Wall clock time and date at job start Mon Mar 30 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47210 * 2 1 4 4 C 1.50702 * 109.47331 * 240.00091 * 2 1 3 5 5 H 1.08006 * 119.99800 * 240.00384 * 4 2 1 6 6 C 1.37881 * 119.99864 * 59.99671 * 4 2 1 7 7 N 1.31509 * 120.00363 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99805 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46945 * 90.00368 * 8 6 4 10 10 H 1.48497 * 109.46911 * 210.00139 * 8 6 4 11 11 H 1.48500 * 109.47196 * 330.00259 * 8 6 4 12 12 C 1.50699 * 109.47176 * 120.00040 * 2 1 3 13 13 C 1.34237 * 126.50095 * 240.02572 * 12 2 1 14 14 N 1.36834 * 109.92875 * 180.02562 * 13 12 2 15 15 H 0.97003 * 125.06052 * 180.02562 * 14 13 12 16 16 C 1.37685 * 109.87435 * 359.93094 * 14 13 12 17 17 C 1.39123 * 133.50866 * 180.02562 * 16 14 13 18 18 C 1.37752 * 119.78013 * 180.02562 * 17 16 14 19 19 C 1.38823 * 120.66711 * 0.02562 * 18 17 16 20 20 C 1.36625 * 120.53050 * 359.97438 * 19 18 17 21 21 C 1.39637 * 119.75993 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.47037 * 300.00219 * 1 2 3 23 23 H 1.09003 * 109.46790 * 59.99754 * 1 2 3 24 24 H 1.08999 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.00904 * 110.99839 * 180.02562 * 3 2 1 26 26 H 1.00903 * 110.99670 * 303.95478 * 3 2 1 27 27 H 0.96993 * 120.00711 * 179.97438 * 7 6 4 28 28 H 1.08000 * 125.03439 * 359.97438 * 13 12 2 29 29 H 1.08006 * 120.11059 * 0.06012 * 17 16 14 30 30 H 1.08001 * 119.66224 * 180.02562 * 18 17 16 31 31 H 1.08001 * 119.73625 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.12341 * 179.72856 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3214 -1.1203 -4.0080 9 1 1.3427 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0323 -0.7104 1.2304 13 6 2.8068 -0.1875 2.1941 14 7 3.0606 -1.1312 3.1519 15 1 3.5975 -0.9878 3.9470 16 6 2.4386 -2.3139 2.8202 17 6 2.3693 -3.5631 3.4285 18 6 1.6475 -4.5746 2.8339 19 6 0.9874 -4.3609 1.6315 20 6 1.0420 -3.1420 1.0167 21 6 1.7670 -2.1023 1.6024 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.0284 1.4119 -0.0004 26 1 1.6441 1.9013 -0.7814 27 1 0.7095 1.1618 -3.4844 28 1 3.1756 0.8275 2.2106 29 1 2.8793 -3.7392 4.3641 30 1 1.5947 -5.5435 3.3080 31 1 0.4261 -5.1647 1.1783 32 1 0.5296 -2.9844 0.0793 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363302.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:24 Heat of formation + Delta-G solvation = 36.666387 kcal Electronic energy + Delta-G solvation = -15906.015441 eV Core-core repulsion = 13444.774644 eV Total energy + Delta-G solvation = -2461.240797 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.95525 -37.85671 -37.18640 -33.61434 -32.06093 -30.19857 -29.11882 -29.03075 -27.17320 -23.55952 -22.99674 -22.37714 -19.74488 -18.75025 -17.96619 -17.08165 -16.56471 -16.05517 -15.56835 -15.20364 -15.01920 -14.74535 -14.55522 -14.06839 -13.27641 -13.09993 -12.94653 -12.79488 -12.45772 -12.37350 -12.28593 -12.19489 -11.79523 -11.63612 -11.23105 -10.58665 -10.24402 -9.06811 -8.93843 -8.31342 -7.93681 -6.20634 0.40991 0.87308 1.37092 1.40433 1.48547 2.08205 2.43322 2.49160 3.14970 3.18185 4.05194 4.18617 4.33591 4.49379 4.54084 4.63798 4.75732 5.00528 5.06398 5.15263 5.19351 5.24430 5.39052 5.63239 5.71162 5.81349 5.87354 5.94673 6.09830 6.17855 6.31661 6.45118 6.80144 6.98711 7.12912 7.24902 7.54823 8.92771 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028144 B = 0.009603 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.651835 B = 2915.196947 C = 3438.602320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.293 3.707 3 N -0.838 5.838 4 C -0.533 4.533 5 H 0.032 0.968 6 C 0.029 3.971 7 N -0.907 5.907 8 Si 0.943 3.057 9 H -0.281 1.281 10 H -0.281 1.281 11 H -0.280 1.280 12 C -0.150 4.150 13 C 0.037 3.963 14 N -0.588 5.588 15 H 0.427 0.573 16 C 0.076 3.924 17 C -0.137 4.137 18 C -0.104 4.104 19 C -0.163 4.163 20 C -0.085 4.085 21 C -0.126 4.126 22 H 0.016 0.984 23 H 0.060 0.940 24 H 0.023 0.977 25 H 0.316 0.684 26 H 0.345 0.655 27 H 0.263 0.737 28 H 0.183 0.817 29 H 0.148 0.852 30 H 0.156 0.844 31 H 0.135 0.865 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 -6.082 10.496 12.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.201 3.799 3 N -0.366 5.366 4 C -0.573 4.573 5 H 0.051 0.949 6 C -0.171 4.171 7 N -0.547 5.547 8 Si 0.770 3.230 9 H -0.207 1.207 10 H -0.206 1.206 11 H -0.205 1.205 12 C -0.157 4.157 13 C -0.088 4.088 14 N -0.193 5.193 15 H 0.266 0.734 16 C -0.032 4.032 17 C -0.157 4.157 18 C -0.123 4.123 19 C -0.182 4.182 20 C -0.104 4.104 21 C -0.131 4.131 22 H 0.035 0.965 23 H 0.079 0.921 24 H 0.042 0.958 25 H 0.125 0.875 26 H 0.160 0.840 27 H 0.073 0.927 28 H 0.200 0.800 29 H 0.165 0.835 30 H 0.174 0.826 31 H 0.153 0.847 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.814 -5.811 11.162 12.894 hybrid contribution 0.765 -0.389 -1.955 2.135 sum 3.579 -6.200 9.207 11.663 Atomic orbital electron populations 1.21536 0.97672 0.98244 0.99276 1.16609 0.90838 0.85266 0.87200 1.59413 1.11371 1.14853 1.50968 1.21927 1.30892 1.12257 0.92256 0.94944 1.25510 0.94951 0.95769 1.00844 1.69771 1.37335 1.23613 1.23970 0.85804 0.78436 0.78583 0.80179 1.20683 1.20647 1.20520 1.20843 1.03583 0.92830 0.98413 1.21702 1.02128 0.95063 0.89895 1.41560 1.46527 1.08277 1.22986 0.73413 1.18598 0.98881 0.89395 0.96315 1.20320 1.04051 0.89635 1.01709 1.21105 0.96731 0.99347 0.95114 1.20857 1.03277 0.96542 0.97552 1.20480 0.97965 0.93048 0.98895 1.19408 1.02502 0.94759 0.96466 0.96453 0.92079 0.95799 0.87527 0.84003 0.92707 0.79997 0.83471 0.82617 0.84678 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.56 8.43 71.98 0.61 -4.95 16 2 C 0.29 14.58 0.86 2.03 0.00 14.58 16 3 N -0.84 -39.20 8.19 -157.51 -1.29 -40.49 16 4 C -0.53 -29.07 8.08 25.60 0.21 -28.87 16 5 H 0.03 1.87 7.74 -2.91 -0.02 1.84 16 6 C 0.03 1.55 5.22 84.66 0.44 1.99 16 7 N -0.91 -49.11 9.57 21.45 0.21 -48.90 16 8 Si 0.94 43.73 29.54 68.60 2.03 45.75 16 9 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 C -0.15 -6.72 4.83 -18.63 -0.09 -6.81 16 13 C 0.04 1.35 11.00 83.00 0.91 2.26 16 14 N -0.59 -17.99 6.07 -187.61 -1.14 -19.12 16 15 H 0.43 9.15 8.96 -92.71 -0.83 8.31 16 16 C 0.08 2.65 7.28 39.03 0.28 2.94 16 17 C -0.14 -3.80 10.08 22.37 0.23 -3.57 16 18 C -0.10 -2.79 10.01 22.29 0.22 -2.57 16 19 C -0.16 -5.24 9.97 22.03 0.22 -5.02 16 20 C -0.09 -3.49 9.60 22.23 0.21 -3.28 16 21 C -0.13 -5.37 6.11 -20.20 -0.12 -5.49 16 22 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 23 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 24 H 0.02 1.19 6.81 -2.39 -0.02 1.17 16 25 H 0.32 14.00 8.55 -89.69 -0.77 13.23 16 26 H 0.35 17.43 6.99 -89.69 -0.63 16.80 16 27 H 0.26 13.72 8.31 -92.71 -0.77 12.94 16 28 H 0.18 5.94 7.57 -2.91 -0.02 5.92 16 29 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 30 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.10 4.41 7.28 -2.91 -0.02 4.39 16 Total: -1.00 -61.88 266.76 1.86 -60.02 By element: Atomic # 1 Polarization: 42.58 SS G_CDS: -1.06 Total: 41.52 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 3.12 Total: -38.78 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -2.22 Total: -108.51 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -61.88 1.86 -60.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363302.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.687 kcal (2) G-P(sol) polarization free energy of solvation -61.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds