Wall clock time and date at job start Mon Mar 30 2020 03:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46962 * 2 1 4 4 C 1.36123 * 126.28476 * 90.02534 * 3 2 1 5 5 C 1.50700 * 124.91199 * 359.93022 * 4 3 2 6 6 N 1.30059 * 110.16899 * 179.97438 * 4 3 2 7 7 C 1.35940 * 109.54621 * 359.97438 * 6 4 3 8 8 C 1.39143 * 133.45080 * 180.02562 * 7 6 4 9 9 C 1.40324 * 119.41751 * 179.97438 * 8 7 6 10 10 C 1.41321 * 120.00988 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00135 * 154.38855 * 10 9 8 12 12 C 1.39879 * 119.99617 * 334.38931 * 10 9 8 13 13 N 1.30881 * 120.00295 * 343.15711 * 12 10 9 14 14 Si 1.86806 * 119.99562 * 163.16126 * 12 10 9 15 15 H 1.48494 * 109.47084 * 60.00065 * 14 12 10 16 16 H 1.48505 * 109.46959 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47205 * 299.99674 * 14 12 10 18 18 C 1.41123 * 119.97854 * 0.02562 * 9 8 7 19 19 C 1.36110 * 120.36567 * 359.97438 * 18 9 8 20 20 C 1.37747 * 126.28988 * 269.71686 * 3 2 1 21 21 H 1.09004 * 109.46808 * 300.00017 * 1 2 3 22 22 H 1.08997 * 109.47168 * 59.99479 * 1 2 3 23 23 H 1.08996 * 109.46743 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47346 * 119.99766 * 2 1 3 25 25 H 1.08998 * 109.47132 * 240.00816 * 2 1 3 26 26 H 1.09000 * 109.46851 * 90.00101 * 5 4 3 27 27 H 1.09006 * 109.46518 * 209.99932 * 5 4 3 28 28 H 1.08997 * 109.47610 * 329.99550 * 5 4 3 29 29 H 1.08004 * 120.29079 * 359.96391 * 8 7 6 30 30 H 0.96996 * 120.00022 * 180.02562 * 13 12 10 31 31 H 1.07999 * 119.81510 * 179.97438 * 18 9 8 32 32 H 1.08000 * 119.85790 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2873 2.1406 1.0973 5 6 2.1245 1.6830 2.5238 6 7 2.7041 3.3185 0.7362 7 6 2.7315 3.3951 -0.6207 8 6 3.0876 4.3995 -1.5155 9 6 3.0022 4.1558 -2.8948 10 6 3.3612 5.1668 -3.8147 11 1 3.6964 4.9004 -4.8062 12 6 3.2823 6.5124 -3.4410 13 7 2.5820 6.8602 -2.3914 14 14 4.1765 7.8131 -4.4401 15 1 3.6717 7.7984 -5.8365 16 1 3.9349 9.1503 -3.8410 17 1 5.6332 7.5248 -4.4372 18 6 2.5577 2.9009 -3.3630 19 6 2.2106 1.9219 -2.4834 20 6 2.2952 2.1481 -1.1103 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 3.0539 1.2292 2.8680 27 1 1.8825 2.5385 3.1544 28 1 1.3195 0.9504 2.5809 29 1 3.4265 5.3582 -1.1516 30 1 2.5270 7.7933 -2.1325 31 1 2.4926 2.7164 -4.4251 32 1 1.8719 0.9644 -2.8507 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082589033.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:13 Heat of formation + Delta-G solvation = 55.719150 kcal Electronic energy + Delta-G solvation = -15512.400107 eV Core-core repulsion = 13051.985500 eV Total energy + Delta-G solvation = -2460.414607 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92626 -36.38143 -34.28336 -33.27571 -30.63576 -29.99174 -28.53531 -27.09595 -24.66508 -23.18213 -20.80381 -20.53843 -18.89609 -17.32496 -16.15642 -15.77009 -14.91506 -14.67544 -14.08884 -13.69217 -13.19714 -12.82397 -12.61708 -12.50387 -12.32370 -12.12383 -11.80470 -11.66855 -11.22317 -11.05468 -11.00823 -10.64406 -10.13547 -9.87462 -9.84767 -9.24995 -8.96198 -8.69556 -7.07194 -6.78553 -6.58504 -4.18984 2.31961 2.89161 3.15772 3.17822 3.28335 3.48387 3.90031 4.04692 4.75595 4.89748 4.97409 5.21372 5.27397 5.40094 5.65337 5.70572 5.77938 5.78800 5.87763 6.00694 6.13277 6.24725 6.59609 6.89836 6.95670 7.04259 7.28801 7.50726 7.72232 7.95165 8.11699 8.16628 8.34236 8.58428 8.97357 9.01553 9.14846 10.35995 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043829 B = 0.007004 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.694600 B = 3996.972078 C = 4440.475898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.495 5.495 4 C 0.244 3.756 5 C -0.066 4.066 6 N -0.506 5.506 7 C 0.073 3.927 8 C -0.137 4.137 9 C 0.095 3.905 10 C -0.466 4.466 11 H 0.076 0.924 12 C 0.075 3.925 13 N -0.795 5.795 14 Si 0.906 3.094 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.160 4.160 19 C -0.108 4.108 20 C -0.040 4.040 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.125 0.875 30 H 0.279 0.721 31 H 0.103 0.897 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.253 -9.895 4.611 11.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.191 5.191 4 C -0.021 4.021 5 C -0.125 4.125 6 N -0.229 5.229 7 C -0.042 4.042 8 C -0.160 4.160 9 C 0.090 3.910 10 C -0.496 4.496 11 H 0.095 0.905 12 C -0.142 4.142 13 N -0.421 5.421 14 Si 0.731 3.269 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.180 4.180 19 C -0.129 4.129 20 C -0.143 4.143 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.143 0.857 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.144 -9.130 5.233 10.739 hybrid contribution -0.020 -0.086 -1.010 1.014 sum -2.164 -9.216 4.223 10.366 Atomic orbital electron populations 1.22174 0.95419 1.01936 1.03134 1.21437 0.94713 0.81627 1.03009 1.44747 1.57077 1.11802 1.05481 1.23178 1.00609 0.88130 0.90155 1.20163 1.02049 1.01880 0.88422 1.70323 1.22559 1.17185 1.12809 1.19021 1.02896 0.93594 0.88669 1.20415 1.07043 0.97759 0.90759 1.17319 0.90377 0.91350 0.91910 1.19353 1.40421 0.90131 0.99735 0.90544 1.25839 0.93395 0.99872 0.95105 1.69847 1.29729 1.19257 1.23249 0.86413 0.80934 0.79208 0.80347 1.19219 1.20474 1.18957 1.20763 1.04910 0.95046 0.97277 1.19150 1.06088 0.98609 0.89031 1.18600 1.13649 0.93556 0.88516 0.92278 0.91850 0.91515 0.90260 0.90206 0.90706 0.89571 0.91409 0.85699 0.90963 0.87886 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.24 37.16 0.38 -1.65 16 2 C 0.12 1.58 6.43 -4.04 -0.03 1.55 16 3 N -0.49 -9.62 2.80 -110.94 -0.31 -9.93 16 4 C 0.24 4.86 7.85 -154.79 -1.22 3.64 16 5 C -0.07 -0.89 9.95 36.01 0.36 -0.53 16 6 N -0.51 -12.52 11.28 -8.24 -0.09 -12.61 16 7 C 0.07 1.95 7.21 -84.71 -0.61 1.34 16 8 C -0.14 -3.90 8.73 -38.46 -0.34 -4.24 16 9 C 0.09 2.60 5.57 -106.85 -0.59 2.00 16 10 C -0.47 -12.61 9.04 -37.80 -0.34 -12.95 16 11 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 12 C 0.07 1.96 5.14 -17.34 -0.09 1.87 16 13 N -0.79 -21.73 10.96 55.54 0.61 -21.13 16 14 Si 0.91 19.33 29.59 -169.99 -5.03 14.30 16 15 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 18 C -0.16 -3.91 9.71 -39.25 -0.38 -4.29 16 19 C -0.11 -2.44 9.96 -39.91 -0.40 -2.84 16 20 C -0.04 -0.94 6.88 -83.76 -0.58 -1.51 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.86 7.61 -51.93 -0.40 0.46 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 0.72 7.64 -51.93 -0.40 0.32 16 29 H 0.13 3.75 6.19 -52.48 -0.32 3.42 16 30 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 31 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 32 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 275.25 15.07 4.15 4.15 Total: -1.00 -31.82 275.25 -8.55 -40.37 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.05 Total: 2.46 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -3.83 Total: -17.60 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.21 Total: -43.67 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.82 -8.55 -40.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589033.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.090 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds