Wall clock time and date at job start Mon Mar 30 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47210 * 2 1 4 4 C 1.50702 * 109.47331 * 240.00091 * 2 1 3 5 5 H 1.08006 * 119.99800 * 240.00384 * 4 2 1 6 6 C 1.37881 * 119.99864 * 59.99671 * 4 2 1 7 7 N 1.31509 * 120.00363 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99805 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46945 * 90.00368 * 8 6 4 10 10 H 1.48497 * 109.46911 * 210.00139 * 8 6 4 11 11 H 1.48500 * 109.47196 * 330.00259 * 8 6 4 12 12 C 1.50699 * 109.47176 * 120.00040 * 2 1 3 13 13 C 1.34237 * 126.50095 * 240.02572 * 12 2 1 14 14 N 1.36834 * 109.92875 * 180.02562 * 13 12 2 15 15 H 0.97003 * 125.06052 * 180.02562 * 14 13 12 16 16 C 1.37685 * 109.87435 * 359.93094 * 14 13 12 17 17 C 1.39123 * 133.50866 * 180.02562 * 16 14 13 18 18 C 1.37752 * 119.78013 * 180.02562 * 17 16 14 19 19 C 1.38823 * 120.66711 * 0.02562 * 18 17 16 20 20 C 1.36625 * 120.53050 * 359.97438 * 19 18 17 21 21 C 1.39637 * 119.75993 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.47037 * 300.00219 * 1 2 3 23 23 H 1.09003 * 109.46790 * 59.99754 * 1 2 3 24 24 H 1.08999 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.00904 * 110.99839 * 180.02562 * 3 2 1 26 26 H 1.00903 * 110.99670 * 303.95478 * 3 2 1 27 27 H 0.96993 * 120.00711 * 179.97438 * 7 6 4 28 28 H 1.08000 * 125.03439 * 359.97438 * 13 12 2 29 29 H 1.08006 * 120.11059 * 0.06012 * 17 16 14 30 30 H 1.08001 * 119.66224 * 180.02562 * 18 17 16 31 31 H 1.08001 * 119.73625 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.12341 * 179.72856 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3214 -1.1203 -4.0080 9 1 1.3427 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0323 -0.7104 1.2304 13 6 2.8068 -0.1875 2.1941 14 7 3.0606 -1.1312 3.1519 15 1 3.5975 -0.9878 3.9470 16 6 2.4386 -2.3139 2.8202 17 6 2.3693 -3.5631 3.4285 18 6 1.6475 -4.5746 2.8339 19 6 0.9874 -4.3609 1.6315 20 6 1.0420 -3.1420 1.0167 21 6 1.7670 -2.1023 1.6024 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.0284 1.4119 -0.0004 26 1 1.6441 1.9013 -0.7814 27 1 0.7095 1.1618 -3.4844 28 1 3.1756 0.8275 2.2106 29 1 2.8793 -3.7392 4.3641 30 1 1.5947 -5.5435 3.3080 31 1 0.4261 -5.1647 1.1783 32 1 0.5296 -2.9844 0.0793 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084363302.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:24 Heat of formation + Delta-G solvation = 54.367947 kcal Electronic energy + Delta-G solvation = -15905.247844 eV Core-core repulsion = 13444.774644 eV Total energy + Delta-G solvation = -2460.473200 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.54671 -36.39416 -35.46119 -31.74562 -30.52949 -28.80052 -27.63553 -27.17273 -25.12322 -22.19949 -21.26924 -21.00678 -18.14654 -17.17059 -16.14060 -15.60657 -14.83658 -14.59435 -13.79974 -13.69088 -13.46748 -13.24743 -12.94256 -12.37609 -11.75012 -11.29477 -11.12659 -10.98741 -10.92663 -10.82944 -10.51927 -10.35228 -10.04497 -9.74795 -9.48418 -8.84134 -8.50283 -7.56786 -7.16985 -6.79458 -5.97106 -4.13887 1.77520 2.22855 3.26829 3.34235 3.38129 3.59893 3.78670 4.39467 4.58434 5.20366 5.31232 5.51727 5.60878 5.78051 6.03873 6.06268 6.27195 6.48391 6.54440 6.68671 6.81394 7.03703 7.11536 7.23547 7.24867 7.42339 7.49067 7.76086 7.81946 7.88063 8.06252 8.21774 8.31020 8.81644 9.04457 9.20059 9.57695 10.96593 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028144 B = 0.009603 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.651835 B = 2915.196947 C = 3438.602320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.294 3.706 3 N -0.849 5.849 4 C -0.525 4.525 5 H 0.054 0.946 6 C 0.066 3.934 7 N -0.894 5.894 8 Si 0.891 3.109 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.098 4.098 13 C 0.018 3.982 14 N -0.606 5.606 15 H 0.405 0.595 16 C 0.088 3.912 17 C -0.145 4.145 18 C -0.108 4.108 19 C -0.170 4.170 20 C -0.048 4.048 21 C -0.091 4.091 22 H 0.014 0.986 23 H 0.082 0.918 24 H 0.030 0.970 25 H 0.310 0.690 26 H 0.356 0.644 27 H 0.262 0.738 28 H 0.166 0.834 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 -4.732 8.664 10.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.202 3.798 3 N -0.379 5.379 4 C -0.565 4.565 5 H 0.072 0.928 6 C -0.135 4.135 7 N -0.534 5.534 8 Si 0.719 3.281 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.105 4.105 13 C -0.104 4.104 14 N -0.210 5.210 15 H 0.240 0.760 16 C -0.020 4.020 17 C -0.166 4.166 18 C -0.127 4.127 19 C -0.189 4.189 20 C -0.067 4.067 21 C -0.097 4.097 22 H 0.033 0.967 23 H 0.100 0.900 24 H 0.049 0.951 25 H 0.119 0.881 26 H 0.172 0.828 27 H 0.073 0.927 28 H 0.184 0.816 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.766 -4.452 9.293 10.455 hybrid contribution 1.092 -0.740 -1.453 1.962 sum 2.859 -5.192 7.841 9.829 Atomic orbital electron populations 1.21676 0.96678 0.99089 1.00416 1.16732 0.91490 0.85029 0.86555 1.59428 1.11081 1.15475 1.51875 1.21830 1.31086 1.12812 0.90789 0.92779 1.24961 0.94624 0.95083 0.98836 1.69683 1.36986 1.23079 1.23609 0.86609 0.79323 0.79490 0.82669 1.20644 1.21341 1.20069 1.20947 1.00383 0.91490 0.97651 1.21562 1.04057 0.94330 0.90489 1.41682 1.47064 1.09372 1.22885 0.76013 1.18312 0.98798 0.87995 0.96876 1.19829 1.04966 0.91040 1.00798 1.20617 0.98311 0.97657 0.96126 1.20526 1.03857 0.97422 0.97108 1.20507 0.96093 0.91265 0.98813 1.19169 1.00966 0.94852 0.94671 0.96676 0.89976 0.95103 0.88103 0.82781 0.92734 0.81640 0.87354 0.86827 0.86909 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 8.43 37.16 0.31 -2.64 16 2 C 0.29 7.12 0.86 -133.90 -0.12 7.01 16 3 N -0.85 -19.60 8.19 -1.14 -0.01 -19.61 16 4 C -0.53 -13.88 8.08 -34.44 -0.28 -14.16 16 5 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.74 5.22 -17.82 -0.09 1.65 16 7 N -0.89 -23.74 9.57 55.43 0.53 -23.21 16 8 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C -0.10 -2.18 4.83 -102.71 -0.50 -2.67 16 13 C 0.02 0.34 11.00 -16.73 -0.18 0.16 16 14 N -0.61 -10.00 6.07 -10.65 -0.06 -10.07 16 15 H 0.40 5.04 8.96 -40.82 -0.37 4.67 16 16 C 0.09 1.63 7.28 -83.99 -0.61 1.01 16 17 C -0.15 -2.31 10.08 -39.43 -0.40 -2.71 16 18 C -0.11 -1.66 10.01 -39.54 -0.40 -2.05 16 19 C -0.17 -2.86 9.97 -39.95 -0.40 -3.26 16 20 C -0.05 -0.97 9.60 -39.64 -0.38 -1.35 16 21 C -0.09 -1.93 6.11 -105.13 -0.64 -2.57 16 22 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 24 H 0.03 0.73 6.81 -51.93 -0.35 0.38 16 25 H 0.31 6.85 8.55 -39.29 -0.34 6.51 16 26 H 0.36 8.82 6.99 -39.29 -0.27 8.54 16 27 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.17 2.84 7.57 -52.49 -0.40 2.44 16 29 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.13 2.63 7.28 -52.49 -0.38 2.25 16 LS Contribution 266.76 15.07 4.02 4.02 Total: -1.00 -28.14 266.76 -7.88 -36.02 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -3.66 Total: 18.52 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -3.68 Total: -21.59 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.46 Total: -52.88 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.14 -7.88 -36.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363302.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.384 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds