 33 1 4.2500 -0.5001 -3.7845 34 1 3.1886 -1.4674 -5.7848 35 1 1.6328 -3.3626 -5.5585 36 1 1.1394 -4.2912 -3.3321 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062568423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:58 Heat of formation + Delta-G solvation = -4.801195 kcal Electronic energy + Delta-G solvation = -16540.701683 eV Core-core repulsion = 14181.203060 eV Total energy + Delta-G solvation = -2359.498623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21764 -37.13933 -32.79372 -31.86004 -30.23225 -29.31234 -27.84426 -24.60709 -22.48054 -21.97891 -21.23021 -20.08476 -18.84921 -16.48409 -15.65012 -15.00620 -14.48801 -14.00240 -13.80769 -13.42586 -13.17281 -12.92138 -12.58327 -12.33709 -11.87589 -11.55950 -11.26577 -10.91156 -10.80731 -10.74374 -10.56765 -10.29005 -10.10413 -9.90623 -9.80173 -9.24380 -9.05339 -8.37198 -8.20771 -8.11989 -7.79803 -6.28167 -3.94469 2.09689 2.16459 3.43523 3.45809 3.62664 4.53735 4.55852 5.36203 5.44361 5.51638 5.62032 5.64420 5.65443 5.77937 5.96148 6.12972 6.23301 6.30541 6.35842 6.42835 6.44397 6.48378 6.57286 6.63441 6.73057 6.82093 6.94442 6.97507 7.10907 7.20969 7.25225 7.29751 7.41061 7.59672 7.60321 7.80785 8.31648 8.48535 8.94768 9.73486 11.10759 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.014030 C = 0.009442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.069853 B = 1995.210377 C = 2964.869512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.023 3.977 3 Si 1.053 2.947 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.573 4.573 8 H 0.054 0.946 9 C 0.037 3.963 10 H 0.033 0.967 11 C -0.104 4.104 12 C -0.106 4.106 13 C -0.111 4.111 14 C -0.102 4.102 15 C -0.039 4.039 16 H 0.046 0.954 17 C -0.042 4.042 18 C -0.079 4.079 19 C -0.134 4.134 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.131 4.131 23 H 0.270 0.730 24 H 0.051 0.949 25 H 0.022 0.978 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.134 0.866 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.864 -6.011 -3.512 9.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.182 4.182 3 Si 0.882 3.118 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.611 4.611 8 H 0.072 0.928 9 C 0.018 3.982 10 H 0.051 0.949 11 C -0.142 4.142 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.139 4.139 15 C -0.057 4.057 16 H 0.065 0.935 17 C -0.042 4.042 18 C -0.096 4.096 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.149 4.149 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.657 -4.354 -3.446 7.927 hybrid contribution 0.040 -1.564 -0.136 1.570 sum 5.697 -5.917 -3.582 8.961 Atomic orbital electron populations 1.70783 1.06924 1.31042 1.46301 1.25611 0.96492 1.02128 0.93926 0.83766 0.75240 0.76294 0.76496 1.20980 1.21581 1.21286 1.21806 0.94385 0.91196 1.53732 0.92840 1.18895 0.95234 0.93494 0.90589 0.94865 1.21612 0.95588 0.97509 0.99540 1.21378 0.97464 0.99214 0.96268 1.21454 0.98708 0.98232 0.96455 1.21517 0.97108 1.00530 0.94786 1.20213 0.96673 0.97503 0.91360 0.93526 1.19865 0.94722 0.95097 0.94523 1.21344 0.97011 0.94376 0.96906 1.21119 1.00809 1.00096 0.93162 1.20913 0.99070 0.97757 0.97966 1.20883 0.99664 0.97878 0.96858 1.20987 1.00646 1.00689 0.92609 0.91852 0.93065 0.95923 0.90954 0.94678 0.93469 0.93478 0.90906 0.94163 0.84792 0.87147 0.87409 0.87363 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.91 13.62 55.43 0.76 -26.16 16 2 C 0.02 0.62 5.45 -17.82 -0.10 0.52 16 3 Si 1.05 24.63 29.91 -169.99 -5.08 19.54 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.57 -14.47 4.47 -34.44 -0.15 -14.62 16 8 H 0.05 1.33 4.80 -52.48 -0.25 1.08 16 9 C 0.04 0.86 1.94 -91.77 -0.18 0.68 16 10 H 0.03 0.88 6.51 -51.93 -0.34 0.54 16 11 C -0.10 -2.27 5.44 -26.73 -0.15 -2.41 16 12 C -0.11 -2.04 5.70 -26.74 -0.15 -2.20 16 13 C -0.11 -1.91 5.92 -26.73 -0.16 -2.07 16 14 C -0.10 -1.88 4.66 -26.73 -0.12 -2.01 16 15 C -0.04 -0.79 2.24 -91.77 -0.21 -1.00 16 16 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 17 C -0.04 -0.86 4.74 -104.62 -0.50 -1.35 16 18 C -0.08 -1.61 7.86 -39.59 -0.31 -1.92 16 19 C -0.13 -2.47 10.05 -39.59 -0.40 -2.87 16 20 C -0.14 -2.37 10.05 -39.58 -0.40 -2.77 16 21 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 22 C -0.13 -2.45 9.67 -39.58 -0.38 -2.83 16 23 H 0.27 7.95 6.60 -40.82 -0.27 7.68 16 24 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 1.52 7.19 -51.93 -0.37 1.15 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.43 5.27 -51.93 -0.27 1.16 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.13 2.85 4.90 -52.49 -0.26 2.59 16 33 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.84 7.98 -52.49 -0.42 1.42 16 LS Contribution 277.29 15.07 4.18 4.18 Total: -1.00 -27.91 277.29 -8.94 -36.86 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.19 Total: 3.13 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: -3.60 Total: -37.55 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.76 Total: -26.16 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.08 Total: 19.54 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.91 -8.94 -36.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062568423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.054 kcal (2) G-P(sol) polarization free energy of solvation -27.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds