Wall clock time and date at job start Mon Mar 30 2020 02:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46977 * 2 1 4 4 N 1.46497 * 109.47013 * 119.99982 * 2 1 3 5 5 C 1.36111 * 126.28836 * 300.00133 * 4 2 1 6 6 N 1.30060 * 110.17295 * 180.02562 * 5 4 2 7 7 C 1.35944 * 109.54215 * 359.97438 * 6 5 4 8 8 C 1.39145 * 133.44706 * 179.97438 * 7 6 5 9 9 C 1.40324 * 119.41754 * 180.02562 * 8 7 6 10 10 C 1.41318 * 120.01007 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99758 * 154.12506 * 10 9 8 12 12 C 1.39883 * 120.00097 * 334.40088 * 10 9 8 13 13 N 1.30878 * 119.99486 * 343.16342 * 12 10 9 14 14 Si 1.86796 * 120.00025 * 163.16898 * 12 10 9 15 15 H 1.48496 * 109.47530 * 89.99749 * 14 12 10 16 16 H 1.48498 * 109.46857 * 209.99944 * 14 12 10 17 17 H 1.48501 * 109.47107 * 329.99372 * 14 12 10 18 18 C 1.41127 * 119.97592 * 0.25174 * 9 8 7 19 19 C 1.36104 * 120.36376 * 359.47207 * 18 9 8 20 20 C 1.37751 * 126.28421 * 119.99797 * 4 2 1 21 21 H 1.08999 * 109.47129 * 299.99957 * 1 2 3 22 22 H 1.08996 * 109.46981 * 59.99696 * 1 2 3 23 23 H 1.08993 * 109.47220 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46663 * 239.99880 * 2 1 3 25 25 H 1.08995 * 109.46507 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46866 * 300.00140 * 3 2 1 27 27 H 1.08999 * 109.47156 * 60.00059 * 3 2 1 28 28 H 1.08001 * 124.91495 * 0.03306 * 5 4 2 29 29 H 1.07996 * 120.28808 * 0.06864 * 8 7 6 30 30 H 0.97003 * 119.99522 * 180.02562 * 13 12 10 31 31 H 1.08000 * 119.81827 * 179.74719 * 18 9 8 32 32 H 1.08002 * 119.86012 * 180.25499 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7697 -0.3389 2.4873 6 7 2.3568 -1.1683 3.2991 7 6 3.0234 -2.1114 2.5820 8 6 3.8011 -3.2098 2.9355 9 6 4.3653 -4.0075 1.9283 10 6 5.1577 -5.1257 2.2732 11 1 5.2456 -5.9568 1.5891 12 6 5.8235 -5.1586 3.5029 13 7 5.9922 -4.0547 4.1854 14 14 6.4719 -6.7781 4.1709 15 1 7.8622 -6.9892 3.6940 16 1 6.4578 -6.7422 5.6554 17 1 5.6109 -7.8903 3.6945 18 6 4.1460 -3.6894 0.5710 19 6 3.3799 -2.6171 0.2308 20 6 2.8135 -1.8152 1.2207 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.1713 0.5064 2.7935 29 1 3.9684 -3.4465 3.9758 30 1 6.4543 -4.0774 5.0380 31 1 4.5848 -4.3027 -0.2020 32 1 3.2140 -2.3835 -0.8105 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082589031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:45 Heat of formation + Delta-G solvation = 40.368275 kcal Electronic energy + Delta-G solvation = -15478.868436 eV Core-core repulsion = 13017.788165 eV Total energy + Delta-G solvation = -2461.080271 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.58334 -38.24392 -36.56074 -35.09855 -32.26143 -30.60998 -29.96668 -28.13107 -26.87439 -23.86407 -23.46049 -22.35757 -20.15532 -19.20424 -17.85430 -17.51482 -16.62764 -16.07155 -15.78709 -15.29350 -14.89717 -14.35911 -14.29104 -14.00860 -13.77229 -13.19037 -13.07901 -12.99982 -12.71570 -12.45857 -12.31686 -12.13330 -11.93745 -11.80372 -11.65191 -11.02718 -10.76444 -10.50260 -9.00649 -8.65858 -8.52637 -6.22248 0.57803 1.03798 1.40046 1.51860 1.56940 2.04244 2.23553 2.26312 2.82598 3.72022 3.75290 3.80313 3.94617 4.08212 4.20767 4.39392 4.68412 4.71779 4.81301 4.87016 4.89259 5.03663 5.12155 5.14988 5.29653 5.32657 5.38454 5.55680 5.88462 6.04222 6.18042 6.23836 6.59801 6.73874 6.97816 7.05953 7.37220 8.44074 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053759 B = 0.006502 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.718670 B = 4305.166766 C = 4576.823631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 C -0.155 4.155 4 N -0.484 5.484 5 C 0.250 3.750 6 N -0.564 5.564 7 C 0.042 3.958 8 C -0.177 4.177 9 C 0.067 3.933 10 C -0.498 4.498 11 H 0.083 0.917 12 C 0.028 3.972 13 N -0.836 5.836 14 Si 0.983 3.017 15 H -0.259 1.259 16 H -0.273 1.273 17 H -0.256 1.256 18 C -0.173 4.173 19 C -0.097 4.097 20 C -0.046 4.046 21 H 0.071 0.929 22 H 0.102 0.898 23 H 0.044 0.956 24 H 0.092 0.908 25 H 0.041 0.959 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.242 0.758 29 H 0.090 0.910 30 H 0.283 0.717 31 H 0.123 0.877 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.134 8.060 -8.500 14.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.026 3.974 3 C -0.213 4.213 4 N -0.177 5.177 5 C -0.035 4.035 6 N -0.287 5.287 7 C -0.073 4.073 8 C -0.200 4.200 9 C 0.063 3.937 10 C -0.529 4.529 11 H 0.101 0.899 12 C -0.185 4.185 13 N -0.463 5.463 14 Si 0.804 3.196 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.180 1.180 18 C -0.193 4.193 19 C -0.117 4.117 20 C -0.152 4.152 21 H 0.090 0.910 22 H 0.121 0.879 23 H 0.063 0.937 24 H 0.110 0.890 25 H 0.060 0.940 26 H 0.121 0.879 27 H 0.090 0.910 28 H 0.258 0.742 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.078 8.233 -7.572 13.798 hybrid contribution 0.614 -0.712 -0.073 0.943 sum -7.464 7.521 -7.645 13.066 Atomic orbital electron populations 1.22152 0.91906 1.02419 1.04680 1.21583 0.96290 0.94088 0.85389 1.22161 1.00879 0.93544 1.04696 1.45369 1.41948 1.22726 1.07688 1.25625 0.99076 0.99734 0.79045 1.70345 1.16652 1.07316 1.34390 1.19257 1.00637 0.96990 0.90428 1.20240 1.03100 0.97754 0.98941 1.17690 0.91498 0.93339 0.91203 1.19709 1.26592 1.03613 1.02973 0.89893 1.26797 0.94553 1.00909 0.96216 1.69974 1.32900 1.29981 1.13431 0.85203 0.79163 0.77694 0.77583 1.18376 1.19826 1.17971 1.20998 1.03369 0.99181 0.95762 1.19509 0.99968 0.95559 0.96706 1.18812 1.05270 0.94951 0.96151 0.90959 0.87905 0.93701 0.89026 0.93965 0.87856 0.90956 0.74183 0.89181 0.90716 0.85933 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.25 71.98 0.67 -1.96 16 2 C 0.13 2.93 3.59 45.00 0.16 3.09 16 3 C -0.16 -2.74 9.25 71.98 0.67 -2.08 16 4 N -0.48 -16.96 2.66 -497.15 -1.32 -18.28 16 5 C 0.25 9.04 11.49 180.05 2.07 11.11 16 6 N -0.56 -27.66 11.29 -192.05 -2.17 -29.83 16 7 C 0.04 2.30 7.21 39.37 0.28 2.58 16 8 C -0.18 -10.67 8.73 23.00 0.20 -10.47 16 9 C 0.07 3.82 5.57 -21.31 -0.12 3.70 16 10 C -0.50 -28.09 9.04 23.43 0.21 -27.88 16 11 H 0.08 4.37 7.90 -2.91 -0.02 4.34 16 12 C 0.03 1.53 5.14 85.23 0.44 1.97 16 13 N -0.84 -48.28 10.96 21.82 0.24 -48.04 16 14 Si 0.98 40.71 29.59 68.60 2.03 42.74 16 15 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 C -0.17 -8.50 9.71 22.48 0.22 -8.28 16 19 C -0.10 -4.23 9.79 22.06 0.22 -4.02 16 20 C -0.05 -2.12 6.88 39.15 0.27 -1.85 16 21 H 0.07 1.10 7.95 -2.39 -0.02 1.08 16 22 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.09 2.10 7.55 -2.39 -0.02 2.08 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 26 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.14 7.95 -2.39 -0.02 1.12 16 28 H 0.24 5.72 8.06 -2.91 -0.02 5.70 16 29 H 0.09 5.87 6.19 -2.91 -0.02 5.85 16 30 H 0.28 14.93 8.30 -92.71 -0.77 14.16 16 31 H 0.12 5.35 8.06 -2.91 -0.02 5.33 16 32 H 0.13 4.51 7.70 -2.91 -0.02 4.49 16 Total: -1.00 -73.67 273.65 5.17 -68.51 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 1.11 Total: 18.96 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 5.28 Total: -34.07 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -3.25 Total: -96.14 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -73.67 5.17 -68.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.874 kcal (2) G-P(sol) polarization free energy of solvation -73.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds