Wall clock time and date at job start Mon Mar 30 2020 02:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46977 * 2 1 4 4 N 1.46497 * 109.47013 * 119.99982 * 2 1 3 5 5 C 1.36111 * 126.28836 * 300.00133 * 4 2 1 6 6 N 1.30060 * 110.17295 * 180.02562 * 5 4 2 7 7 C 1.35944 * 109.54215 * 359.97438 * 6 5 4 8 8 C 1.39145 * 133.44706 * 179.97438 * 7 6 5 9 9 C 1.40324 * 119.41754 * 180.02562 * 8 7 6 10 10 C 1.41318 * 120.01007 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99758 * 154.12506 * 10 9 8 12 12 C 1.39883 * 120.00097 * 334.40088 * 10 9 8 13 13 N 1.30878 * 119.99486 * 343.16342 * 12 10 9 14 14 Si 1.86796 * 120.00025 * 163.16898 * 12 10 9 15 15 H 1.48496 * 109.47530 * 89.99749 * 14 12 10 16 16 H 1.48498 * 109.46857 * 209.99944 * 14 12 10 17 17 H 1.48501 * 109.47107 * 329.99372 * 14 12 10 18 18 C 1.41127 * 119.97592 * 0.25174 * 9 8 7 19 19 C 1.36104 * 120.36376 * 359.47207 * 18 9 8 20 20 C 1.37751 * 126.28421 * 119.99797 * 4 2 1 21 21 H 1.08999 * 109.47129 * 299.99957 * 1 2 3 22 22 H 1.08996 * 109.46981 * 59.99696 * 1 2 3 23 23 H 1.08993 * 109.47220 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46663 * 239.99880 * 2 1 3 25 25 H 1.08995 * 109.46507 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46866 * 300.00140 * 3 2 1 27 27 H 1.08999 * 109.47156 * 60.00059 * 3 2 1 28 28 H 1.08001 * 124.91495 * 0.03306 * 5 4 2 29 29 H 1.07996 * 120.28808 * 0.06864 * 8 7 6 30 30 H 0.97003 * 119.99522 * 180.02562 * 13 12 10 31 31 H 1.08000 * 119.81827 * 179.74719 * 18 9 8 32 32 H 1.08002 * 119.86012 * 180.25499 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7697 -0.3389 2.4873 6 7 2.3568 -1.1683 3.2991 7 6 3.0234 -2.1114 2.5820 8 6 3.8011 -3.2098 2.9355 9 6 4.3653 -4.0075 1.9283 10 6 5.1577 -5.1257 2.2732 11 1 5.2456 -5.9568 1.5891 12 6 5.8235 -5.1586 3.5029 13 7 5.9922 -4.0547 4.1854 14 14 6.4719 -6.7781 4.1709 15 1 7.8622 -6.9892 3.6940 16 1 6.4578 -6.7422 5.6554 17 1 5.6109 -7.8903 3.6945 18 6 4.1460 -3.6894 0.5710 19 6 3.3799 -2.6171 0.2308 20 6 2.8135 -1.8152 1.2207 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.1713 0.5064 2.7935 29 1 3.9684 -3.4465 3.9758 30 1 6.4543 -4.0774 5.0380 31 1 4.5848 -4.3027 -0.2020 32 1 3.2140 -2.3835 -0.8105 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082589031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:45 Heat of formation + Delta-G solvation = 57.992998 kcal Electronic energy + Delta-G solvation = -15478.104171 eV Core-core repulsion = 13017.788165 eV Total energy + Delta-G solvation = -2460.316006 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91282 -36.51173 -35.18824 -33.17503 -30.68593 -28.79109 -28.14145 -27.29162 -24.97012 -22.50794 -21.72321 -20.52613 -18.61099 -17.30745 -16.41059 -15.75777 -14.84151 -14.58764 -14.25252 -13.98500 -13.33754 -12.85463 -12.57901 -12.56779 -12.31388 -12.25075 -11.62961 -11.39681 -11.21227 -11.03171 -10.97842 -10.65966 -10.19188 -9.92839 -9.84368 -9.26742 -8.97159 -8.70565 -7.12291 -6.79937 -6.59197 -4.19026 2.35678 2.87963 3.16225 3.19675 3.27485 3.46248 3.95887 4.04884 4.72428 4.76544 5.04346 5.11807 5.20710 5.45893 5.51188 5.66903 5.72454 5.74292 5.84569 6.00689 6.15270 6.16657 6.56724 6.88597 6.95786 7.04117 7.28680 7.49637 7.71392 7.94618 8.10832 8.16375 8.34437 8.58077 8.97277 9.01293 9.13839 10.35915 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053759 B = 0.006502 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.718670 B = 4305.166766 C = 4576.823631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 C -0.161 4.161 4 N -0.493 5.493 5 C 0.226 3.774 6 N -0.510 5.510 7 C 0.070 3.930 8 C -0.136 4.136 9 C 0.093 3.907 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.075 3.925 13 N -0.795 5.795 14 Si 0.905 3.095 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.262 1.262 18 C -0.158 4.158 19 C -0.110 4.110 20 C -0.039 4.039 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.188 0.812 29 H 0.125 0.875 30 H 0.279 0.721 31 H 0.103 0.897 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 6.689 -6.581 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 C -0.219 4.219 4 N -0.189 5.189 5 C -0.059 4.059 6 N -0.231 5.231 7 C -0.045 4.045 8 C -0.159 4.159 9 C 0.089 3.911 10 C -0.496 4.496 11 H 0.095 0.905 12 C -0.142 4.142 13 N -0.421 5.421 14 Si 0.730 3.270 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.186 1.186 18 C -0.178 4.178 19 C -0.131 4.131 20 C -0.143 4.143 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.108 0.892 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.205 0.795 29 H 0.143 0.857 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.708 6.828 -5.596 11.088 hybrid contribution 0.345 -0.502 -0.570 0.834 sum -6.363 6.326 -6.166 10.887 Atomic orbital electron populations 1.22174 0.94436 1.02840 1.02397 1.21059 0.94365 0.93225 0.87765 1.22177 1.02210 0.95126 1.02384 1.44988 1.43718 1.24268 1.05957 1.24661 1.01473 1.00392 0.79410 1.70394 1.14278 1.05899 1.32545 1.19045 1.00358 0.96823 0.88232 1.20425 0.99957 0.95209 1.00275 1.17330 0.91085 0.92910 0.89773 1.19370 1.25581 1.03033 1.01618 0.90539 1.25837 0.94699 0.97260 0.96417 1.69855 1.31866 1.27501 1.12915 0.86375 0.79465 0.82769 0.78424 1.19715 1.20222 1.18608 1.20769 1.02480 0.97935 0.96614 1.19151 1.02020 0.97053 0.94855 1.18638 1.04829 0.93503 0.97288 0.92034 0.91329 0.91938 0.89208 0.91899 0.91335 0.92024 0.79491 0.85714 0.91026 0.87892 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.25 37.16 0.34 -1.40 16 2 C 0.14 1.88 3.59 -67.93 -0.24 1.64 16 3 C -0.16 -1.79 9.25 37.16 0.34 -1.44 16 4 N -0.49 -9.23 2.66 -108.49 -0.29 -9.52 16 5 C 0.23 4.32 11.49 -89.76 -1.03 3.29 16 6 N -0.51 -12.33 11.29 -12.05 -0.14 -12.47 16 7 C 0.07 1.85 7.21 -84.70 -0.61 1.24 16 8 C -0.14 -3.84 8.73 -38.46 -0.34 -4.17 16 9 C 0.09 2.54 5.57 -106.85 -0.59 1.95 16 10 C -0.47 -12.55 9.04 -37.80 -0.34 -12.90 16 11 H 0.08 1.95 7.90 -52.49 -0.41 1.53 16 12 C 0.07 1.95 5.14 -17.34 -0.09 1.86 16 13 N -0.80 -21.70 10.96 55.54 0.61 -21.09 16 14 Si 0.90 19.26 29.59 -169.99 -5.03 14.23 16 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 17 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 18 C -0.16 -3.83 9.71 -39.25 -0.38 -4.21 16 19 C -0.11 -2.46 9.79 -39.91 -0.39 -2.85 16 20 C -0.04 -0.90 6.88 -83.76 -0.58 -1.47 16 21 H 0.06 0.63 7.95 -51.93 -0.41 0.21 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.09 1.21 7.55 -51.93 -0.39 0.82 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.64 7.95 -51.93 -0.41 0.23 16 28 H 0.19 2.64 8.06 -52.49 -0.42 2.22 16 29 H 0.13 3.72 6.19 -52.49 -0.32 3.40 16 30 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 31 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 32 H 0.09 1.68 7.70 -52.49 -0.40 1.28 16 LS Contribution 273.65 15.07 4.12 4.12 Total: -1.00 -31.13 273.65 -8.66 -39.79 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.03 Total: 3.41 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -3.91 Total: -18.48 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.18 Total: -43.08 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.13 -8.66 -39.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.787 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds