Wall clock time and date at job start Mon Mar 30 2020 02:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00160 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46996 * 120.00312 * 8 6 4 11 11 H 1.48495 * 109.46665 * 239.99993 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99495 * 2 1 3 13 13 C 1.34233 * 125.03649 * 270.00387 * 12 2 1 14 14 C 1.46487 * 106.99497 * 180.02562 * 13 12 2 15 15 C 1.39636 * 134.03286 * 180.02562 * 14 13 12 16 16 C 1.36624 * 119.76558 * 179.97438 * 15 14 13 17 17 C 1.38831 * 120.53083 * 0.02562 * 16 15 14 18 18 C 1.37749 * 120.66105 * 0.02562 * 17 16 15 19 19 C 1.39124 * 119.78581 * 359.95670 * 18 17 16 20 20 N 1.36836 * 125.03110 * 89.69886 * 12 2 1 21 21 H 0.97008 * 125.06099 * 0.02562 * 20 12 2 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 300.00347 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.00176 * 1 2 3 25 25 H 1.00891 * 111.00138 * 56.04633 * 3 2 1 26 26 H 1.00900 * 110.99487 * 180.02562 * 3 2 1 27 27 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 28 28 H 1.07994 * 126.50470 * 359.97438 * 13 12 2 29 29 H 1.07998 * 120.11462 * 359.97438 * 15 14 13 30 30 H 1.07997 * 119.73601 * 179.97438 * 16 15 14 31 31 H 1.08000 * 119.66862 * 179.97438 * 17 16 15 32 32 H 1.08005 * 120.10912 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0080 9 1 3.1456 -2.2877 -3.6037 10 1 1.1662 -1.5867 -4.8161 11 1 3.1467 -0.1874 -4.8164 12 6 2.0324 -0.7103 1.2305 13 6 2.2892 -0.1216 2.4092 14 6 2.7541 -1.1709 3.3195 15 6 3.1652 -1.1861 4.6539 16 6 3.5504 -2.3628 5.2317 17 6 3.5370 -3.5441 4.5025 18 6 3.1361 -3.5516 3.1846 19 6 2.7394 -2.3651 2.5761 20 7 2.2887 -2.0519 1.3134 21 1 2.1744 -2.6869 0.5890 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6441 1.9013 0.7813 26 1 3.0283 1.4120 -0.0004 27 1 0.7095 1.1618 -3.4844 28 1 2.1755 0.9268 2.6420 29 1 3.1786 -0.2710 5.2272 30 1 3.8686 -2.3739 6.2636 31 1 3.8447 -4.4662 4.9730 32 1 3.1296 -4.4757 2.6256 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363309.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:11 Heat of formation + Delta-G solvation = 37.864406 kcal Electronic energy + Delta-G solvation = -15626.496102 eV Core-core repulsion = 13165.307255 eV Total energy + Delta-G solvation = -2461.188847 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.10367 -38.39396 -36.47755 -33.69083 -32.56182 -30.38916 -29.32512 -28.91888 -27.22454 -23.99217 -22.66101 -22.08639 -20.44470 -18.58000 -18.30190 -16.95935 -16.53630 -15.99662 -15.83771 -15.26842 -14.97865 -14.76280 -14.63283 -14.15563 -13.68382 -13.33888 -12.89003 -12.82312 -12.61235 -12.39616 -12.28907 -12.14467 -11.82296 -11.63566 -11.03535 -10.55726 -10.47666 -9.11898 -8.91110 -8.47060 -7.94677 -6.20091 0.32535 0.82468 1.40787 1.45326 1.52165 1.94714 2.42476 2.45243 3.08824 3.25893 3.90087 4.08738 4.27089 4.31739 4.41558 4.56755 4.64987 4.79846 4.95234 5.06955 5.10805 5.14104 5.25099 5.30311 5.63564 5.68313 5.76168 5.84182 5.97333 6.00750 6.29572 6.39057 6.69088 6.80356 7.04550 7.24745 7.52899 9.03197 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039481 B = 0.007392 C = 0.006596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.031947 B = 3787.200010 C = 4243.849341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.293 3.707 3 N -0.803 5.803 4 C -0.548 4.548 5 H 0.047 0.953 6 C 0.048 3.952 7 N -0.862 5.862 8 Si 0.941 3.059 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.286 1.286 12 C 0.095 3.905 13 C -0.258 4.258 14 C -0.127 4.127 15 C -0.091 4.091 16 C -0.150 4.150 17 C -0.108 4.108 18 C -0.141 4.141 19 C 0.062 3.938 20 N -0.583 5.583 21 H 0.416 0.584 22 H 0.026 0.974 23 H 0.025 0.975 24 H 0.073 0.927 25 H 0.314 0.686 26 H 0.323 0.677 27 H 0.255 0.745 28 H 0.142 0.858 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 -5.973 11.360 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.200 3.800 3 N -0.330 5.330 4 C -0.587 4.587 5 H 0.065 0.935 6 C -0.157 4.157 7 N -0.497 5.497 8 Si 0.768 3.232 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.212 1.212 12 C -0.018 4.018 13 C -0.282 4.282 14 C -0.132 4.132 15 C -0.110 4.110 16 C -0.169 4.169 17 C -0.126 4.126 18 C -0.162 4.162 19 C -0.046 4.046 20 N -0.185 5.185 21 H 0.253 0.747 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.091 0.909 25 H 0.126 0.874 26 H 0.135 0.865 27 H 0.065 0.935 28 H 0.160 0.840 29 H 0.150 0.850 30 H 0.167 0.833 31 H 0.171 0.829 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.934 -5.817 10.394 12.267 hybrid contribution 0.568 -0.700 -0.621 1.095 sum 3.502 -6.518 9.773 12.258 Atomic orbital electron populations 1.21601 0.96195 0.98774 1.00563 1.17169 0.91866 0.84701 0.86253 1.59121 1.12008 1.13444 1.48424 1.21050 1.34051 1.12573 0.91034 0.93484 1.25471 0.94519 0.94936 1.00769 1.70134 1.34748 1.21961 1.22867 0.85804 0.78084 0.78647 0.80661 1.19861 1.20759 1.21195 1.22451 0.97559 0.83429 0.98343 1.21446 1.15190 0.98813 0.92770 1.19540 1.05436 0.92923 0.95312 1.20519 0.98790 0.99532 0.92124 1.20940 1.02840 0.91936 1.01173 1.21130 0.99505 0.99421 0.92591 1.20355 1.04581 0.94793 0.96469 1.18822 1.03137 0.96684 0.85915 1.41992 1.57014 1.08523 1.10941 0.74658 0.95506 0.95635 0.90862 0.87382 0.86515 0.93520 0.84003 0.85024 0.83286 0.82866 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.32 8.49 71.98 0.61 -4.71 16 2 C 0.29 13.71 0.76 2.04 0.00 13.71 16 3 N -0.80 -36.39 7.92 -157.51 -1.25 -37.64 16 4 C -0.55 -28.17 7.91 25.60 0.20 -27.97 16 5 H 0.05 2.40 6.74 -2.91 -0.02 2.38 16 6 C 0.05 2.52 5.23 84.66 0.44 2.96 16 7 N -0.86 -46.95 10.80 21.45 0.23 -46.72 16 8 Si 0.94 41.91 29.54 68.60 2.03 43.94 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 C 0.09 4.05 5.66 40.86 0.23 4.28 16 13 C -0.26 -10.17 10.31 23.51 0.24 -9.93 16 14 C -0.13 -4.67 6.37 -20.20 -0.13 -4.80 16 15 C -0.09 -2.69 10.05 22.23 0.22 -2.47 16 16 C -0.15 -3.64 9.97 22.03 0.22 -3.42 16 17 C -0.11 -2.59 10.01 22.30 0.22 -2.37 16 18 C -0.14 -4.14 10.08 22.37 0.23 -3.91 16 19 C 0.06 2.26 7.28 39.03 0.28 2.54 16 20 N -0.58 -23.13 5.69 -175.91 -1.00 -24.13 16 21 H 0.42 15.82 7.95 -92.70 -0.74 15.08 16 22 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 25 H 0.31 12.75 8.05 -89.70 -0.72 12.03 16 26 H 0.32 14.46 8.98 -89.69 -0.81 13.65 16 27 H 0.26 13.41 8.31 -92.70 -0.77 12.64 16 28 H 0.14 5.14 7.41 -2.91 -0.02 5.12 16 29 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -58.81 269.43 1.69 -57.13 By element: Atomic # 1 Polarization: 44.62 SS G_CDS: -1.10 Total: 43.52 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 2.78 Total: -36.09 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -2.02 Total: -108.49 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -58.81 1.69 -57.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363309.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.993 kcal (2) G-P(sol) polarization free energy of solvation -58.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds