Wall clock time and date at job start Mon Mar 30 2020 03:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99637 * 2 1 4 4 H 1.48507 * 109.46949 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47395 * 299.99846 * 3 2 1 6 6 H 1.48493 * 109.47116 * 60.00157 * 3 2 1 7 7 C 1.37877 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99821 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99724 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47078 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47074 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46843 * 179.97438 * 11 10 9 13 13 C 1.38256 * 120.02603 * 90.00736 * 12 11 10 14 14 C 1.38105 * 119.93154 * 180.02562 * 13 12 11 15 15 C 1.38497 * 120.21438 * 359.97035 * 14 13 12 16 16 C 1.38216 * 119.85394 * 0.02955 * 15 14 13 17 17 C 1.38096 * 120.03705 * 269.99939 * 12 11 10 18 18 C 1.51362 * 109.76055 * 180.02562 * 16 15 14 19 19 C 1.54347 * 105.17257 * 342.81694 * 18 16 15 20 20 C 1.51680 * 130.30808 * 179.85164 * 15 14 13 21 21 H 0.97001 * 120.00241 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46902 * 60.00023 * 9 7 2 23 23 H 1.09006 * 109.47244 * 300.00252 * 9 7 2 24 24 H 1.09004 * 109.46882 * 60.00032 * 10 9 7 25 25 H 1.08999 * 109.47059 * 299.99789 * 10 9 7 26 26 H 1.08997 * 109.46502 * 60.00319 * 11 10 9 27 27 H 1.08999 * 109.47095 * 299.99877 * 11 10 9 28 28 H 1.08002 * 120.03364 * 359.97438 * 13 12 11 29 29 H 1.08004 * 119.89275 * 179.97438 * 14 13 12 30 30 H 1.08005 * 119.89126 * 0.02901 * 17 12 11 31 31 H 1.09002 * 110.30308 * 223.88922 * 18 16 15 32 32 H 1.09003 * 110.38787 * 101.77978 * 18 16 15 33 33 H 1.09002 * 110.82432 * 144.56982 * 19 18 16 34 34 H 1.09005 * 110.82182 * 267.92439 * 19 18 16 35 35 H 1.08998 * 110.25544 * 78.26854 * 20 15 14 36 36 H 1.09000 * 110.49386 * 316.01666 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4597 -6.1325 -0.0005 13 6 2.9101 -6.6583 1.1962 14 6 3.8080 -7.7076 1.1933 15 6 4.2588 -8.2359 -0.0049 16 6 3.8086 -7.7102 -1.2013 17 6 2.9081 -6.6579 -1.1963 18 6 4.4424 -8.4534 -2.3576 19 6 5.6529 -9.1921 -1.7481 20 6 5.2315 -9.3682 -0.2738 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5566 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8720 -3.6042 0.8895 25 1 2.8719 -3.6043 -0.8905 26 1 0.8535 -5.0450 -0.8897 27 1 0.8540 -5.0446 0.8903 28 1 2.5607 -6.2484 2.1323 29 1 4.1597 -8.1176 2.1286 30 1 2.5560 -6.2464 -2.1308 31 1 4.7738 -7.7510 -3.1225 32 1 3.7373 -9.1684 -2.7815 33 1 5.7980 -10.1599 -2.2280 34 1 6.5551 -8.5850 -1.8231 35 1 4.7386 -10.3303 -0.1341 36 1 6.1000 -9.2887 0.3801 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082531287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:50 Heat of formation + Delta-G solvation = -12.631560 kcal Electronic energy + Delta-G solvation = -14955.486458 eV Core-core repulsion = 12595.648285 eV Total energy + Delta-G solvation = -2359.838173 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.99359 -36.41434 -34.03790 -32.26888 -31.04509 -29.21986 -27.57227 -26.05850 -23.40208 -22.24232 -20.80619 -20.36900 -19.56937 -16.30812 -15.94530 -15.77993 -15.02588 -14.63678 -14.39133 -13.68720 -13.09659 -12.95418 -12.93484 -12.81467 -12.28392 -11.87635 -11.63132 -11.29495 -11.28013 -11.07246 -10.94882 -10.82089 -10.54924 -10.49870 -10.40280 -9.63012 -9.30456 -9.04864 -8.55645 -8.31777 -8.09533 -5.96775 -3.98754 1.55077 1.59284 3.33017 3.40306 3.45060 3.91787 4.41140 4.49103 4.53738 4.87194 5.07326 5.15529 5.20581 5.36391 5.38988 5.56986 5.60979 5.68044 5.68715 5.78982 5.83252 5.91480 6.04026 6.13793 6.18437 6.33768 6.49291 6.61263 6.66162 6.77983 6.95931 7.02731 7.15755 7.25981 7.72334 7.87179 8.04126 8.47430 9.08811 9.65188 11.14604 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.045072 B = 0.004318 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.075677 B = 6482.364184 C = 6630.727256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.102 4.102 11 C -0.084 4.084 12 C -0.062 4.062 13 C -0.120 4.120 14 C -0.106 4.106 15 C -0.117 4.117 16 C -0.099 4.099 17 C -0.107 4.107 18 C -0.081 4.081 19 C -0.121 4.121 20 C -0.078 4.078 21 H 0.259 0.741 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.348 -18.654 -1.537 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.122 4.122 12 C -0.062 4.062 13 C -0.138 4.138 14 C -0.124 4.124 15 C -0.117 4.117 16 C -0.099 4.099 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.158 4.158 20 C -0.115 4.115 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.205 -18.538 -1.540 20.331 hybrid contribution 0.366 1.051 0.070 1.115 sum 8.571 -17.487 -1.471 19.530 Atomic orbital electron populations 1.69975 1.06043 1.26411 1.51183 1.25027 0.94838 0.99224 0.95419 0.86559 0.80160 0.83874 0.77558 1.19750 1.21019 1.21025 1.21319 0.93091 0.91137 1.50143 0.92691 1.19134 0.94035 0.91371 0.97206 1.21617 0.98949 0.92934 1.00475 1.20788 0.96109 0.92805 1.02449 1.20081 0.97380 0.96221 0.92552 1.20983 0.98112 0.96683 0.98005 1.20550 0.98146 0.97061 0.96687 1.20535 0.99516 0.98180 0.93470 1.20504 0.97619 0.96395 0.95340 1.20544 0.97836 0.96101 0.98046 1.21019 0.96530 0.98234 0.96056 1.22282 0.97968 1.00436 0.95140 1.21040 0.97341 0.96467 0.96680 0.93109 0.96593 0.96595 0.93356 0.93376 0.91463 0.91382 0.85905 0.86717 0.86334 0.90838 0.90529 0.90867 0.91070 0.90729 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.19 5.14 -26.73 -0.14 -2.32 16 11 C -0.08 -1.50 5.35 -27.88 -0.15 -1.65 16 12 C -0.06 -1.01 5.13 -104.67 -0.54 -1.55 16 13 C -0.12 -1.78 9.70 -39.62 -0.38 -2.17 16 14 C -0.11 -1.43 10.04 -39.53 -0.40 -1.82 16 15 C -0.12 -1.52 6.15 -104.05 -0.64 -2.16 16 16 C -0.10 -1.34 6.14 -104.21 -0.64 -1.98 16 17 C -0.11 -1.63 9.69 -39.54 -0.38 -2.01 16 18 C -0.08 -0.85 6.77 -26.85 -0.18 -1.03 16 19 C -0.12 -1.07 7.07 -25.32 -0.18 -1.25 16 20 C -0.08 -0.77 6.80 -26.70 -0.18 -0.95 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 27 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 28 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 30 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -31.04 299.47 -10.01 -41.05 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -5.88 Total: -3.56 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -4.36 Total: -32.36 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.63 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.04 -10.01 -41.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082531287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.421 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds