Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.39044 * 119.71304 * 59.99996 * 4 2 1 6 6 C 1.36353 * 120.76338 * 179.97438 * 5 4 2 7 7 C 1.40548 * 119.84689 * 0.02562 * 6 5 4 8 8 N 1.33961 * 133.20012 * 179.97438 * 7 6 5 9 9 C 1.32471 * 109.78265 * 180.02562 * 8 7 6 10 10 C 1.40190 * 125.30618 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99908 * 179.97438 * 10 9 8 12 12 C 1.40351 * 119.99964 * 359.97438 * 10 9 8 13 13 N 1.30589 * 119.99922 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99986 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47100 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47049 * 119.99818 * 14 12 10 17 17 H 1.48505 * 109.46947 * 240.00160 * 14 12 10 18 18 N 1.37846 * 109.38761 * 0.02562 * 9 8 7 19 19 H 0.97007 * 126.53767 * 179.97438 * 18 9 8 20 20 C 1.37960 * 106.92636 * 359.97438 * 18 9 8 21 21 C 1.37955 * 119.71426 * 239.72663 * 4 2 1 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 29 29 H 1.07994 * 119.61924 * 359.97438 * 5 4 2 30 30 H 1.07997 * 120.07888 * 180.02562 * 6 5 4 31 31 H 0.96996 * 119.99557 * 179.97438 * 13 12 10 32 32 H 1.08005 * 120.11810 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6928 -0.2301 -2.4904 6 6 2.1358 -0.8558 -3.6180 7 6 2.9449 -2.0000 -3.5111 8 7 3.5157 -2.8073 -4.4150 9 6 4.1919 -3.7645 -3.7976 10 6 4.9139 -4.7850 -4.4321 11 1 5.4362 -5.5239 -3.8425 12 6 4.9579 -4.8465 -5.8336 13 7 4.3259 -3.9533 -6.5465 14 14 5.9205 -6.2058 -6.6791 15 1 6.5420 -7.0831 -5.6547 16 1 5.0031 -7.0079 -7.5276 17 1 6.9824 -5.6067 -7.5270 18 7 4.0749 -3.6008 -2.4339 19 1 4.4707 -4.1621 -1.7487 20 6 3.2877 -2.4865 -2.2292 21 6 2.8297 -1.8282 -1.0972 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9562 0.8901 29 1 1.0709 0.6486 -2.5769 30 1 1.8656 -0.4730 -4.5911 31 1 4.3567 -3.9956 -7.5150 32 1 3.0923 -2.1926 -0.1149 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071743267.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = 22.424245 kcal Electronic energy + Delta-G solvation = -15256.076500 eV Core-core repulsion = 12794.218117 eV Total energy + Delta-G solvation = -2461.858383 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.10442 -38.83131 -35.71693 -34.80501 -33.18386 -30.72819 -29.95050 -27.83633 -27.39917 -23.57084 -23.18250 -21.96092 -20.80713 -19.23142 -18.00406 -17.19003 -16.62895 -16.18430 -15.48994 -15.03092 -14.78214 -14.53003 -14.31336 -14.05673 -13.55872 -13.21567 -13.04126 -12.91663 -12.59873 -12.30194 -12.24708 -11.91321 -11.74985 -11.61638 -11.37675 -11.31758 -10.83198 -9.86920 -9.05010 -8.66779 -8.50931 -6.56149 0.48830 0.99215 1.42238 1.45224 1.59947 2.18805 2.33436 2.72783 3.15678 3.59300 3.90377 4.06394 4.24492 4.31222 4.49710 4.67483 4.70588 4.83646 4.93017 4.94059 5.09044 5.11798 5.14358 5.20095 5.34540 5.45803 5.53935 5.55887 5.65775 5.92195 6.01633 6.12517 6.27210 6.50818 6.77936 7.32439 8.05008 8.42364 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.067103 B = 0.005745 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.170777 B = 4873.043423 C = 5104.449964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.040 4.040 3 C -0.139 4.139 4 C -0.119 4.119 5 C -0.105 4.105 6 C -0.143 4.143 7 C 0.050 3.950 8 N -0.583 5.583 9 C 0.387 3.613 10 C -0.474 4.474 11 H 0.104 0.896 12 C 0.029 3.971 13 N -0.770 5.770 14 Si 1.006 2.994 15 H -0.247 1.247 16 H -0.267 1.267 17 H -0.267 1.267 18 N -0.646 5.646 19 H 0.415 0.585 20 C -0.020 4.020 21 C -0.106 4.106 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.138 0.862 30 H 0.104 0.896 31 H 0.284 0.716 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 3.758 9.481 10.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.058 4.058 3 C -0.196 4.196 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.164 4.164 7 C -0.075 4.075 8 N -0.309 5.309 9 C 0.147 3.853 10 C -0.512 4.512 11 H 0.122 0.878 12 C -0.193 4.193 13 N -0.394 5.394 14 Si 0.825 3.175 15 H -0.170 1.170 16 H -0.192 1.192 17 H -0.192 1.192 18 N -0.262 5.262 19 H 0.253 0.747 20 C -0.129 4.129 21 C -0.128 4.128 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.155 0.845 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.810 3.979 8.388 9.700 hybrid contribution 0.692 -0.978 0.342 1.246 sum -2.119 3.002 8.731 9.472 Atomic orbital electron populations 1.21822 0.93881 1.01491 1.02403 1.19958 0.96194 0.95912 0.93743 1.21824 1.00544 0.94833 1.02401 1.19568 1.00796 0.96519 0.95251 1.20373 1.01052 1.00180 0.90908 1.20032 1.01656 0.95724 0.99030 1.20120 0.99659 0.97569 0.90194 1.71236 1.21393 1.08889 1.29402 1.20811 0.92762 0.93897 0.77873 1.19035 1.29481 1.09825 0.92815 0.87756 1.27009 0.95593 0.99182 0.97534 1.70126 1.30517 1.31054 1.07676 0.84821 0.77726 0.76725 0.78271 1.16989 1.19151 1.19161 1.43277 1.48178 1.26563 1.08216 0.74653 1.19270 1.02570 0.93630 0.97427 1.19899 1.01260 0.97042 0.94594 0.92591 0.93728 0.90702 0.90522 0.93729 0.92592 0.90703 0.84458 0.87785 0.90569 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.00 71.98 0.65 -2.37 16 2 C -0.04 -0.99 3.09 -11.54 -0.04 -1.03 16 3 C -0.14 -3.02 9.00 71.98 0.65 -2.37 16 4 C -0.12 -4.12 4.80 -19.74 -0.09 -4.22 16 5 C -0.10 -3.92 8.62 22.02 0.19 -3.73 16 6 C -0.14 -6.71 10.07 22.39 0.23 -6.48 16 7 C 0.05 2.73 7.21 40.14 0.29 3.02 16 8 N -0.58 -35.68 9.33 -186.52 -1.74 -37.42 16 9 C 0.39 21.99 7.57 133.69 1.01 23.00 16 10 C -0.47 -25.23 9.47 23.26 0.22 -25.01 16 11 H 0.10 4.93 7.85 -2.91 -0.02 4.91 16 12 C 0.03 1.49 5.50 85.39 0.47 1.96 16 13 N -0.77 -43.20 11.86 21.89 0.26 -42.94 16 14 Si 1.01 37.37 29.56 68.60 2.03 39.39 16 15 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 16 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 17 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16 18 N -0.65 -31.30 6.33 -185.17 -1.17 -32.47 16 19 H 0.42 16.63 8.96 -92.70 -0.83 15.80 16 20 C -0.02 -0.97 7.30 39.06 0.29 -0.68 16 21 C -0.11 -4.18 9.68 22.32 0.22 -3.96 16 22 H 0.05 1.22 7.36 -2.39 -0.02 1.20 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.08 1.78 7.86 -2.39 -0.02 1.76 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.22 7.36 -2.39 -0.02 1.20 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.14 4.15 7.05 -2.91 -0.02 4.13 16 30 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 31 H 0.28 14.28 8.29 -92.71 -0.77 13.51 16 32 H 0.13 4.13 7.93 -2.91 -0.02 4.10 16 Total: -1.00 -68.77 272.98 3.75 -65.02 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.30 Total: 30.28 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 4.07 Total: -21.87 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -2.65 Total: -112.83 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.39 kcal Total: -68.77 3.75 -65.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071743267.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.443 kcal (2) G-P(sol) polarization free energy of solvation -68.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds