Wall clock time and date at job start Mon Mar 30 2020 02:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.39044 * 119.71304 * 59.99996 * 4 2 1 6 6 C 1.36353 * 120.76338 * 179.97438 * 5 4 2 7 7 C 1.40548 * 119.84689 * 0.02562 * 6 5 4 8 8 N 1.33961 * 133.20012 * 179.97438 * 7 6 5 9 9 C 1.32471 * 109.78265 * 180.02562 * 8 7 6 10 10 C 1.40190 * 125.30618 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99908 * 179.97438 * 10 9 8 12 12 C 1.40351 * 119.99964 * 359.97438 * 10 9 8 13 13 N 1.30589 * 119.99922 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99986 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47100 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47049 * 119.99818 * 14 12 10 17 17 H 1.48505 * 109.46947 * 240.00160 * 14 12 10 18 18 N 1.37846 * 109.38761 * 0.02562 * 9 8 7 19 19 H 0.97007 * 126.53767 * 179.97438 * 18 9 8 20 20 C 1.37960 * 106.92636 * 359.97438 * 18 9 8 21 21 C 1.37955 * 119.71426 * 239.72663 * 4 2 1 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 29 29 H 1.07994 * 119.61924 * 359.97438 * 5 4 2 30 30 H 1.07997 * 120.07888 * 180.02562 * 6 5 4 31 31 H 0.96996 * 119.99557 * 179.97438 * 13 12 10 32 32 H 1.08005 * 120.11810 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6928 -0.2301 -2.4904 6 6 2.1358 -0.8558 -3.6180 7 6 2.9449 -2.0000 -3.5111 8 7 3.5157 -2.8073 -4.4150 9 6 4.1919 -3.7645 -3.7976 10 6 4.9139 -4.7850 -4.4321 11 1 5.4362 -5.5239 -3.8425 12 6 4.9579 -4.8465 -5.8336 13 7 4.3259 -3.9533 -6.5465 14 14 5.9205 -6.2058 -6.6791 15 1 6.5420 -7.0831 -5.6547 16 1 5.0031 -7.0079 -7.5276 17 1 6.9824 -5.6067 -7.5270 18 7 4.0749 -3.6008 -2.4339 19 1 4.4707 -4.1621 -1.7487 20 6 3.2877 -2.4865 -2.2292 21 6 2.8297 -1.8282 -1.0972 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9562 0.8901 29 1 1.0709 0.6486 -2.5769 30 1 1.8656 -0.4730 -4.5911 31 1 4.3567 -3.9956 -7.5150 32 1 3.0923 -2.1926 -0.1149 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071743267.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:11 Heat of formation + Delta-G solvation = 40.018403 kcal Electronic energy + Delta-G solvation = -15255.313560 eV Core-core repulsion = 12794.218117 eV Total energy + Delta-G solvation = -2461.095443 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28162 -37.29799 -34.06863 -33.16472 -31.36522 -28.93749 -28.19380 -26.83112 -25.64626 -22.04359 -21.43723 -20.07946 -19.30319 -17.40657 -16.17232 -15.58900 -14.99836 -14.66710 -13.71620 -13.65151 -13.14594 -12.90766 -12.84237 -12.75972 -12.03537 -11.97787 -11.51011 -11.39353 -11.00342 -10.86849 -10.78964 -10.33446 -10.30322 -10.29910 -10.02397 -9.50985 -9.01501 -7.93220 -7.25957 -6.85995 -6.67602 -4.62242 2.23295 2.71418 2.98298 3.02749 3.07268 3.82350 4.13950 4.48236 4.93574 5.24815 5.28809 5.49434 5.62433 5.75360 5.87207 5.87999 5.94262 6.11195 6.11906 6.27663 6.41853 6.48262 6.56602 6.56871 6.79422 6.93643 7.00102 7.23372 7.47304 7.64437 7.71588 7.94506 7.99410 8.31954 8.65311 9.13487 9.95063 10.21796 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.067103 B = 0.005745 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.170777 B = 4873.043423 C = 5104.449964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.039 4.039 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.113 4.113 6 C -0.127 4.127 7 C 0.107 3.893 8 N -0.535 5.535 9 C 0.417 3.583 10 C -0.445 4.445 11 H 0.087 0.913 12 C 0.077 3.923 13 N -0.717 5.717 14 Si 0.920 3.080 15 H -0.261 1.261 16 H -0.271 1.271 17 H -0.271 1.271 18 N -0.654 5.654 19 H 0.401 0.599 20 C -0.006 4.006 21 C -0.100 4.100 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.279 0.721 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 3.242 7.366 8.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.143 4.143 5 C -0.134 4.134 6 C -0.148 4.148 7 C -0.021 4.021 8 N -0.260 5.260 9 C 0.178 3.822 10 C -0.482 4.482 11 H 0.105 0.895 12 C -0.150 4.150 13 N -0.339 5.339 14 Si 0.743 3.257 15 H -0.184 1.184 16 H -0.196 1.196 17 H -0.197 1.197 18 N -0.269 5.269 19 H 0.236 0.764 20 C -0.115 4.115 21 C -0.122 4.122 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.090 0.910 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.427 3.435 6.217 7.507 hybrid contribution 0.720 -1.016 0.818 1.490 sum -1.707 2.419 7.036 7.634 Atomic orbital electron populations 1.21837 0.95488 1.01525 1.00905 1.19829 0.94960 0.95252 0.95734 1.21839 1.01040 0.95980 1.00905 1.18929 1.03693 0.97977 0.93685 1.20005 1.01871 0.99856 0.91662 1.19765 1.01424 0.95959 0.97681 1.19614 0.97405 0.95889 0.89192 1.71375 1.19866 1.07439 1.27324 1.20440 0.91919 0.93337 0.76504 1.18535 1.28707 1.09323 0.91679 0.89453 1.25863 0.95118 0.96792 0.97273 1.69988 1.28335 1.28458 1.07120 0.86084 0.79574 0.80425 0.79603 1.18449 1.19650 1.19653 1.43399 1.48341 1.26386 1.08782 0.76396 1.18896 1.02191 0.93362 0.97064 1.19462 1.01449 0.96860 0.94404 0.92631 0.92879 0.93525 0.91838 0.92881 0.92630 0.93525 0.87876 0.87413 0.91017 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.00 37.16 0.33 -1.49 16 2 C -0.04 -0.57 3.09 -91.77 -0.28 -0.86 16 3 C -0.14 -1.83 9.00 37.16 0.33 -1.50 16 4 C -0.14 -2.61 4.80 -104.43 -0.50 -3.11 16 5 C -0.11 -2.21 8.62 -39.96 -0.34 -2.55 16 6 C -0.13 -2.91 10.07 -39.39 -0.40 -3.31 16 7 C 0.11 2.81 7.21 -84.89 -0.61 2.20 16 8 N -0.54 -15.52 9.33 -10.31 -0.10 -15.62 16 9 C 0.42 11.32 7.57 -155.68 -1.18 10.14 16 10 C -0.44 -11.46 9.47 -38.05 -0.36 -11.82 16 11 H 0.09 2.03 7.85 -52.49 -0.41 1.62 16 12 C 0.08 1.91 5.50 -17.29 -0.10 1.82 16 13 N -0.72 -19.18 11.86 55.57 0.66 -18.52 16 14 Si 0.92 17.98 29.56 -169.99 -5.03 12.95 16 15 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 N -0.65 -15.44 6.33 -9.88 -0.06 -15.50 16 19 H 0.40 7.91 8.96 -40.82 -0.37 7.55 16 20 C -0.01 -0.14 7.30 -83.75 -0.61 -0.76 16 21 C -0.10 -2.04 9.68 -39.51 -0.38 -2.42 16 22 H 0.05 0.72 7.36 -51.93 -0.38 0.34 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.89 7.86 -51.93 -0.41 0.48 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.72 7.36 -51.93 -0.38 0.34 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.10 1.72 7.05 -52.49 -0.37 1.35 16 30 H 0.11 2.37 8.06 -52.49 -0.42 1.94 16 31 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 32 H 0.10 1.72 7.93 -52.48 -0.42 1.30 16 LS Contribution 272.98 15.07 4.11 4.11 Total: -1.00 -29.93 272.98 -8.49 -38.42 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -3.98 Total: 7.82 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -4.09 Total: -13.67 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.50 Total: -49.64 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.93 -8.49 -38.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071743267.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.437 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds