Wall clock time and date at job start Mon Mar 30 2020 03:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99751 * 2 1 4 4 C 1.50692 * 109.47168 * 180.02562 * 3 2 1 5 5 C 1.37824 * 120.17544 * 259.98048 * 4 3 2 6 6 C 1.38704 * 120.36786 * 180.02562 * 5 4 3 7 7 C 1.37935 * 120.64528 * 359.97438 * 6 5 4 8 8 C 1.38920 * 119.92263 * 359.97438 * 7 6 5 9 9 C 1.39475 * 120.17519 * 79.99927 * 4 3 2 10 10 C 1.46669 * 133.97419 * 359.97438 * 9 4 3 11 11 C 1.34299 * 107.05437 * 179.97438 * 10 9 4 12 12 N 1.37001 * 109.93808 * 359.97438 * 11 10 9 13 13 C 1.37207 * 125.08877 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00082 * 158.91838 * 13 12 11 15 15 C 1.38851 * 119.99885 * 338.91151 * 13 12 11 16 16 N 1.31438 * 120.00242 * 349.16939 * 15 13 12 17 17 Si 1.86801 * 119.99927 * 169.17198 * 15 13 12 18 18 H 1.48496 * 109.47305 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47461 * 120.00481 * 17 15 13 20 20 H 1.48507 * 109.46884 * 240.00134 * 17 15 13 21 21 H 1.09008 * 109.46975 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47017 * 299.99505 * 1 2 3 23 23 H 1.08994 * 109.47612 * 59.99784 * 1 2 3 24 24 H 1.00893 * 111.00407 * 123.95495 * 2 1 3 25 25 H 1.08998 * 109.46739 * 60.00076 * 3 2 1 26 26 H 1.09002 * 109.47343 * 300.00953 * 3 2 1 27 27 H 1.08001 * 119.81186 * 0.03651 * 5 4 3 28 28 H 1.08006 * 119.67623 * 180.27823 * 6 5 4 29 29 H 1.08002 * 120.04226 * 179.97438 * 7 6 5 30 30 H 1.08007 * 126.47275 * 359.97438 * 10 9 4 31 31 H 1.08002 * 125.02861 * 179.97438 * 11 10 9 32 32 H 0.97006 * 120.00147 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5018 1.3313 -0.0006 5 6 4.2003 1.5199 1.1724 6 6 5.5869 1.4843 1.1763 7 6 6.2878 1.2597 0.0097 8 6 5.6033 1.0661 -1.1836 9 6 4.1965 1.1036 -1.1884 10 6 3.7890 0.8690 -2.5777 11 6 4.9125 0.7133 -3.2968 12 7 6.0082 0.8293 -2.4826 13 6 7.3124 0.7236 -2.8955 14 1 8.1042 1.1507 -2.2981 15 6 7.6141 0.0673 -4.0813 16 7 6.6890 -0.6332 -4.6986 17 14 9.3349 0.1801 -4.7995 18 1 10.1840 1.0233 -3.9202 19 1 9.9208 -1.1809 -4.8970 20 1 9.2676 0.7881 -6.1527 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8307 -0.5261 0.7813 25 1 1.6459 1.8947 0.8900 26 1 1.6458 1.8949 -0.8899 27 1 3.6650 1.6962 2.0937 28 1 6.1229 1.6291 2.1027 29 1 7.3674 1.2344 0.0239 30 1 2.7765 0.8291 -2.9517 31 1 4.9470 0.5246 -4.3596 32 1 6.8999 -1.0920 -5.5269 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070634787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:59 Heat of formation + Delta-G solvation = 39.820616 kcal Electronic energy + Delta-G solvation = -15425.353883 eV Core-core repulsion = 12964.249863 eV Total energy + Delta-G solvation = -2461.104020 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.76043 -38.35587 -36.44425 -34.97297 -32.82649 -30.92851 -29.50545 -27.15059 -26.70519 -24.33713 -22.44339 -22.22580 -21.40039 -18.99208 -17.55019 -16.91173 -16.68445 -16.08945 -15.93132 -15.53024 -15.09046 -14.97444 -14.49914 -13.98466 -13.56921 -13.40487 -13.03802 -12.97397 -12.79431 -12.72937 -12.56783 -12.19042 -12.09403 -11.95800 -11.35190 -11.03509 -10.20163 -9.25396 -8.81794 -8.68594 -8.31585 -6.21828 0.47916 1.02520 1.35616 1.41046 1.52179 2.11615 2.26612 2.92538 3.09844 3.23666 3.68613 4.03094 4.25750 4.41088 4.46541 4.60117 4.67083 4.70326 4.76051 4.80833 4.93863 5.07834 5.09832 5.33060 5.41284 5.41772 5.51336 5.80933 5.84987 5.97215 6.15548 6.38156 6.49573 6.55929 6.59763 7.17962 7.59775 8.45264 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037207 B = 0.007265 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.357661 B = 3852.906544 C = 4466.471694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.705 5.705 3 C 0.117 3.883 4 C -0.057 4.057 5 C -0.159 4.159 6 C -0.122 4.122 7 C -0.136 4.136 8 C 0.016 3.984 9 C -0.115 4.115 10 C -0.266 4.266 11 C 0.052 3.948 12 N -0.316 5.316 13 C -0.373 4.373 14 H 0.103 0.897 15 C -0.002 4.002 16 N -0.886 5.886 17 Si 1.013 2.987 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.267 1.267 21 H 0.074 0.926 22 H 0.033 0.967 23 H 0.060 0.940 24 H 0.344 0.656 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.155 0.845 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.570 2.645 7.720 9.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.336 5.336 3 C -0.011 4.011 4 C -0.058 4.058 5 C -0.179 4.179 6 C -0.141 4.141 7 C -0.157 4.157 8 C -0.095 4.095 9 C -0.121 4.121 10 C -0.291 4.291 11 C -0.082 4.082 12 N 0.020 4.980 13 C -0.500 4.500 14 H 0.121 0.879 15 C -0.206 4.206 16 N -0.519 5.519 17 Si 0.833 3.167 18 H -0.181 1.181 19 H -0.195 1.195 20 H -0.191 1.191 21 H 0.093 0.907 22 H 0.052 0.948 23 H 0.079 0.921 24 H 0.162 0.838 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.123 0.877 30 H 0.154 0.846 31 H 0.172 0.828 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.222 2.408 6.697 8.827 hybrid contribution 0.664 -0.026 0.020 0.665 sum -4.558 2.382 6.717 8.459 Atomic orbital electron populations 1.22217 0.86497 1.02421 1.00643 1.60288 1.08609 1.13938 1.50796 1.20655 0.89675 0.89991 1.00774 1.19335 0.95117 1.00114 0.91244 1.20861 0.93923 1.06048 0.97109 1.20861 0.94473 1.02217 0.96552 1.20144 0.98770 1.05848 0.90891 1.19009 0.94725 1.09167 0.86570 1.19064 0.91454 1.07325 0.94264 1.21405 0.96868 1.18727 0.92120 1.22072 0.85328 1.03466 0.97293 1.40387 1.05549 1.48195 1.03916 1.20178 0.82915 1.38061 1.08801 0.87890 1.26510 1.04843 0.92749 0.96533 1.70018 1.36369 1.27656 1.17859 0.84603 0.75044 0.78729 0.78294 1.18102 1.19510 1.19146 0.90682 0.94835 0.92127 0.83828 0.92823 0.91581 0.83945 0.83701 0.87684 0.84579 0.82782 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.70 127.69 1.37 2.06 16 2 N -0.71 -20.77 6.84 -541.23 -3.70 -24.48 16 3 C 0.12 3.63 5.73 85.55 0.49 4.12 16 4 C -0.06 -2.20 5.42 -19.67 -0.11 -2.31 16 5 C -0.16 -5.39 9.66 22.28 0.22 -5.17 16 6 C -0.12 -4.35 10.02 22.31 0.22 -4.12 16 7 C -0.14 -6.05 9.95 22.36 0.22 -5.82 16 8 C 0.02 0.82 6.75 38.92 0.26 1.08 16 9 C -0.11 -5.51 6.16 -20.17 -0.12 -5.63 16 10 C -0.27 -13.27 10.95 23.57 0.26 -13.01 16 11 C 0.05 2.86 9.89 82.99 0.82 3.68 16 12 N -0.32 -17.81 2.92 -342.90 -1.00 -18.81 16 13 C -0.37 -20.70 9.93 84.00 0.83 -19.87 16 14 H 0.10 5.48 7.85 -2.91 -0.02 5.46 16 15 C 0.00 -0.11 5.35 84.90 0.45 0.34 16 16 N -0.89 -48.43 10.85 21.65 0.23 -48.19 16 17 Si 1.01 40.17 29.57 68.60 2.03 42.20 16 18 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 19 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 21 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 22 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.34 9.51 8.81 -89.70 -0.79 8.72 16 25 H 0.05 1.36 8.01 -2.39 -0.02 1.34 16 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.14 3.65 8.03 -2.91 -0.02 3.62 16 28 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 30 H 0.14 6.13 8.06 -2.91 -0.02 6.11 16 31 H 0.15 8.64 6.34 -2.91 -0.02 8.62 16 32 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -63.68 276.08 2.80 -60.88 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.33 Total: 33.05 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 4.92 Total: -44.65 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -4.47 Total: -91.48 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -63.68 2.80 -60.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070634787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.697 kcal (2) G-P(sol) polarization free energy of solvation -63.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds