Wall clock time and date at job start Mon Mar 30 2020 03:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99751 * 2 1 4 4 C 1.50692 * 109.47168 * 180.02562 * 3 2 1 5 5 C 1.37824 * 120.17544 * 259.98048 * 4 3 2 6 6 C 1.38704 * 120.36786 * 180.02562 * 5 4 3 7 7 C 1.37935 * 120.64528 * 359.97438 * 6 5 4 8 8 C 1.38920 * 119.92263 * 359.97438 * 7 6 5 9 9 C 1.39475 * 120.17519 * 79.99927 * 4 3 2 10 10 C 1.46669 * 133.97419 * 359.97438 * 9 4 3 11 11 C 1.34299 * 107.05437 * 179.97438 * 10 9 4 12 12 N 1.37001 * 109.93808 * 359.97438 * 11 10 9 13 13 C 1.37207 * 125.08877 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00082 * 158.91838 * 13 12 11 15 15 C 1.38851 * 119.99885 * 338.91151 * 13 12 11 16 16 N 1.31438 * 120.00242 * 349.16939 * 15 13 12 17 17 Si 1.86801 * 119.99927 * 169.17198 * 15 13 12 18 18 H 1.48496 * 109.47305 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47461 * 120.00481 * 17 15 13 20 20 H 1.48507 * 109.46884 * 240.00134 * 17 15 13 21 21 H 1.09008 * 109.46975 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47017 * 299.99505 * 1 2 3 23 23 H 1.08994 * 109.47612 * 59.99784 * 1 2 3 24 24 H 1.00893 * 111.00407 * 123.95495 * 2 1 3 25 25 H 1.08998 * 109.46739 * 60.00076 * 3 2 1 26 26 H 1.09002 * 109.47343 * 300.00953 * 3 2 1 27 27 H 1.08001 * 119.81186 * 0.03651 * 5 4 3 28 28 H 1.08006 * 119.67623 * 180.27823 * 6 5 4 29 29 H 1.08002 * 120.04226 * 179.97438 * 7 6 5 30 30 H 1.08007 * 126.47275 * 359.97438 * 10 9 4 31 31 H 1.08002 * 125.02861 * 179.97438 * 11 10 9 32 32 H 0.97006 * 120.00147 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5018 1.3313 -0.0006 5 6 4.2003 1.5199 1.1724 6 6 5.5869 1.4843 1.1763 7 6 6.2878 1.2597 0.0097 8 6 5.6033 1.0661 -1.1836 9 6 4.1965 1.1036 -1.1884 10 6 3.7890 0.8690 -2.5777 11 6 4.9125 0.7133 -3.2968 12 7 6.0082 0.8293 -2.4826 13 6 7.3124 0.7236 -2.8955 14 1 8.1042 1.1507 -2.2981 15 6 7.6141 0.0673 -4.0813 16 7 6.6890 -0.6332 -4.6986 17 14 9.3349 0.1801 -4.7995 18 1 10.1840 1.0233 -3.9202 19 1 9.9208 -1.1809 -4.8970 20 1 9.2676 0.7881 -6.1527 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8307 -0.5261 0.7813 25 1 1.6459 1.8947 0.8900 26 1 1.6458 1.8949 -0.8899 27 1 3.6650 1.6962 2.0937 28 1 6.1229 1.6291 2.1027 29 1 7.3674 1.2344 0.0239 30 1 2.7765 0.8291 -2.9517 31 1 4.9470 0.5246 -4.3596 32 1 6.8999 -1.0920 -5.5269 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070634787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:59 Heat of formation + Delta-G solvation = 56.501190 kcal Electronic energy + Delta-G solvation = -15424.630559 eV Core-core repulsion = 12964.249863 eV Total energy + Delta-G solvation = -2460.380696 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97119 -36.79607 -35.06946 -33.09400 -31.17379 -29.21068 -27.79278 -25.81609 -24.79363 -23.07851 -20.76200 -20.52161 -19.54255 -17.25394 -15.72250 -15.35848 -15.09485 -14.54534 -14.31602 -14.22308 -13.62506 -13.24709 -13.01706 -12.28051 -11.89662 -11.76693 -11.66100 -11.53301 -11.32767 -11.17335 -10.82353 -10.59394 -10.46986 -10.26028 -9.72932 -9.17901 -8.44241 -8.09453 -7.04063 -6.81042 -6.48071 -4.24104 2.16126 2.69167 3.03017 3.05489 3.10869 3.84187 4.14059 4.55923 4.91230 4.92582 5.16075 5.43127 5.49508 5.65128 5.71417 5.93742 6.00453 6.01931 6.12612 6.37066 6.50353 6.61474 6.96815 7.10317 7.15867 7.19441 7.26080 7.32963 7.49294 7.62962 7.70484 7.76627 8.06269 8.26750 8.52263 9.07044 9.50176 10.33317 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037207 B = 0.007265 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.357661 B = 3852.906544 C = 4466.471694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.684 5.684 3 C 0.111 3.889 4 C -0.056 4.056 5 C -0.167 4.167 6 C -0.141 4.141 7 C -0.106 4.106 8 C 0.050 3.950 9 C -0.092 4.092 10 C -0.268 4.268 11 C 0.083 3.917 12 N -0.293 5.293 13 C -0.339 4.339 14 H 0.104 0.896 15 C 0.041 3.959 16 N -0.853 5.853 17 Si 0.939 3.061 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.274 1.274 21 H 0.063 0.937 22 H 0.014 0.986 23 H 0.062 0.938 24 H 0.340 0.660 25 H 0.025 0.975 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.169 0.831 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.084 2.198 5.592 7.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.314 5.314 3 C -0.017 4.017 4 C -0.057 4.057 5 C -0.187 4.187 6 C -0.161 4.161 7 C -0.126 4.126 8 C -0.062 4.062 9 C -0.099 4.099 10 C -0.292 4.292 11 C -0.052 4.052 12 N 0.044 4.956 13 C -0.467 4.467 14 H 0.122 0.878 15 C -0.167 4.167 16 N -0.485 5.485 17 Si 0.763 3.237 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.199 1.199 21 H 0.082 0.918 22 H 0.032 0.968 23 H 0.081 0.919 24 H 0.158 0.842 25 H 0.043 0.957 26 H 0.093 0.907 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.186 0.814 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.711 1.956 4.548 6.834 hybrid contribution 0.640 0.095 0.500 0.817 sum -4.071 2.051 5.048 6.801 Atomic orbital electron populations 1.22179 0.88658 1.01335 0.99857 1.60355 1.06455 1.14437 1.50136 1.20724 0.92094 0.89071 0.99799 1.18874 0.92979 1.01745 0.92097 1.20346 0.93975 1.08340 0.96075 1.20344 0.93816 1.05600 0.96321 1.19872 0.98294 1.03847 0.90589 1.18378 0.93359 1.08253 0.86190 1.18728 0.91587 1.06176 0.93360 1.21221 0.96894 1.19572 0.91559 1.22103 0.84391 1.01225 0.97439 1.40210 1.05481 1.46877 1.03065 1.19853 0.82505 1.36739 1.07575 0.87811 1.25482 1.00590 0.93776 0.96841 1.69913 1.34249 1.27003 1.17369 0.85681 0.80326 0.78561 0.79097 1.18873 1.20119 1.19947 0.91835 0.96765 0.91914 0.84243 0.95694 0.90741 0.88241 0.87671 0.87771 0.85954 0.81417 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.70 60.07 0.64 1.01 16 2 N -0.68 -10.91 6.84 -122.42 -0.84 -11.74 16 3 C 0.11 1.88 5.73 -4.98 -0.03 1.85 16 4 C -0.06 -1.14 5.42 -104.32 -0.57 -1.70 16 5 C -0.17 -3.15 9.66 -39.56 -0.38 -3.53 16 6 C -0.14 -2.74 10.02 -39.52 -0.40 -3.13 16 7 C -0.11 -2.36 9.95 -39.44 -0.39 -2.75 16 8 C 0.05 1.26 6.75 -83.84 -0.57 0.69 16 9 C -0.09 -2.19 6.16 -105.09 -0.65 -2.84 16 10 C -0.27 -6.47 10.95 -37.57 -0.41 -6.88 16 11 C 0.08 2.15 9.89 -16.63 -0.16 1.99 16 12 N -0.29 -7.89 2.92 -59.74 -0.17 -8.07 16 13 C -0.34 -9.03 9.93 -14.92 -0.15 -9.18 16 14 H 0.10 2.64 7.85 -52.49 -0.41 2.23 16 15 C 0.04 1.04 5.35 -17.49 -0.09 0.94 16 16 N -0.85 -22.42 10.85 55.49 0.60 -21.82 16 17 Si 0.94 19.27 29.57 -169.99 -5.03 14.24 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 22 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.34 5.17 8.81 -39.30 -0.35 4.82 16 25 H 0.02 0.37 8.01 -51.93 -0.42 -0.04 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.10 1.58 8.03 -52.49 -0.42 1.16 16 28 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 29 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.12 2.69 8.06 -52.48 -0.42 2.27 16 31 H 0.17 4.39 6.34 -52.49 -0.33 4.05 16 32 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 276.08 15.07 4.16 4.16 Total: -1.00 -28.39 276.08 -8.45 -36.84 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -4.02 Total: 9.91 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -3.15 Total: -23.53 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.41 Total: -41.63 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.39 -8.45 -36.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070634787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.343 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds