Wall clock time and date at job start Mon Mar 30 2020 03:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38323 * 125.60381 * 2 1 4 4 C 1.39918 * 125.69123 * 0.02562 * 3 2 1 5 5 H 1.08009 * 119.99592 * 141.35255 * 4 3 2 6 6 C 1.40190 * 120.00459 * 321.34979 * 4 3 2 7 7 N 1.30747 * 119.99853 * 339.56404 * 6 4 3 8 8 Si 1.86801 * 119.99843 * 159.56248 * 6 4 3 9 9 H 1.48497 * 109.47142 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46746 * 120.00138 * 8 6 4 11 11 H 1.48499 * 109.46840 * 239.99825 * 8 6 4 12 12 C 1.39124 * 108.60618 * 180.02562 * 3 2 1 13 13 C 1.50705 * 126.25126 * 180.02562 * 12 3 2 14 14 N 1.46901 * 109.46907 * 89.99595 * 13 12 3 15 15 C 1.40927 * 107.49857 * 359.97438 * 12 3 2 16 16 C 1.40496 * 133.08988 * 180.02562 * 15 12 3 17 17 C 1.36428 * 119.79769 * 179.97438 * 16 15 12 18 18 C 1.38934 * 120.60191 * 0.02562 * 17 16 15 19 19 C 1.37972 * 120.69550 * 359.97438 * 18 17 16 20 20 C 1.38043 * 125.60303 * 179.68834 * 2 1 3 21 21 H 1.08994 * 109.46752 * 93.02233 * 1 2 3 22 22 H 1.09002 * 109.47038 * 213.02086 * 1 2 3 23 23 H 1.09003 * 109.46774 * 333.02293 * 1 2 3 24 24 H 0.97000 * 120.00198 * 175.71506 * 7 6 4 25 25 H 1.08993 * 109.47498 * 210.00010 * 13 12 3 26 26 H 1.09006 * 109.46580 * 330.00298 * 13 12 3 27 27 H 1.00903 * 110.99538 * 180.02562 * 14 13 12 28 28 H 1.00897 * 111.00460 * 303.95472 * 14 13 12 29 29 H 1.07991 * 120.09400 * 0.02562 * 16 15 12 30 30 H 1.08010 * 119.69720 * 180.02562 * 17 16 15 31 31 H 1.07993 * 119.65628 * 179.97438 * 18 17 16 32 32 H 1.07994 * 120.04893 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2703 1.1247 0.0000 4 6 1.8216 2.4499 0.0005 5 1 2.3406 3.1955 0.5847 6 6 0.6985 2.8101 -0.7572 7 7 0.3106 2.0542 -1.7510 8 14 -0.2439 4.3700 -0.3470 9 1 0.3935 5.0426 0.8134 10 1 -0.2264 5.2815 -1.5192 11 1 -1.6482 4.0253 -0.0088 12 6 3.6008 0.7179 -0.0006 13 6 4.8083 1.6197 -0.0003 14 7 5.2009 1.9118 1.3849 15 6 3.6131 -0.6913 -0.0004 16 6 4.6475 -1.6421 -0.0003 17 6 4.3454 -2.9725 0.0005 18 6 3.0227 -3.3974 0.0006 19 6 1.9892 -2.4833 0.0005 20 6 2.2687 -1.1224 0.0061 21 1 -0.3632 -0.0542 -1.0262 22 1 -0.3633 -0.8617 0.5600 23 1 -0.3633 0.9159 0.4662 24 1 -0.5016 2.2693 -2.2358 25 1 5.6318 1.1244 -0.5146 26 1 4.5667 2.5506 -0.5134 27 1 6.0088 2.5156 1.4120 28 1 4.4326 2.3128 1.9016 29 1 5.6784 -1.3206 0.0001 30 1 5.1419 -3.7020 0.0010 31 1 2.8010 -4.4544 0.0008 32 1 0.9648 -2.8252 0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082911902.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:45 Heat of formation + Delta-G solvation = 42.038227 kcal Electronic energy + Delta-G solvation = -15887.045925 eV Core-core repulsion = 13426.038068 eV Total energy + Delta-G solvation = -2461.007857 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.89845 -36.05769 -34.03415 -33.40840 -31.01940 -29.10839 -28.69701 -25.74448 -25.42013 -22.64812 -21.08093 -20.22404 -18.39420 -17.13784 -15.68903 -15.34017 -15.09848 -14.47753 -14.02922 -13.88344 -13.35698 -13.07571 -12.76787 -12.58816 -11.87957 -11.80602 -11.61069 -11.44527 -11.32170 -10.91281 -10.71172 -10.46218 -10.22446 -9.86629 -9.69852 -9.07031 -8.40903 -7.78156 -7.15113 -6.82373 -6.32943 -4.55821 2.29781 2.80049 2.86444 2.96634 3.01756 3.78938 3.86306 4.23797 4.86782 5.08509 5.73514 5.80163 5.85019 5.94344 6.10648 6.28130 6.37172 6.48823 6.53134 6.60680 6.71947 6.86530 6.94696 6.98501 7.15559 7.33872 7.54330 7.66449 7.86013 7.93297 8.00916 8.13061 8.30969 8.39912 8.57819 8.83361 9.02761 9.98795 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.010171 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.781990 B = 2752.186088 C = 3544.940945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.482 5.482 3 C 0.315 3.685 4 C -0.472 4.472 5 H 0.093 0.907 6 C 0.080 3.920 7 N -0.797 5.797 8 Si 0.903 3.097 9 H -0.259 1.259 10 H -0.274 1.274 11 H -0.272 1.272 12 C -0.322 4.322 13 C 0.169 3.831 14 N -0.849 5.849 15 C -0.025 4.025 16 C -0.120 4.120 17 C -0.144 4.144 18 C -0.169 4.169 19 C -0.117 4.117 20 C 0.047 3.953 21 H 0.065 0.935 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.282 0.718 25 H 0.051 0.949 26 H 0.021 0.979 27 H 0.318 0.682 28 H 0.336 0.664 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 -0.781 1.992 2.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.167 5.167 3 C 0.206 3.794 4 C -0.505 4.505 5 H 0.111 0.889 6 C -0.139 4.139 7 N -0.424 5.424 8 Si 0.727 3.273 9 H -0.183 1.183 10 H -0.199 1.199 11 H -0.197 1.197 12 C -0.327 4.327 13 C 0.039 3.961 14 N -0.378 5.378 15 C -0.030 4.030 16 C -0.139 4.139 17 C -0.164 4.164 18 C -0.188 4.188 19 C -0.139 4.139 20 C -0.057 4.057 21 H 0.084 0.916 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.129 0.871 28 H 0.148 0.852 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.365 -1.566 1.816 2.426 hybrid contribution -0.969 1.588 -0.260 1.879 sum -1.334 0.022 1.556 2.050 Atomic orbital electron populations 1.21580 0.79107 1.00712 1.01777 1.44353 1.04612 1.04388 1.63340 1.17748 0.86926 0.86047 0.88705 1.18644 1.12464 0.92521 1.26901 0.88911 1.25850 0.96783 0.98603 0.92623 1.69872 1.20987 1.38312 1.13262 0.86339 0.79581 0.81675 0.79724 1.18257 1.19887 1.19670 1.19043 0.92226 0.90913 1.30533 1.19475 0.93761 0.95439 0.87416 1.59015 1.09885 1.52913 1.15969 1.17940 0.91218 0.93455 1.00399 1.20129 0.97196 0.92031 1.04542 1.20227 0.95511 0.95169 1.05494 1.20291 0.92495 0.97180 1.08839 1.19781 0.97871 0.90101 1.06099 1.18289 0.90632 0.87974 1.08854 0.91622 0.93689 0.91210 0.90670 0.93065 0.96134 0.87111 0.85196 0.87965 0.88291 0.88062 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.36 9.16 59.85 0.55 2.91 16 2 N -0.48 -11.82 3.18 -118.87 -0.38 -12.20 16 3 C 0.31 8.04 6.06 -83.98 -0.51 7.53 16 4 C -0.47 -11.59 8.51 -38.22 -0.33 -11.92 16 5 H 0.09 2.21 7.93 -52.48 -0.42 1.79 16 6 C 0.08 1.85 3.94 -17.28 -0.07 1.78 16 7 N -0.80 -19.15 10.73 55.56 0.60 -18.55 16 8 Si 0.90 17.37 29.61 -169.99 -5.03 12.34 16 9 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 10 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 11 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 12 C -0.32 -7.98 5.77 -103.27 -0.60 -8.57 16 13 C 0.17 3.62 7.06 -4.97 -0.04 3.59 16 14 N -0.85 -16.09 9.61 -11.41 -0.11 -16.20 16 15 C -0.02 -0.62 6.09 -106.91 -0.65 -1.27 16 16 C -0.12 -2.66 10.07 -39.38 -0.40 -3.05 16 17 C -0.14 -2.89 9.97 -39.98 -0.40 -3.29 16 18 C -0.17 -3.35 10.02 -39.42 -0.40 -3.74 16 19 C -0.12 -2.53 9.98 -39.42 -0.39 -2.92 16 20 C 0.05 1.13 6.81 -83.69 -0.57 0.56 16 21 H 0.07 1.42 7.15 -51.93 -0.37 1.05 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 1.48 6.76 -51.93 -0.35 1.12 16 24 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.02 0.45 7.91 -51.93 -0.41 0.04 16 27 H 0.32 5.00 9.08 -39.29 -0.36 4.64 16 28 H 0.34 6.41 8.99 -39.29 -0.35 6.06 16 29 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 31 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 272.53 15.07 4.11 4.11 Total: -1.00 -27.29 272.53 -8.54 -35.83 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -3.93 Total: 13.07 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -3.79 Total: -18.40 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.11 Total: -46.96 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.29 -8.54 -35.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082911902.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.871 kcal (2) G-P(sol) polarization free energy of solvation -27.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds