Wall clock time and date at job start Mon Mar 30 2020 03:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46962 * 2 1 4 4 C 1.36123 * 126.28476 * 90.02534 * 3 2 1 5 5 C 1.50700 * 124.91199 * 359.93022 * 4 3 2 6 6 N 1.30059 * 110.16899 * 179.97438 * 4 3 2 7 7 C 1.35940 * 109.54621 * 359.97438 * 6 4 3 8 8 C 1.39143 * 133.45080 * 180.02562 * 7 6 4 9 9 C 1.40324 * 119.41751 * 179.97438 * 8 7 6 10 10 C 1.41321 * 120.00988 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00135 * 154.38855 * 10 9 8 12 12 C 1.39879 * 119.99617 * 334.38931 * 10 9 8 13 13 N 1.30881 * 120.00295 * 343.15711 * 12 10 9 14 14 Si 1.86806 * 119.99562 * 163.16126 * 12 10 9 15 15 H 1.48494 * 109.47084 * 60.00065 * 14 12 10 16 16 H 1.48505 * 109.46959 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47205 * 299.99674 * 14 12 10 18 18 C 1.41123 * 119.97854 * 0.02562 * 9 8 7 19 19 C 1.36110 * 120.36567 * 359.97438 * 18 9 8 20 20 C 1.37747 * 126.28988 * 269.71686 * 3 2 1 21 21 H 1.09004 * 109.46808 * 300.00017 * 1 2 3 22 22 H 1.08997 * 109.47168 * 59.99479 * 1 2 3 23 23 H 1.08996 * 109.46743 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47346 * 119.99766 * 2 1 3 25 25 H 1.08998 * 109.47132 * 240.00816 * 2 1 3 26 26 H 1.09000 * 109.46851 * 90.00101 * 5 4 3 27 27 H 1.09006 * 109.46518 * 209.99932 * 5 4 3 28 28 H 1.08997 * 109.47610 * 329.99550 * 5 4 3 29 29 H 1.08004 * 120.29079 * 359.96391 * 8 7 6 30 30 H 0.96996 * 120.00022 * 180.02562 * 13 12 10 31 31 H 1.07999 * 119.81510 * 179.97438 * 18 9 8 32 32 H 1.08000 * 119.85790 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2873 2.1406 1.0973 5 6 2.1245 1.6830 2.5238 6 7 2.7041 3.3185 0.7362 7 6 2.7315 3.3951 -0.6207 8 6 3.0876 4.3995 -1.5155 9 6 3.0022 4.1558 -2.8948 10 6 3.3612 5.1668 -3.8147 11 1 3.6964 4.9004 -4.8062 12 6 3.2823 6.5124 -3.4410 13 7 2.5820 6.8602 -2.3914 14 14 4.1765 7.8131 -4.4401 15 1 3.6717 7.7984 -5.8365 16 1 3.9349 9.1503 -3.8410 17 1 5.6332 7.5248 -4.4372 18 6 2.5577 2.9009 -3.3630 19 6 2.2106 1.9219 -2.4834 20 6 2.2952 2.1481 -1.1103 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 3.0539 1.2292 2.8680 27 1 1.8825 2.5385 3.1544 28 1 1.3195 0.9504 2.5809 29 1 3.4265 5.3582 -1.1516 30 1 2.5270 7.7933 -2.1325 31 1 2.4926 2.7164 -4.4251 32 1 1.8719 0.9644 -2.8507 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082589033.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:13 Heat of formation + Delta-G solvation = 36.678282 kcal Electronic energy + Delta-G solvation = -15513.225781 eV Core-core repulsion = 13051.985500 eV Total energy + Delta-G solvation = -2461.240281 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.61087 -38.21992 -35.69263 -35.19001 -32.15119 -31.48489 -30.23414 -28.83058 -26.46669 -24.43609 -22.57386 -22.37916 -20.44290 -19.21782 -17.72812 -17.57388 -16.57652 -16.27707 -15.57044 -15.16802 -14.81225 -14.35693 -14.00524 -13.95189 -13.73018 -13.46306 -13.30092 -12.95139 -12.88380 -12.75204 -12.38399 -12.16525 -11.91952 -11.74712 -11.67174 -11.02586 -10.78046 -10.50661 -8.95583 -8.66109 -8.52341 -6.23338 0.54535 1.03065 1.39163 1.51602 1.55487 2.03647 2.17408 2.24800 2.80979 3.59631 3.74002 3.86846 3.93729 4.20379 4.37449 4.42862 4.52772 4.74481 4.77558 4.82237 4.85015 4.93889 5.11481 5.14496 5.26373 5.29818 5.33246 5.56244 5.88386 6.03280 6.17173 6.23732 6.59648 6.72851 6.96587 7.05023 7.37623 8.43063 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043829 B = 0.007004 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.694600 B = 3996.972078 C = 4440.475898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.103 3.897 3 N -0.489 5.489 4 C 0.260 3.740 5 C -0.065 4.065 6 N -0.565 5.565 7 C 0.043 3.957 8 C -0.179 4.179 9 C 0.069 3.931 10 C -0.499 4.499 11 H 0.084 0.916 12 C 0.028 3.972 13 N -0.835 5.835 14 Si 0.984 3.016 15 H -0.253 1.253 16 H -0.273 1.273 17 H -0.262 1.262 18 C -0.176 4.176 19 C -0.093 4.093 20 C -0.049 4.049 21 H 0.058 0.942 22 H 0.036 0.964 23 H 0.105 0.895 24 H 0.120 0.880 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.283 0.717 31 H 0.123 0.877 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 -12.620 5.138 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.017 4.017 3 N -0.183 5.183 4 C -0.005 4.005 5 C -0.123 4.123 6 N -0.289 5.289 7 C -0.072 4.072 8 C -0.202 4.202 9 C 0.065 3.935 10 C -0.529 4.529 11 H 0.102 0.898 12 C -0.185 4.185 13 N -0.462 5.462 14 Si 0.805 3.195 15 H -0.177 1.177 16 H -0.198 1.198 17 H -0.186 1.186 18 C -0.196 4.196 19 C -0.114 4.114 20 C -0.155 4.155 21 H 0.078 0.922 22 H 0.055 0.945 23 H 0.124 0.876 24 H 0.138 0.862 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.748 -11.920 5.762 13.522 hybrid contribution 0.086 0.554 -1.002 1.149 sum -2.662 -11.366 4.760 12.607 Atomic orbital electron populations 1.22143 0.94000 1.04064 1.01841 1.21991 0.95812 0.78375 1.05563 1.45134 1.55783 1.13597 1.03780 1.24412 0.96668 0.86707 0.92735 1.20475 1.04855 1.03057 0.83879 1.70293 1.26126 1.20510 1.12006 1.19272 1.03326 0.94680 0.89928 1.20230 1.10547 0.97448 0.92007 1.17681 0.90975 0.93057 0.91799 1.19703 1.41810 0.91166 1.00242 0.89805 1.26817 0.93536 1.02017 0.96148 1.69972 1.31219 1.19840 1.25169 0.85235 0.79306 0.75995 0.78999 1.17731 1.19786 1.18598 1.20996 1.05413 0.94467 0.98748 1.19504 1.03835 0.99617 0.88454 1.18788 1.13267 0.93375 0.90028 0.92249 0.94512 0.87633 0.86237 0.89244 0.88034 0.89280 0.87556 0.89198 0.90696 0.85871 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.24 71.98 0.74 -2.48 16 2 C 0.10 2.34 6.43 86.38 0.56 2.89 16 3 N -0.49 -17.83 2.80 -504.91 -1.41 -19.25 16 4 C 0.26 9.91 7.85 137.91 1.08 11.00 16 5 C -0.06 -1.47 9.95 71.24 0.71 -0.77 16 6 N -0.57 -28.65 11.28 -179.98 -2.03 -30.68 16 7 C 0.04 2.41 7.21 39.37 0.28 2.70 16 8 C -0.18 -10.93 8.73 22.99 0.20 -10.73 16 9 C 0.07 3.98 5.57 -21.31 -0.12 3.86 16 10 C -0.50 -28.28 9.04 23.43 0.21 -28.07 16 11 H 0.08 4.42 7.90 -2.91 -0.02 4.40 16 12 C 0.03 1.53 5.14 85.23 0.44 1.97 16 13 N -0.84 -48.52 10.96 21.82 0.24 -48.28 16 14 Si 0.98 40.89 29.59 68.60 2.03 42.92 16 15 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 16 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 18 C -0.18 -8.75 9.71 22.48 0.22 -8.53 16 19 C -0.09 -4.15 9.96 22.06 0.22 -3.93 16 20 C -0.05 -2.31 6.88 39.15 0.27 -2.04 16 21 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 22 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.12 1.82 7.61 -2.39 -0.02 1.80 16 25 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.11 1.64 7.64 -2.39 -0.02 1.63 16 29 H 0.09 5.93 6.19 -2.91 -0.02 5.91 16 30 H 0.28 15.06 8.30 -92.71 -0.77 14.29 16 31 H 0.12 5.42 8.06 -2.91 -0.02 5.40 16 32 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -76.31 275.25 4.74 -71.57 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 1.11 Total: 17.85 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 4.81 Total: -34.13 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -3.20 Total: -98.21 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -76.31 4.74 -71.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589033.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.247 kcal (2) G-P(sol) polarization free energy of solvation -76.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds