Wall clock time and date at job start Mon Mar 30 2020 03:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00366 * 2 1 4 4 H 1.48501 * 109.46848 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47022 * 120.00194 * 3 2 1 6 6 H 1.48495 * 109.47327 * 240.00572 * 3 2 1 7 7 C 1.37885 * 119.99419 * 180.28246 * 2 1 3 8 8 H 1.08003 * 119.99504 * 186.42022 * 7 2 1 9 9 C 1.50700 * 120.00192 * 6.41745 * 7 2 1 10 10 H 1.09000 * 109.46911 * 26.06162 * 9 7 2 11 11 C 1.53000 * 109.46768 * 266.06198 * 9 7 2 12 12 C 1.52994 * 109.47312 * 299.99741 * 11 9 7 13 13 C 1.52994 * 109.47495 * 300.00403 * 12 11 9 14 14 C 1.53004 * 109.47112 * 59.99866 * 13 12 11 15 15 C 1.52994 * 109.46995 * 146.06434 * 9 7 2 16 16 H 1.09002 * 109.47159 * 180.02562 * 15 9 7 17 17 C 1.50710 * 109.47139 * 299.99968 * 15 9 7 18 18 C 1.38230 * 119.99962 * 70.88497 * 17 15 9 19 19 C 1.38234 * 119.99807 * 179.79292 * 18 17 15 20 20 C 1.38229 * 120.00185 * 0.43535 * 19 18 17 21 21 C 1.38243 * 119.99922 * 359.81591 * 20 19 18 22 22 C 1.38234 * 119.99956 * 359.97438 * 21 20 19 23 23 H 0.96998 * 120.00434 * 175.34406 * 1 2 3 24 24 H 1.08999 * 109.47376 * 60.00427 * 11 9 7 25 25 H 1.09002 * 109.46462 * 180.02562 * 11 9 7 26 26 H 1.09002 * 109.47134 * 60.00685 * 12 11 9 27 27 H 1.08999 * 109.47020 * 180.02562 * 12 11 9 28 28 H 1.09000 * 109.47514 * 180.02562 * 13 12 11 29 29 H 1.09002 * 109.47159 * 300.00266 * 13 12 11 30 30 H 1.09002 * 109.46781 * 60.00169 * 14 13 12 31 31 H 1.08999 * 109.47084 * 180.02562 * 14 13 12 32 32 H 1.07997 * 119.99961 * 359.97438 * 18 17 15 33 33 H 1.08008 * 119.99944 * 180.27595 * 19 18 17 34 34 H 1.08001 * 120.00376 * 179.83945 * 20 19 18 35 35 H 1.07997 * 120.00194 * 179.97438 * 21 20 19 36 36 H 1.07993 * 119.99845 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1031 1.6962 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1942 -0.0059 8 1 3.0794 -1.1976 0.0987 9 6 1.2580 -2.4944 -0.1582 10 1 0.3248 -2.3171 -0.6927 11 6 0.9516 -3.0715 1.2253 12 6 2.2615 -3.3204 1.9756 13 6 3.1200 -4.3121 1.1880 14 6 3.4264 -3.7349 -0.1955 15 6 2.1164 -3.4861 -0.9458 16 1 1.5763 -4.4264 -1.0563 17 6 2.4183 -2.9175 -2.3085 18 6 3.2873 -1.8500 -2.4349 19 6 3.5675 -1.3313 -3.6853 20 6 2.9718 -1.8743 -4.8082 21 6 2.0986 -2.9386 -4.6812 22 6 1.8218 -3.4601 -3.4313 23 1 -0.4851 -0.8372 -0.0682 24 1 0.3400 -2.3651 1.7864 25 1 0.4120 -4.0122 1.1151 26 1 2.8014 -2.3800 2.0858 27 1 2.0432 -3.7320 2.9610 28 1 4.0530 -4.4898 1.7228 29 1 2.5800 -5.2526 1.0778 30 1 3.9664 -2.7945 -0.0853 31 1 4.0376 -4.4416 -0.7567 32 1 3.7496 -1.4232 -1.5572 33 1 4.2500 -0.5001 -3.7845 34 1 3.1886 -1.4674 -5.7848 35 1 1.6328 -3.3626 -5.5585 36 1 1.1394 -4.2912 -3.3321 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062568423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:57 Heat of formation + Delta-G solvation = -17.494743 kcal Electronic energy + Delta-G solvation = -16541.252117 eV Core-core repulsion = 14181.203060 eV Total energy + Delta-G solvation = -2360.049057 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76520 -38.67717 -34.74080 -33.37464 -31.66269 -31.03200 -29.38050 -26.58672 -24.03254 -23.46552 -22.86717 -21.59635 -20.59006 -18.15410 -17.30336 -16.63855 -15.97677 -15.65286 -15.50753 -14.99234 -14.80621 -14.61756 -14.01866 -13.84779 -13.52379 -13.11529 -12.81897 -12.67243 -12.54277 -12.45736 -12.05592 -12.01053 -11.81353 -11.47826 -11.41466 -10.89304 -10.74090 -10.33925 -10.11742 -9.62732 -9.28803 -8.42800 -6.06364 0.65706 0.72921 1.52283 1.59555 1.75174 2.62800 3.08149 3.37104 3.93378 4.06051 4.14040 4.22027 4.28295 4.40625 4.47412 4.59559 4.72301 4.76776 4.83659 4.89465 4.92642 4.94688 5.00023 5.10451 5.23608 5.31362 5.37168 5.43751 5.53978 5.60767 5.65747 5.71237 5.79028 5.86816 6.06583 6.31740 6.35227 6.40198 6.83743 7.67696 8.96762 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.014030 C = 0.009442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.069853 B = 1995.210377 C = 2964.869512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.033 4.033 3 Si 1.089 2.911 4 H -0.296 1.296 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.034 3.966 10 H -0.008 1.008 11 C -0.102 4.102 12 C -0.102 4.102 13 C -0.106 4.106 14 C -0.098 4.098 15 C -0.035 4.035 16 H 0.054 0.946 17 C -0.067 4.067 18 C -0.102 4.102 19 C -0.144 4.144 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.145 4.145 23 H 0.254 0.746 24 H 0.018 0.982 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.555 -7.132 -4.539 11.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.230 4.230 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.075 0.925 9 C 0.015 3.985 10 H 0.011 0.989 11 C -0.140 4.140 12 C -0.139 4.139 13 C -0.143 4.143 14 C -0.135 4.135 15 C -0.053 4.053 16 H 0.073 0.927 17 C -0.067 4.067 18 C -0.120 4.120 19 C -0.162 4.162 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.163 4.163 23 H 0.065 0.935 24 H 0.037 0.963 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.136 0.864 33 H 0.146 0.854 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.377 -5.495 -4.470 10.227 hybrid contribution -0.481 -1.286 0.109 1.377 sum 6.896 -6.780 -4.362 10.609 Atomic orbital electron populations 1.70899 1.08107 1.30115 1.50211 1.26751 0.96486 1.05546 0.94209 0.83292 0.74518 0.72939 0.77872 1.22261 1.19713 1.19456 1.22025 0.94465 0.91729 1.50540 0.92482 1.18871 0.93878 0.94145 0.91629 0.98950 1.21519 0.96908 0.97193 0.98360 1.21322 0.95972 0.99138 0.97482 1.21439 0.99618 0.97845 0.95393 1.21470 0.96000 1.00381 0.95650 1.20123 0.97096 0.96643 0.91474 0.92736 1.20000 0.95738 0.95918 0.95055 1.21321 0.98022 0.95282 0.97412 1.21415 1.01241 1.00596 0.92951 1.21335 0.98017 0.97215 0.98990 1.21309 0.99022 0.97434 0.97328 1.21266 1.00765 1.01324 0.92959 0.93473 0.96324 0.94347 0.93165 0.92469 0.90852 0.91914 0.92532 0.92154 0.86444 0.85388 0.84027 0.84098 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.60 13.62 21.45 0.29 -58.31 16 2 C -0.03 -1.84 5.45 84.66 0.46 -1.38 16 3 Si 1.09 50.25 29.91 68.60 2.05 52.30 16 4 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.55 -28.31 4.47 25.60 0.11 -28.19 16 8 H 0.06 2.87 4.80 -2.91 -0.01 2.86 16 9 C 0.03 1.61 1.94 -11.54 -0.02 1.59 16 10 H -0.01 -0.43 6.51 -2.39 -0.02 -0.45 16 11 C -0.10 -4.47 5.44 30.59 0.17 -4.31 16 12 C -0.10 -3.80 5.70 30.59 0.17 -3.63 16 13 C -0.11 -3.35 5.92 30.59 0.18 -3.16 16 14 C -0.10 -3.44 4.66 30.60 0.14 -3.29 16 15 C -0.03 -1.39 2.24 -11.54 -0.03 -1.42 16 16 H 0.05 2.06 7.92 -2.39 -0.02 2.05 16 17 C -0.07 -2.70 4.74 -19.86 -0.09 -2.79 16 18 C -0.10 -4.15 7.86 22.27 0.18 -3.97 16 19 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 20 C -0.14 -4.29 10.05 22.27 0.22 -4.06 16 21 C -0.13 -4.18 10.05 22.27 0.22 -3.95 16 22 C -0.15 -5.21 9.67 22.27 0.22 -4.99 16 23 H 0.25 15.92 6.60 -92.71 -0.61 15.31 16 24 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 2.08 7.19 -2.39 -0.02 2.07 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.06 2.17 5.27 -2.39 -0.01 2.16 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.12 5.02 4.90 -2.91 -0.01 5.01 16 33 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 34 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.12 3.92 7.98 -2.91 -0.02 3.89 16 Total: -1.00 -61.89 277.29 5.71 -56.18 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 1.21 Total: 18.26 kcal Atomic # 6 Polarization: -70.59 SS G_CDS: 2.16 Total: -68.43 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.29 Total: -58.31 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.30 kcal Total: -61.89 5.71 -56.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062568423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.685 kcal (2) G-P(sol) polarization free energy of solvation -61.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds