Wall clock time and date at job start Mon Mar 30 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38323 * 125.60381 * 2 1 4 4 C 1.39918 * 125.69123 * 0.02562 * 3 2 1 5 5 H 1.08009 * 119.99592 * 141.35255 * 4 3 2 6 6 C 1.40190 * 120.00459 * 321.34979 * 4 3 2 7 7 N 1.30747 * 119.99853 * 339.56404 * 6 4 3 8 8 Si 1.86801 * 119.99843 * 159.56248 * 6 4 3 9 9 H 1.48497 * 109.47142 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46746 * 120.00138 * 8 6 4 11 11 H 1.48499 * 109.46840 * 239.99825 * 8 6 4 12 12 C 1.39124 * 108.60618 * 180.02562 * 3 2 1 13 13 C 1.50705 * 126.25126 * 180.02562 * 12 3 2 14 14 N 1.46901 * 109.46907 * 89.99595 * 13 12 3 15 15 C 1.40927 * 107.49857 * 359.97438 * 12 3 2 16 16 C 1.40496 * 133.08988 * 180.02562 * 15 12 3 17 17 C 1.36428 * 119.79769 * 179.97438 * 16 15 12 18 18 C 1.38934 * 120.60191 * 0.02562 * 17 16 15 19 19 C 1.37972 * 120.69550 * 359.97438 * 18 17 16 20 20 C 1.38043 * 125.60303 * 179.68834 * 2 1 3 21 21 H 1.08994 * 109.46752 * 93.02233 * 1 2 3 22 22 H 1.09002 * 109.47038 * 213.02086 * 1 2 3 23 23 H 1.09003 * 109.46774 * 333.02293 * 1 2 3 24 24 H 0.97000 * 120.00198 * 175.71506 * 7 6 4 25 25 H 1.08993 * 109.47498 * 210.00010 * 13 12 3 26 26 H 1.09006 * 109.46580 * 330.00298 * 13 12 3 27 27 H 1.00903 * 110.99538 * 180.02562 * 14 13 12 28 28 H 1.00897 * 111.00460 * 303.95472 * 14 13 12 29 29 H 1.07991 * 120.09400 * 0.02562 * 16 15 12 30 30 H 1.08010 * 119.69720 * 180.02562 * 17 16 15 31 31 H 1.07993 * 119.65628 * 179.97438 * 18 17 16 32 32 H 1.07994 * 120.04893 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2703 1.1247 0.0000 4 6 1.8216 2.4499 0.0005 5 1 2.3406 3.1955 0.5847 6 6 0.6985 2.8101 -0.7572 7 7 0.3106 2.0542 -1.7510 8 14 -0.2439 4.3700 -0.3470 9 1 0.3935 5.0426 0.8134 10 1 -0.2264 5.2815 -1.5192 11 1 -1.6482 4.0253 -0.0088 12 6 3.6008 0.7179 -0.0006 13 6 4.8083 1.6197 -0.0003 14 7 5.2009 1.9118 1.3849 15 6 3.6131 -0.6913 -0.0004 16 6 4.6475 -1.6421 -0.0003 17 6 4.3454 -2.9725 0.0005 18 6 3.0227 -3.3974 0.0006 19 6 1.9892 -2.4833 0.0005 20 6 2.2687 -1.1224 0.0061 21 1 -0.3632 -0.0542 -1.0262 22 1 -0.3633 -0.8617 0.5600 23 1 -0.3633 0.9159 0.4662 24 1 -0.5016 2.2693 -2.2358 25 1 5.6318 1.1244 -0.5146 26 1 4.5667 2.5506 -0.5134 27 1 6.0088 2.5156 1.4120 28 1 4.4326 2.3128 1.9016 29 1 5.6784 -1.3206 0.0001 30 1 5.1419 -3.7020 0.0010 31 1 2.8010 -4.4544 0.0008 32 1 0.9648 -2.8252 0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082911902.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:44 Heat of formation + Delta-G solvation = 25.893268 kcal Electronic energy + Delta-G solvation = -15887.746023 eV Core-core repulsion = 13426.038068 eV Total energy + Delta-G solvation = -2461.707955 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.62330 -37.72947 -35.70016 -35.15736 -32.69204 -30.78498 -30.44075 -27.43099 -27.14998 -24.34748 -22.78959 -21.91628 -20.12443 -18.91123 -17.37565 -16.98723 -16.78877 -16.10752 -15.74739 -15.50054 -15.00132 -14.74084 -14.42512 -14.23723 -13.52452 -13.47503 -13.29290 -13.14629 -12.94623 -12.51110 -12.35234 -12.06993 -11.88992 -11.55824 -11.35565 -10.80272 -10.12410 -9.37172 -8.90031 -8.55806 -8.08627 -6.37559 0.60523 1.13882 1.31965 1.39064 1.52128 2.12005 2.19096 2.52456 3.08880 3.38524 4.13667 4.16636 4.23126 4.43578 4.51792 4.60651 4.68878 4.81111 4.86580 4.90108 5.03023 5.19115 5.21583 5.33570 5.45054 5.66816 5.83008 5.98264 6.09289 6.23385 6.38296 6.46243 6.59594 6.81604 6.88666 7.05105 7.25982 8.27984 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.010171 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.781990 B = 2752.186088 C = 3544.940945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.492 5.492 3 C 0.283 3.717 4 C -0.497 4.497 5 H 0.089 0.911 6 C 0.048 3.952 7 N -0.827 5.827 8 Si 0.972 3.028 9 H -0.259 1.259 10 H -0.272 1.272 11 H -0.261 1.261 12 C -0.345 4.345 13 C 0.177 3.823 14 N -0.846 5.846 15 C -0.061 4.061 16 C -0.132 4.132 17 C -0.141 4.141 18 C -0.158 4.158 19 C -0.129 4.129 20 C 0.016 3.984 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.290 0.710 25 H 0.054 0.946 26 H 0.009 0.991 27 H 0.338 0.662 28 H 0.335 0.665 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 -1.769 2.413 2.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.177 5.177 3 C 0.173 3.827 4 C -0.530 4.530 5 H 0.107 0.893 6 C -0.167 4.167 7 N -0.455 5.455 8 Si 0.793 3.207 9 H -0.182 1.182 10 H -0.198 1.198 11 H -0.186 1.186 12 C -0.350 4.350 13 C 0.047 3.953 14 N -0.376 5.376 15 C -0.066 4.066 16 C -0.151 4.151 17 C -0.161 4.161 18 C -0.177 4.177 19 C -0.150 4.150 20 C -0.087 4.087 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.027 0.973 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.128 0.872 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.460 -2.565 2.243 3.438 hybrid contribution -0.838 1.731 -0.399 1.964 sum -1.298 -0.834 1.844 2.405 Atomic orbital electron populations 1.21587 0.78004 1.01538 1.01566 1.44525 1.05468 1.04357 1.63324 1.18096 0.87684 0.86866 0.90010 1.18785 1.13901 0.92454 1.27892 0.89292 1.26545 0.96930 1.01406 0.91864 1.69909 1.21609 1.40042 1.13930 0.85298 0.78438 0.77700 0.79216 1.18244 1.19765 1.18570 1.19512 0.93025 0.91858 1.30595 1.19337 0.92958 0.94465 0.88532 1.58898 1.10561 1.53673 1.14422 1.18324 0.92378 0.93927 1.01981 1.20387 0.97145 0.92828 1.04758 1.20674 0.96867 0.94955 1.03557 1.20805 0.91941 0.98870 1.06080 1.20155 0.99617 0.89249 1.05966 1.18758 0.90823 0.89074 1.10082 0.92462 0.91216 0.91715 0.89958 0.92766 0.97271 0.84908 0.85304 0.87172 0.84613 0.84172 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.93 9.16 127.77 1.17 6.10 16 2 N -0.49 -24.51 3.18 -529.99 -1.69 -26.20 16 3 C 0.28 14.86 6.06 38.74 0.23 15.09 16 4 C -0.50 -25.09 8.51 23.15 0.20 -24.90 16 5 H 0.09 4.38 7.93 -2.91 -0.02 4.35 16 6 C 0.05 2.27 3.94 85.33 0.34 2.60 16 7 N -0.83 -40.31 10.73 21.87 0.23 -40.07 16 8 Si 0.97 35.70 29.61 68.60 2.03 37.73 16 9 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 10 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 11 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 12 C -0.34 -17.50 5.77 -18.99 -0.11 -17.61 16 13 C 0.18 7.76 7.06 85.56 0.60 8.36 16 14 N -0.85 -32.03 9.61 -190.00 -1.83 -33.86 16 15 C -0.06 -3.03 6.09 -21.35 -0.13 -3.16 16 16 C -0.13 -5.70 10.07 22.40 0.23 -5.48 16 17 C -0.14 -5.22 9.97 22.01 0.22 -5.00 16 18 C -0.16 -5.72 10.02 22.37 0.22 -5.50 16 19 C -0.13 -5.32 9.98 22.37 0.22 -5.10 16 20 C 0.02 0.80 6.81 39.06 0.27 1.07 16 21 H 0.06 2.51 7.15 -2.39 -0.02 2.50 16 22 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 23 H 0.06 2.77 6.76 -2.39 -0.02 2.76 16 24 H 0.29 12.75 8.30 -92.71 -0.77 11.98 16 25 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.01 0.41 7.91 -2.38 -0.02 0.40 16 27 H 0.34 10.38 9.08 -89.69 -0.81 9.57 16 28 H 0.34 12.94 8.99 -89.70 -0.81 12.14 16 29 H 0.11 4.42 8.06 -2.92 -0.02 4.40 16 30 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 31 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 32 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -58.92 272.53 1.74 -57.18 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: -0.48 Total: 38.73 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 3.46 Total: -33.51 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -3.28 Total: -100.13 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.73 kcal Total: -58.92 1.74 -57.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082911902.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.074 kcal (2) G-P(sol) polarization free energy of solvation -58.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds