Wall clock time and date at job start Mon Mar 30 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36042 * 126.35034 * 2 1 4 4 N 1.30113 * 110.09722 * 179.72346 * 3 2 1 5 5 C 1.35781 * 109.64490 * 0.40839 * 4 3 2 6 6 C 1.39745 * 133.60116 * 179.88472 * 5 4 3 7 7 C 1.36596 * 119.88649 * 179.68535 * 6 5 4 8 8 C 1.50699 * 119.66634 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46912 * 89.99845 * 8 7 6 10 10 C 1.50709 * 109.46910 * 180.02562 * 9 8 7 11 11 H 1.07995 * 119.99723 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99649 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99414 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00244 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46875 * 90.00020 * 14 12 10 16 16 H 1.48492 * 109.47513 * 210.00045 * 14 12 10 17 17 H 1.48498 * 109.47258 * 330.00570 * 14 12 10 18 18 C 1.38778 * 120.67012 * 0.02562 * 7 6 5 19 19 C 1.37853 * 120.45089 * 359.97438 * 18 7 6 20 20 C 1.38056 * 126.34699 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47218 * 270.03392 * 1 2 3 22 22 H 1.08999 * 109.46687 * 30.03107 * 1 2 3 23 23 H 1.08998 * 109.46781 * 150.02914 * 1 2 3 24 24 H 1.07996 * 124.94996 * 359.95089 * 3 2 1 25 25 H 1.08000 * 120.05505 * 359.66078 * 6 5 4 26 26 H 1.09000 * 109.47509 * 210.00517 * 8 7 6 27 27 H 1.09006 * 109.47087 * 330.00268 * 8 7 6 28 28 H 1.08992 * 109.47385 * 300.00007 * 9 8 7 29 29 H 1.09003 * 109.47146 * 60.00761 * 9 8 7 30 30 H 0.97007 * 119.99684 * 180.02562 * 13 12 10 31 31 H 1.07997 * 119.77326 * 179.97438 * 18 7 6 32 32 H 1.08001 * 120.15247 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0957 0.0000 4 7 3.5205 0.7315 0.0059 5 6 3.6008 -0.6239 0.0010 6 6 4.6681 -1.5260 0.0016 7 6 4.4233 -2.8699 0.0020 8 6 5.5779 -3.8383 0.0021 9 6 5.9688 -4.1656 1.4447 10 6 7.1239 -5.1337 1.4448 11 1 7.5380 -5.4803 0.5095 12 6 7.6520 -5.5766 2.6389 13 7 8.6602 -6.4209 2.6390 14 14 6.9362 -4.9765 4.2565 15 1 5.8467 -5.8902 4.6851 16 1 8.0007 -4.9558 5.2916 17 1 6.3917 -3.6064 4.0789 18 6 3.1221 -3.3525 0.0012 19 6 2.0539 -2.4812 0.0005 20 6 2.2832 -1.1120 0.0005 21 1 -0.3633 0.0006 1.0276 22 1 -0.3633 0.8897 -0.5143 23 1 -0.3633 -0.8902 -0.5134 24 1 1.9251 2.1186 -0.0008 25 1 5.6846 -1.1613 0.0014 26 1 5.2844 -4.7538 -0.5115 27 1 6.4282 -3.3900 -0.5119 28 1 6.2624 -3.2502 1.9582 29 1 5.1186 -4.6140 1.9587 30 1 9.0315 -6.7329 3.4791 31 1 2.9453 -4.4178 0.0011 32 1 1.0432 -2.8620 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082589040.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:48 Heat of formation + Delta-G solvation = 41.832444 kcal Electronic energy + Delta-G solvation = -14988.906302 eV Core-core repulsion = 12527.889522 eV Total energy + Delta-G solvation = -2461.016780 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.01039 -38.94845 -35.59745 -35.10945 -33.70507 -31.07806 -30.21767 -27.99570 -26.64308 -24.07492 -23.19767 -21.63245 -21.52173 -19.00053 -18.01343 -17.83250 -16.68091 -16.41162 -16.27130 -15.36163 -14.95951 -14.84661 -14.55799 -14.25225 -14.12613 -13.63103 -13.41036 -13.20761 -12.88463 -12.55740 -12.35912 -11.87112 -11.68669 -11.61631 -11.31476 -11.19469 -10.89205 -10.75873 -9.20158 -8.96787 -8.29406 -6.32783 0.05207 0.54866 1.33613 1.36522 1.49157 1.79098 1.90238 2.35909 2.89221 3.06013 3.37325 3.70222 3.95433 4.06221 4.14866 4.36457 4.49047 4.51234 4.63137 4.66434 4.75441 4.76478 4.88661 5.03911 5.22523 5.40060 5.42432 5.47613 5.57681 5.65366 5.85186 5.97448 6.28834 6.30665 6.74667 6.94340 7.31827 8.87393 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042152 B = 0.005535 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.110824 B = 5057.814001 C = 5110.847288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.496 5.496 3 C 0.267 3.733 4 N -0.549 5.549 5 C 0.018 3.982 6 C -0.093 4.093 7 C -0.084 4.084 8 C -0.057 4.057 9 C 0.000 4.000 10 C -0.531 4.531 11 H 0.037 0.963 12 C 0.008 3.992 13 N -0.950 5.950 14 Si 0.946 3.054 15 H -0.261 1.261 16 H -0.282 1.282 17 H -0.257 1.257 18 C -0.105 4.105 19 C -0.101 4.101 20 C 0.026 3.974 21 H 0.085 0.915 22 H 0.118 0.882 23 H 0.090 0.910 24 H 0.260 0.740 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.009 0.991 29 H 0.020 0.980 30 H 0.267 0.733 31 H 0.146 0.854 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.424 14.349 -4.876 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.186 5.186 3 C -0.018 4.018 4 N -0.270 5.270 5 C -0.099 4.099 6 C -0.112 4.112 7 C -0.086 4.086 8 C -0.095 4.095 9 C -0.038 4.038 10 C -0.569 4.569 11 H 0.056 0.944 12 C -0.189 4.189 13 N -0.590 5.590 14 Si 0.769 3.231 15 H -0.186 1.186 16 H -0.207 1.207 17 H -0.181 1.181 18 C -0.125 4.125 19 C -0.121 4.121 20 C -0.083 4.083 21 H 0.103 0.897 22 H 0.137 0.863 23 H 0.109 0.891 24 H 0.276 0.724 25 H 0.129 0.871 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.778 14.786 -4.766 26.751 hybrid contribution -0.035 -0.579 0.708 0.915 sum -21.814 14.207 -4.059 26.346 Atomic orbital electron populations 1.22331 0.73098 1.06505 1.04749 1.45560 1.08828 1.04251 1.59952 1.26242 0.84211 0.95062 0.96294 1.70363 1.21064 1.11040 1.24489 1.19211 0.93254 0.90740 1.06726 1.19915 0.97391 0.91716 1.02216 1.19622 0.95847 0.93245 0.99913 1.20380 0.94482 0.96950 0.97661 1.19454 0.94955 0.95088 0.94284 1.21505 1.16053 1.26047 0.93330 0.94437 1.25930 0.95010 0.94701 1.03223 1.70057 1.26549 1.34313 1.28117 0.85719 0.78559 0.80058 0.78721 1.18620 1.20740 1.18088 1.21089 0.90777 1.00663 0.99928 1.20174 1.00472 0.88083 1.03404 1.19066 0.90961 0.90651 1.07641 0.89693 0.86315 0.89108 0.72392 0.87052 0.91010 0.92578 0.97258 0.96121 0.92442 0.83581 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 11.18 127.77 1.43 1.96 16 2 N -0.50 -9.48 3.21 -543.65 -1.74 -11.22 16 3 C 0.27 5.38 12.50 180.05 2.25 7.63 16 4 N -0.55 -17.40 11.27 -192.02 -2.16 -19.56 16 5 C 0.02 0.63 7.23 39.45 0.29 0.91 16 6 C -0.09 -3.51 9.67 22.25 0.22 -3.30 16 7 C -0.08 -3.08 5.10 -20.12 -0.10 -3.19 16 8 C -0.06 -2.40 5.26 29.85 0.16 -2.24 16 9 C 0.00 -0.02 4.02 29.85 0.12 0.10 16 10 C -0.53 -31.73 9.66 25.60 0.25 -31.48 16 11 H 0.04 2.43 7.99 -2.91 -0.02 2.40 16 12 C 0.01 0.50 5.47 84.66 0.46 0.96 16 13 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 14 Si 0.95 46.21 27.47 68.60 1.88 48.09 16 15 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 18 C -0.11 -3.17 9.67 22.31 0.22 -2.96 16 19 C -0.10 -2.56 10.05 22.32 0.22 -2.33 16 20 C 0.03 0.72 6.87 38.86 0.27 0.99 16 21 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 22 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 23 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.26 2.05 8.06 -2.91 -0.02 2.02 16 25 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 26 H 0.07 2.86 8.08 -2.39 -0.02 2.84 16 27 H 0.06 2.39 8.07 -2.38 -0.02 2.37 16 28 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 29 H 0.02 0.98 7.57 -2.39 -0.02 0.97 16 30 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 31 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 32 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -78.78 277.22 5.09 -73.68 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 1.04 Total: 2.54 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 5.77 Total: -32.95 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -3.61 Total: -91.37 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.88 Total: 48.09 kcal Total: -78.78 5.09 -73.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589040.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.516 kcal (2) G-P(sol) polarization free energy of solvation -78.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds