Wall clock time and date at job start Mon Mar 30 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36042 * 126.35034 * 2 1 4 4 N 1.30113 * 110.09722 * 179.72346 * 3 2 1 5 5 C 1.35781 * 109.64490 * 0.40839 * 4 3 2 6 6 C 1.39745 * 133.60116 * 179.88472 * 5 4 3 7 7 C 1.36596 * 119.88649 * 179.68535 * 6 5 4 8 8 C 1.50699 * 119.66634 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46912 * 89.99845 * 8 7 6 10 10 C 1.50709 * 109.46910 * 180.02562 * 9 8 7 11 11 H 1.07995 * 119.99723 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99649 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99414 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00244 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46875 * 90.00020 * 14 12 10 16 16 H 1.48492 * 109.47513 * 210.00045 * 14 12 10 17 17 H 1.48498 * 109.47258 * 330.00570 * 14 12 10 18 18 C 1.38778 * 120.67012 * 0.02562 * 7 6 5 19 19 C 1.37853 * 120.45089 * 359.97438 * 18 7 6 20 20 C 1.38056 * 126.34699 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47218 * 270.03392 * 1 2 3 22 22 H 1.08999 * 109.46687 * 30.03107 * 1 2 3 23 23 H 1.08998 * 109.46781 * 150.02914 * 1 2 3 24 24 H 1.07996 * 124.94996 * 359.95089 * 3 2 1 25 25 H 1.08000 * 120.05505 * 359.66078 * 6 5 4 26 26 H 1.09000 * 109.47509 * 210.00517 * 8 7 6 27 27 H 1.09006 * 109.47087 * 330.00268 * 8 7 6 28 28 H 1.08992 * 109.47385 * 300.00007 * 9 8 7 29 29 H 1.09003 * 109.47146 * 60.00761 * 9 8 7 30 30 H 0.97007 * 119.99684 * 180.02562 * 13 12 10 31 31 H 1.07997 * 119.77326 * 179.97438 * 18 7 6 32 32 H 1.08001 * 120.15247 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0957 0.0000 4 7 3.5205 0.7315 0.0059 5 6 3.6008 -0.6239 0.0010 6 6 4.6681 -1.5260 0.0016 7 6 4.4233 -2.8699 0.0020 8 6 5.5779 -3.8383 0.0021 9 6 5.9688 -4.1656 1.4447 10 6 7.1239 -5.1337 1.4448 11 1 7.5380 -5.4803 0.5095 12 6 7.6520 -5.5766 2.6389 13 7 8.6602 -6.4209 2.6390 14 14 6.9362 -4.9765 4.2565 15 1 5.8467 -5.8902 4.6851 16 1 8.0007 -4.9558 5.2916 17 1 6.3917 -3.6064 4.0789 18 6 3.1221 -3.3525 0.0012 19 6 2.0539 -2.4812 0.0005 20 6 2.2832 -1.1120 0.0005 21 1 -0.3633 0.0006 1.0276 22 1 -0.3633 0.8897 -0.5143 23 1 -0.3633 -0.8902 -0.5134 24 1 1.9251 2.1186 -0.0008 25 1 5.6846 -1.1613 0.0014 26 1 5.2844 -4.7538 -0.5115 27 1 6.4282 -3.3900 -0.5119 28 1 6.2624 -3.2502 1.9582 29 1 5.1186 -4.6140 1.9587 30 1 9.0315 -6.7329 3.4791 31 1 2.9453 -4.4178 0.0011 32 1 1.0432 -2.8620 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082589040.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:48 Heat of formation + Delta-G solvation = 62.735943 kcal Electronic energy + Delta-G solvation = -14987.999858 eV Core-core repulsion = 12527.889522 eV Total energy + Delta-G solvation = -2460.110336 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.97556 -37.69581 -34.20464 -33.68112 -31.82864 -29.76047 -28.83483 -27.11053 -25.03304 -22.90343 -21.59243 -20.57307 -19.99661 -17.07516 -16.98974 -16.55357 -15.79964 -15.11852 -14.21641 -14.09216 -13.88403 -13.49000 -13.38076 -12.86219 -12.66998 -12.63508 -11.80595 -11.78963 -11.37608 -10.95997 -10.88618 -10.32570 -9.98342 -9.89890 -9.73524 -9.63809 -9.13644 -8.49188 -8.02679 -7.78983 -6.00192 -3.97893 1.16700 1.77858 2.60998 2.91546 3.35043 3.42583 3.49113 4.13349 4.37332 4.47566 4.50308 4.60315 4.86108 5.06378 5.17869 5.32495 5.34608 5.57604 5.68739 5.74651 5.95491 6.24615 6.37496 6.53900 6.59522 6.72657 6.86046 7.02447 7.13504 7.21780 7.35887 7.51582 7.83730 7.97549 8.57794 9.04971 9.62859 11.13247 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042152 B = 0.005535 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.110824 B = 5057.814001 C = 5110.847288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.502 5.502 3 C 0.246 3.754 4 N -0.496 5.496 5 C 0.046 3.954 6 C -0.067 4.067 7 C -0.072 4.072 8 C -0.067 4.067 9 C -0.007 4.007 10 C -0.520 4.520 11 H 0.073 0.927 12 C 0.067 3.933 13 N -0.904 5.904 14 Si 0.877 3.123 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.264 1.264 18 C -0.090 4.090 19 C -0.119 4.119 20 C 0.035 3.965 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.209 0.791 25 H 0.129 0.871 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.018 0.982 29 H 0.012 0.988 30 H 0.262 0.738 31 H 0.131 0.869 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.517 12.672 -5.550 23.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.194 5.194 3 C -0.039 4.039 4 N -0.215 5.215 5 C -0.072 4.072 6 C -0.087 4.087 7 C -0.074 4.074 8 C -0.104 4.104 9 C -0.045 4.045 10 C -0.558 4.558 11 H 0.091 0.909 12 C -0.134 4.134 13 N -0.544 5.544 14 Si 0.704 3.296 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.189 1.189 18 C -0.109 4.109 19 C -0.140 4.140 20 C -0.073 4.073 21 H 0.089 0.911 22 H 0.103 0.897 23 H 0.100 0.900 24 H 0.225 0.775 25 H 0.147 0.853 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.824 13.103 -5.426 22.778 hybrid contribution -1.179 -0.166 1.013 1.563 sum -19.003 12.937 -4.412 23.408 Atomic orbital electron populations 1.21890 0.76631 1.04269 1.03156 1.45200 1.06898 1.05670 1.61635 1.25224 0.85378 0.93152 1.00194 1.70400 1.18126 1.11462 1.21474 1.19033 0.92287 0.89852 1.05994 1.19960 0.97449 0.91027 1.00220 1.19876 0.95641 0.93985 0.97919 1.20609 0.93491 0.95970 1.00379 1.19568 0.96558 0.96856 0.91472 1.21165 1.14759 1.25364 0.94512 0.90888 1.25000 0.94662 0.94598 0.99097 1.69916 1.24887 1.32723 1.26830 0.86815 0.78892 0.80155 0.83722 1.20329 1.21400 1.18881 1.20931 0.91429 0.99457 0.99106 1.19846 0.99264 0.88707 1.06150 1.18859 0.91118 0.89347 1.07952 0.91050 0.89665 0.90031 0.77459 0.85328 0.91517 0.91504 0.96414 0.96936 0.92780 0.85110 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 11.18 59.85 0.67 1.19 16 2 N -0.50 -5.80 3.21 -123.19 -0.39 -6.19 16 3 C 0.25 2.90 12.50 -89.78 -1.12 1.78 16 4 N -0.50 -8.11 11.27 -12.05 -0.14 -8.24 16 5 C 0.05 0.80 7.23 -84.70 -0.61 0.19 16 6 C -0.07 -1.22 9.67 -39.61 -0.38 -1.61 16 7 C -0.07 -1.30 5.10 -105.02 -0.54 -1.84 16 8 C -0.07 -1.36 5.26 -27.88 -0.15 -1.50 16 9 C -0.01 -0.17 4.02 -27.88 -0.11 -0.29 16 10 C -0.52 -15.00 9.66 -34.43 -0.33 -15.34 16 11 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -28.26 13.96 55.43 0.77 -27.48 16 14 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 18 C -0.09 -1.42 9.67 -39.52 -0.38 -1.80 16 19 C -0.12 -1.68 10.05 -39.50 -0.40 -2.08 16 20 C 0.03 0.52 6.87 -83.99 -0.58 -0.05 16 21 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 22 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 23 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.21 1.37 8.06 -52.49 -0.42 0.95 16 25 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 26 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 27 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 29 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 277.22 15.07 4.18 4.18 Total: -1.00 -34.74 277.22 -8.43 -43.17 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -4.15 Total: -3.62 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -4.03 Total: -19.44 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.24 Total: -41.92 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -34.74 -8.43 -43.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589040.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.905 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds