Wall clock time and date at job start Mon Mar 30 2020 03:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36041 * 126.35219 * 264.69048 * 3 2 1 5 5 N 1.30107 * 110.09731 * 179.81385 * 4 3 2 6 6 C 1.35782 * 109.64522 * 0.45723 * 5 4 3 7 7 C 1.39745 * 133.59996 * 179.71819 * 6 5 4 8 8 C 1.36595 * 119.88569 * 180.02562 * 7 6 5 9 9 C 1.50702 * 119.66917 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47430 * 89.99645 * 9 8 7 11 11 H 1.08010 * 119.99891 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00177 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00363 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 120.00093 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46895 * 89.99915 * 14 12 10 16 16 H 1.48496 * 109.47466 * 210.00111 * 14 12 10 17 17 H 1.48506 * 109.47029 * 330.00486 * 14 12 10 18 18 C 1.38780 * 120.67052 * 0.02562 * 8 7 6 19 19 C 1.37853 * 120.45199 * 359.97098 * 18 8 7 20 20 C 1.38055 * 126.34546 * 85.00488 * 3 2 1 21 21 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 26 26 H 1.07999 * 124.94527 * 359.97438 * 4 3 2 27 27 H 1.08000 * 120.05764 * 359.97438 * 7 6 5 28 28 H 1.08999 * 109.47474 * 210.00230 * 9 8 7 29 29 H 1.09004 * 109.46820 * 329.99749 * 9 8 7 30 30 H 0.96992 * 120.00411 * 179.97438 * 13 12 10 31 31 H 1.08007 * 119.77555 * 179.97438 * 18 8 7 32 32 H 1.07998 * 120.16109 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3826 2.1077 -1.0910 5 7 2.7634 3.2979 -0.7287 6 6 2.6789 3.4130 0.6216 7 6 2.9605 4.4454 1.5203 8 6 2.7691 4.2535 2.8591 9 6 3.0738 5.3703 3.8239 10 6 1.8407 6.2135 4.0221 11 1 0.9273 5.9652 3.5017 12 6 1.8783 7.3019 4.8676 13 7 2.9905 7.6046 5.5008 14 14 0.3498 8.3476 5.1127 15 1 -0.4427 7.8076 6.2465 16 1 0.7495 9.7465 5.4099 17 1 -0.4725 8.3197 3.8764 18 6 2.2967 3.0403 3.3399 19 6 2.0121 2.0079 2.4719 20 6 2.1997 2.1849 1.1077 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 2.3568 1.7495 -2.1095 27 1 3.3297 5.3931 1.1571 28 1 3.3840 4.9497 4.7804 29 1 3.8762 5.9889 3.4218 30 1 3.0171 8.3705 6.0953 31 1 2.1510 2.9042 4.4014 32 1 1.6443 1.0659 2.8512 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082589174.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:11 Heat of formation + Delta-G solvation = 41.229953 kcal Electronic energy + Delta-G solvation = -15134.914688 eV Core-core repulsion = 12673.871782 eV Total energy + Delta-G solvation = -2461.042906 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.97716 -38.73876 -35.86164 -35.16277 -32.69987 -31.26248 -30.26330 -28.54427 -25.37988 -24.50595 -23.76856 -21.90473 -21.27393 -18.50369 -18.01306 -17.83869 -16.72445 -16.38887 -16.00253 -15.27110 -15.08709 -14.64702 -14.49075 -14.30885 -13.86087 -13.41609 -13.26027 -12.99877 -12.66361 -12.51600 -12.34647 -12.29477 -12.10786 -11.55282 -11.49018 -11.13026 -10.82158 -10.59116 -9.13127 -8.90686 -8.17957 -6.31892 0.12233 0.67823 1.39439 1.41196 1.52687 1.79831 1.96195 2.40857 3.01996 3.11550 3.45266 3.72554 3.84364 4.15016 4.19301 4.28049 4.43650 4.54498 4.57532 4.61951 4.82092 4.90863 4.96056 5.26067 5.28480 5.32987 5.37348 5.51883 5.61971 5.76174 6.00914 6.07175 6.21978 6.38839 6.79947 7.00935 7.36288 8.90652 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039666 B = 0.005820 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.727134 B = 4809.726664 C = 4925.204683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.103 3.897 3 N -0.490 5.490 4 C 0.268 3.732 5 N -0.550 5.550 6 C 0.022 3.978 7 C -0.100 4.100 8 C -0.066 4.066 9 C 0.061 3.939 10 C -0.529 4.529 11 H 0.051 0.949 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.965 3.035 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.270 1.270 18 C -0.107 4.107 19 C -0.100 4.100 20 C 0.027 3.973 21 H 0.059 0.941 22 H 0.101 0.899 23 H 0.040 0.960 24 H 0.095 0.905 25 H 0.131 0.869 26 H 0.261 0.739 27 H 0.100 0.900 28 H 0.013 0.987 29 H -0.001 1.001 30 H 0.266 0.734 31 H 0.134 0.866 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 -18.824 -11.267 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.181 5.181 4 C -0.018 4.018 5 N -0.270 5.270 6 C -0.095 4.095 7 C -0.120 4.120 8 C -0.068 4.068 9 C 0.024 3.976 10 C -0.567 4.567 11 H 0.069 0.931 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.789 3.211 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.195 1.195 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.082 4.082 21 H 0.078 0.922 22 H 0.120 0.880 23 H 0.059 0.941 24 H 0.114 0.886 25 H 0.149 0.851 26 H 0.276 0.724 27 H 0.118 0.882 28 H 0.031 0.969 29 H 0.017 0.983 30 H 0.075 0.925 31 H 0.152 0.848 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.572 -18.205 -11.673 22.104 hybrid contribution -0.616 0.622 0.886 1.246 sum -5.188 -17.583 -10.787 21.271 Atomic orbital electron populations 1.22171 0.94144 1.04167 1.02082 1.22145 0.95583 0.77365 1.06591 1.45694 1.53849 1.14055 1.04477 1.26200 0.94434 0.86104 0.95040 1.70337 1.25342 1.20353 1.10961 1.19132 1.04868 0.94656 0.90814 1.19773 1.03202 0.97182 0.91806 1.19846 0.97243 0.95947 0.93756 1.18064 0.95878 0.91097 0.92551 1.21370 0.97166 1.11825 1.26289 0.93051 1.25905 0.99503 0.98623 0.95208 1.70074 1.28283 1.28777 1.29829 0.85451 0.79096 0.77798 0.78738 1.19213 1.20381 1.19511 1.20977 0.99519 0.91958 1.00215 1.20089 1.03314 1.00266 0.88387 1.18908 1.06175 0.92477 0.90597 0.92188 0.88017 0.94108 0.88635 0.85145 0.72384 0.88187 0.96908 0.98314 0.92521 0.84784 0.82930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 71.98 0.74 -1.21 16 2 C 0.10 1.23 6.88 86.38 0.59 1.82 16 3 N -0.49 -11.44 2.81 -520.26 -1.46 -12.90 16 4 C 0.27 6.43 12.49 180.06 2.25 8.68 16 5 N -0.55 -19.99 11.27 -192.03 -2.16 -22.15 16 6 C 0.02 0.92 7.23 39.45 0.29 1.20 16 7 C -0.10 -4.69 9.67 22.25 0.22 -4.48 16 8 C -0.07 -3.14 5.03 -20.12 -0.10 -3.24 16 9 C 0.06 3.43 5.08 29.10 0.15 3.58 16 10 C -0.53 -31.46 9.09 25.60 0.23 -31.23 16 11 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 12 C 0.01 0.34 5.46 84.65 0.46 0.80 16 13 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 14 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 C -0.11 -4.26 9.67 22.31 0.22 -4.04 16 19 C -0.10 -3.23 10.05 22.32 0.22 -3.01 16 20 C 0.03 0.90 6.87 38.86 0.27 1.17 16 21 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.13 0.61 8.13 -2.39 -0.02 0.59 16 26 H 0.26 2.91 8.06 -2.91 -0.02 2.89 16 27 H 0.10 4.95 8.06 -2.91 -0.02 4.92 16 28 H 0.01 0.73 8.08 -2.39 -0.02 0.71 16 29 H 0.00 -0.09 8.07 -2.38 -0.02 -0.11 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.13 4.98 8.06 -2.91 -0.02 4.95 16 32 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -76.80 281.12 5.32 -71.48 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: 1.10 Total: 2.92 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 5.53 Total: -29.94 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -3.34 Total: -92.08 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -76.80 5.32 -71.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589174.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.715 kcal (2) G-P(sol) polarization free energy of solvation -76.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds