Wall clock time and date at job start Mon Mar 30 2020 03:07:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.46902 * 110.99751 * 2 1
4 4 C 1.50692 * 109.47168 * 180.02562 * 3 2 1
5 5 C 1.37824 * 120.17544 * 259.98048 * 4 3 2
6 6 C 1.38704 * 120.36786 * 180.02562 * 5 4 3
7 7 C 1.37935 * 120.64528 * 359.97438 * 6 5 4
8 8 C 1.38920 * 119.92263 * 359.97438 * 7 6 5
9 9 C 1.39475 * 120.17519 * 79.99927 * 4 3 2
10 10 C 1.46669 * 133.97419 * 359.97438 * 9 4 3
11 11 C 1.34299 * 107.05437 * 179.97438 * 10 9 4
12 12 N 1.37001 * 109.93808 * 359.97438 * 11 10 9
13 13 C 1.37207 * 125.08877 * 180.02562 * 12 11 10
14 14 H 1.08000 * 120.00082 * 158.91838 * 13 12 11
15 15 C 1.38851 * 119.99885 * 338.91151 * 13 12 11
16 16 N 1.31438 * 120.00242 * 349.16939 * 15 13 12
17 17 Si 1.86801 * 119.99927 * 169.17198 * 15 13 12
18 18 H 1.48496 * 109.47305 * 359.97438 * 17 15 13
19 19 H 1.48496 * 109.47461 * 120.00481 * 17 15 13
20 20 H 1.48507 * 109.46884 * 240.00134 * 17 15 13
21 21 H 1.09008 * 109.46975 * 180.02562 * 1 2 3
22 22 H 1.08998 * 109.47017 * 299.99505 * 1 2 3
23 23 H 1.08994 * 109.47612 * 59.99784 * 1 2 3
24 24 H 1.00893 * 111.00407 * 123.95495 * 2 1 3
25 25 H 1.08998 * 109.46739 * 60.00076 * 3 2 1
26 26 H 1.09002 * 109.47343 * 300.00953 * 3 2 1
27 27 H 1.08001 * 119.81186 * 0.03651 * 5 4 3
28 28 H 1.08006 * 119.67623 * 180.27823 * 6 5 4
29 29 H 1.08002 * 120.04226 * 179.97438 * 7 6 5
30 30 H 1.08007 * 126.47275 * 359.97438 * 10 9 4
31 31 H 1.08002 * 125.02861 * 179.97438 * 11 10 9
32 32 H 0.97006 * 120.00147 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 3.5018 1.3313 -0.0006
5 6 4.2003 1.5199 1.1724
6 6 5.5869 1.4843 1.1763
7 6 6.2878 1.2597 0.0097
8 6 5.6033 1.0661 -1.1836
9 6 4.1965 1.1036 -1.1884
10 6 3.7890 0.8690 -2.5777
11 6 4.9125 0.7133 -3.2968
12 7 6.0082 0.8293 -2.4826
13 6 7.3124 0.7236 -2.8955
14 1 8.1042 1.1507 -2.2981
15 6 7.6141 0.0673 -4.0813
16 7 6.6890 -0.6332 -4.6986
17 14 9.3349 0.1801 -4.7995
18 1 10.1840 1.0233 -3.9202
19 1 9.9208 -1.1809 -4.8970
20 1 9.2676 0.7881 -6.1527
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3633 0.5137 0.8900
23 1 -0.3634 0.5138 -0.8899
24 1 1.8307 -0.5261 0.7813
25 1 1.6459 1.8947 0.8900
26 1 1.6458 1.8949 -0.8899
27 1 3.6650 1.6962 2.0937
28 1 6.1229 1.6291 2.1027
29 1 7.3674 1.2344 0.0239
30 1 2.7765 0.8291 -2.9517
31 1 4.9470 0.5246 -4.3596
32 1 6.8999 -1.0920 -5.5269
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000070634787.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:07:59
Heat of formation + Delta-G solvation = 39.820616 kcal
Electronic energy + Delta-G solvation = -15425.353883 eV
Core-core repulsion = 12964.249863 eV
Total energy + Delta-G solvation = -2461.104020 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.76043 -38.35587 -36.44425 -34.97297 -32.82649 -30.92851 -29.50545 -27.15059
-26.70519 -24.33713 -22.44339 -22.22580 -21.40039 -18.99208 -17.55019 -16.91173
-16.68445 -16.08945 -15.93132 -15.53024 -15.09046 -14.97444 -14.49914 -13.98466
-13.56921 -13.40487 -13.03802 -12.97397 -12.79431 -12.72937 -12.56783 -12.19042
-12.09403 -11.95800 -11.35190 -11.03509 -10.20163 -9.25396 -8.81794 -8.68594
-8.31585 -6.21828 0.47916 1.02520 1.35616 1.41046 1.52179 2.11615
2.26612 2.92538 3.09844 3.23666 3.68613 4.03094 4.25750 4.41088
4.46541 4.60117 4.67083 4.70326 4.76051 4.80833 4.93863 5.07834
5.09832 5.33060 5.41284 5.41772 5.51336 5.80933 5.84987 5.97215
6.15548 6.38156 6.49573 6.55929 6.59763 7.17962 7.59775 8.45264
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.037207 B = 0.007265 C = 0.006267
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 752.357661 B = 3852.906544 C = 4466.471694
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 N -0.705 5.705
3 C 0.117 3.883
4 C -0.057 4.057
5 C -0.159 4.159
6 C -0.122 4.122
7 C -0.136 4.136
8 C 0.016 3.984
9 C -0.115 4.115
10 C -0.266 4.266
11 C 0.052 3.948
12 N -0.316 5.316
13 C -0.373 4.373
14 H 0.103 0.897
15 C -0.002 4.002
16 N -0.886 5.886
17 Si 1.013 2.987
18 H -0.257 1.257
19 H -0.270 1.270
20 H -0.267 1.267
21 H 0.074 0.926
22 H 0.033 0.967
23 H 0.060 0.940
24 H 0.344 0.656
25 H 0.054 0.946
26 H 0.066 0.934
27 H 0.143 0.857
28 H 0.145 0.855
29 H 0.105 0.895
30 H 0.136 0.864
31 H 0.155 0.845
32 H 0.283 0.717
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.570 2.645 7.720 9.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 N -0.336 5.336
3 C -0.011 4.011
4 C -0.058 4.058
5 C -0.179 4.179
6 C -0.141 4.141
7 C -0.157 4.157
8 C -0.095 4.095
9 C -0.121 4.121
10 C -0.291 4.291
11 C -0.082 4.082
12 N 0.020 4.980
13 C -0.500 4.500
14 H 0.121 0.879
15 C -0.206 4.206
16 N -0.519 5.519
17 Si 0.833 3.167
18 H -0.181 1.181
19 H -0.195 1.195
20 H -0.191 1.191
21 H 0.093 0.907
22 H 0.052 0.948
23 H 0.079 0.921
24 H 0.162 0.838
25 H 0.072 0.928
26 H 0.084 0.916
27 H 0.161 0.839
28 H 0.163 0.837
29 H 0.123 0.877
30 H 0.154 0.846
31 H 0.172 0.828
32 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -5.222 2.408 6.697 8.827
hybrid contribution 0.664 -0.026 0.020 0.665
sum -4.558 2.382 6.717 8.459
Atomic orbital electron populations
1.22217 0.86497 1.02421 1.00643 1.60288 1.08609 1.13938 1.50796
1.20655 0.89675 0.89991 1.00774 1.19335 0.95117 1.00114 0.91244
1.20861 0.93923 1.06048 0.97109 1.20861 0.94473 1.02217 0.96552
1.20144 0.98770 1.05848 0.90891 1.19009 0.94725 1.09167 0.86570
1.19064 0.91454 1.07325 0.94264 1.21405 0.96868 1.18727 0.92120
1.22072 0.85328 1.03466 0.97293 1.40387 1.05549 1.48195 1.03916
1.20178 0.82915 1.38061 1.08801 0.87890 1.26510 1.04843 0.92749
0.96533 1.70018 1.36369 1.27656 1.17859 0.84603 0.75044 0.78729
0.78294 1.18102 1.19510 1.19146 0.90682 0.94835 0.92127 0.83828
0.92823 0.91581 0.83945 0.83701 0.87684 0.84579 0.82782 0.90708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.69 10.70 127.69 1.37 2.06 16
2 N -0.71 -20.77 6.84 -541.23 -3.70 -24.48 16
3 C 0.12 3.63 5.73 85.55 0.49 4.12 16
4 C -0.06 -2.20 5.42 -19.67 -0.11 -2.31 16
5 C -0.16 -5.39 9.66 22.28 0.22 -5.17 16
6 C -0.12 -4.35 10.02 22.31 0.22 -4.12 16
7 C -0.14 -6.05 9.95 22.36 0.22 -5.82 16
8 C 0.02 0.82 6.75 38.92 0.26 1.08 16
9 C -0.11 -5.51 6.16 -20.17 -0.12 -5.63 16
10 C -0.27 -13.27 10.95 23.57 0.26 -13.01 16
11 C 0.05 2.86 9.89 82.99 0.82 3.68 16
12 N -0.32 -17.81 2.92 -342.90 -1.00 -18.81 16
13 C -0.37 -20.70 9.93 84.00 0.83 -19.87 16
14 H 0.10 5.48 7.85 -2.91 -0.02 5.46 16
15 C 0.00 -0.11 5.35 84.90 0.45 0.34 16
16 N -0.89 -48.43 10.85 21.65 0.23 -48.19 16
17 Si 1.01 40.17 29.57 68.60 2.03 42.20 16
18 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16
19 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16
20 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16
21 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16
22 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16
23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
24 H 0.34 9.51 8.81 -89.70 -0.79 8.72 16
25 H 0.05 1.36 8.01 -2.39 -0.02 1.34 16
26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16
27 H 0.14 3.65 8.03 -2.91 -0.02 3.62 16
28 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16
29 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16
30 H 0.14 6.13 8.06 -2.91 -0.02 6.11 16
31 H 0.15 8.64 6.34 -2.91 -0.02 8.62 16
32 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16
Total: -1.00 -63.68 276.08 2.80 -60.88
By element:
Atomic # 1 Polarization: 32.72 SS G_CDS: 0.33 Total: 33.05 kcal
Atomic # 6 Polarization: -49.57 SS G_CDS: 4.92 Total: -44.65 kcal
Atomic # 7 Polarization: -87.01 SS G_CDS: -4.47 Total: -91.48 kcal
Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal
Total: -63.68 2.80 -60.88 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070634787.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.697 kcal
(2) G-P(sol) polarization free energy of solvation -63.681 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.017 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.877 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds