Wall clock time and date at job start Mon Mar 30 2020 03:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36041 * 126.35219 * 264.69048 * 3 2 1 5 5 N 1.30107 * 110.09731 * 179.81385 * 4 3 2 6 6 C 1.35782 * 109.64522 * 0.45723 * 5 4 3 7 7 C 1.39745 * 133.59996 * 179.71819 * 6 5 4 8 8 C 1.36595 * 119.88569 * 180.02562 * 7 6 5 9 9 C 1.50702 * 119.66917 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47430 * 89.99645 * 9 8 7 11 11 H 1.08010 * 119.99891 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00177 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00363 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 120.00093 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46895 * 89.99915 * 14 12 10 16 16 H 1.48496 * 109.47466 * 210.00111 * 14 12 10 17 17 H 1.48506 * 109.47029 * 330.00486 * 14 12 10 18 18 C 1.38780 * 120.67052 * 0.02562 * 8 7 6 19 19 C 1.37853 * 120.45199 * 359.97098 * 18 8 7 20 20 C 1.38055 * 126.34546 * 85.00488 * 3 2 1 21 21 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 26 26 H 1.07999 * 124.94527 * 359.97438 * 4 3 2 27 27 H 1.08000 * 120.05764 * 359.97438 * 7 6 5 28 28 H 1.08999 * 109.47474 * 210.00230 * 9 8 7 29 29 H 1.09004 * 109.46820 * 329.99749 * 9 8 7 30 30 H 0.96992 * 120.00411 * 179.97438 * 13 12 10 31 31 H 1.08007 * 119.77555 * 179.97438 * 18 8 7 32 32 H 1.07998 * 120.16109 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3826 2.1077 -1.0910 5 7 2.7634 3.2979 -0.7287 6 6 2.6789 3.4130 0.6216 7 6 2.9605 4.4454 1.5203 8 6 2.7691 4.2535 2.8591 9 6 3.0738 5.3703 3.8239 10 6 1.8407 6.2135 4.0221 11 1 0.9273 5.9652 3.5017 12 6 1.8783 7.3019 4.8676 13 7 2.9905 7.6046 5.5008 14 14 0.3498 8.3476 5.1127 15 1 -0.4427 7.8076 6.2465 16 1 0.7495 9.7465 5.4099 17 1 -0.4725 8.3197 3.8764 18 6 2.2967 3.0403 3.3399 19 6 2.0121 2.0079 2.4719 20 6 2.1997 2.1849 1.1077 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 2.3568 1.7495 -2.1095 27 1 3.3297 5.3931 1.1571 28 1 3.3840 4.9497 4.7804 29 1 3.8762 5.9889 3.4218 30 1 3.0171 8.3705 6.0953 31 1 2.1510 2.9042 4.4014 32 1 1.6443 1.0659 2.8512 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082589174.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:12 Heat of formation + Delta-G solvation = 60.055995 kcal Electronic energy + Delta-G solvation = -15134.098330 eV Core-core repulsion = 12673.871782 eV Total energy + Delta-G solvation = -2460.226548 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.69897 -37.22305 -34.84385 -33.09106 -31.12715 -29.96144 -28.90851 -26.74135 -23.89334 -23.27095 -22.30312 -20.32478 -20.07830 -16.90047 -16.52642 -16.23669 -15.24636 -14.94471 -14.44024 -14.30777 -13.68926 -13.31621 -13.11062 -12.86737 -12.40142 -12.22012 -11.66158 -11.51425 -11.26599 -10.96411 -10.80593 -10.56869 -10.44711 -9.99985 -9.64664 -9.41662 -9.30867 -8.37617 -7.67174 -7.40650 -5.99241 -4.02730 1.51457 2.20421 2.84041 3.22298 3.33931 3.40169 3.45259 4.42919 4.49061 4.61049 4.64764 4.80902 4.84572 5.01857 5.32448 5.35729 5.40248 5.53012 5.76858 5.85141 5.97052 6.09413 6.18674 6.46162 6.75929 6.97631 7.14392 7.20132 7.46085 7.53476 7.66493 7.89382 7.96901 8.28666 8.37977 9.02547 9.60898 11.10505 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039666 B = 0.005820 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.727134 B = 4809.726664 C = 4925.204683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.112 3.888 3 N -0.499 5.499 4 C 0.239 3.761 5 N -0.497 5.497 6 C 0.044 3.956 7 C -0.073 4.073 8 C -0.046 4.046 9 C 0.051 3.949 10 C -0.510 4.510 11 H 0.057 0.943 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.087 4.087 19 C -0.126 4.126 20 C 0.031 3.969 21 H 0.061 0.939 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.204 0.796 27 H 0.124 0.876 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.127 0.873 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 -15.880 -9.739 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.011 4.011 3 N -0.192 5.192 4 C -0.047 4.047 5 N -0.217 5.217 6 C -0.073 4.073 7 C -0.093 4.093 8 C -0.049 4.049 9 C 0.015 3.985 10 C -0.549 4.549 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.106 4.106 19 C -0.147 4.147 20 C -0.076 4.076 21 H 0.080 0.920 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.221 0.779 27 H 0.142 0.858 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.715 -15.213 -10.139 18.482 hybrid contribution -1.202 -0.132 0.584 1.343 sum -3.917 -15.345 -9.555 18.496 Atomic orbital electron populations 1.22185 0.94688 1.02652 1.03395 1.21640 0.95237 0.80237 1.03936 1.45313 1.55172 1.12586 1.06108 1.25094 0.98682 0.87788 0.93088 1.70364 1.22202 1.17250 1.11834 1.19070 1.04382 0.94070 0.89741 1.19945 1.01193 0.96929 0.91240 1.20177 0.94747 0.95624 0.94304 1.18325 0.97431 0.90271 0.92516 1.21089 0.96711 1.10938 1.26124 0.92482 1.24996 0.96144 0.97416 0.95726 1.69952 1.26111 1.28089 1.29245 0.86558 0.83185 0.79574 0.78528 1.20646 1.21171 1.19822 1.20956 0.98174 0.92247 0.99255 1.19812 1.06139 0.99833 0.88929 1.18787 1.06813 0.92596 0.89366 0.91959 0.90926 0.91701 0.89713 0.89226 0.77950 0.85774 0.95209 0.95189 0.92884 0.85513 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.11 0.98 6.88 -4.04 -0.03 0.95 16 3 N -0.50 -6.81 2.81 -115.79 -0.32 -7.13 16 4 C 0.24 3.32 12.49 -89.78 -1.12 2.20 16 5 N -0.50 -9.27 11.27 -12.05 -0.14 -9.40 16 6 C 0.04 0.90 7.23 -84.70 -0.61 0.28 16 7 C -0.07 -1.61 9.67 -39.61 -0.38 -2.00 16 8 C -0.05 -1.04 5.03 -105.01 -0.53 -1.57 16 9 C 0.05 1.34 5.08 -29.04 -0.15 1.19 16 10 C -0.51 -14.49 9.09 -34.44 -0.31 -14.80 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 14 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 C -0.09 -1.70 9.67 -39.52 -0.38 -2.08 16 19 C -0.13 -2.15 10.05 -39.50 -0.40 -2.55 16 20 C 0.03 0.55 6.87 -83.99 -0.58 -0.03 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.52 8.13 -51.93 -0.42 0.10 16 26 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.12 2.75 8.06 -52.49 -0.42 2.33 16 28 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 29 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.13 2.31 8.06 -52.48 -0.42 1.89 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 281.12 15.07 4.24 4.24 Total: -1.00 -33.01 281.12 -8.90 -41.92 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.18 Total: -2.68 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -4.21 Total: -17.83 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.28 Total: -42.45 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.01 -8.90 -41.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589174.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.972 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds