Wall clock time and date at job start Mon Mar 30 2020 02:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.47034 * 2 1 4 4 C 1.50699 * 109.46979 * 120.00478 * 2 1 3 5 5 H 1.07998 * 120.00124 * 119.99984 * 4 2 1 6 6 C 1.37878 * 119.99973 * 299.99601 * 4 2 1 7 7 N 1.31520 * 119.99841 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00336 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47027 * 89.99913 * 8 6 4 10 10 H 1.48496 * 109.47201 * 210.00174 * 8 6 4 11 11 H 1.48505 * 109.46874 * 330.00141 * 8 6 4 12 12 C 1.50699 * 109.47064 * 240.00276 * 2 1 3 13 13 C 1.35488 * 125.51094 * 244.97562 * 12 2 1 14 14 C 1.39779 * 107.98197 * 179.97438 * 13 12 2 15 15 C 1.38417 * 107.05512 * 359.97438 * 14 13 12 16 16 C 1.41093 * 132.46010 * 180.02562 * 15 14 13 17 17 C 1.35870 * 119.29573 * 179.97438 * 16 15 14 18 18 C 1.40745 * 119.69855 * 359.97438 * 17 16 15 19 19 C 1.34645 * 120.54952 * 0.02562 * 18 17 16 20 20 N 1.36295 * 125.51492 * 64.97394 * 12 2 1 21 21 H 1.09002 * 109.46946 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.46837 * 299.99703 * 1 2 3 23 23 H 1.09002 * 109.47057 * 59.99849 * 1 2 3 24 24 H 1.00901 * 110.99434 * 179.97438 * 3 2 1 25 25 H 1.00899 * 110.99921 * 303.95271 * 3 2 1 26 26 H 0.96999 * 120.00161 * 179.97438 * 7 6 4 27 27 H 1.07993 * 126.00815 * 0.02562 * 13 12 2 28 28 H 1.07996 * 126.47231 * 179.97438 * 14 13 12 29 29 H 1.08005 * 120.35098 * 0.02562 * 16 15 14 30 30 H 1.08000 * 120.15215 * 180.02562 * 17 16 15 31 31 H 1.08004 * 119.72416 * 179.72240 * 18 17 16 32 32 H 1.07998 * 119.65032 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.6305 -0.5442 4.4118 10 1 1.3444 -0.9492 5.1122 11 1 2.4879 -2.5656 3.7121 12 6 2.0324 -0.7103 -1.2305 13 6 2.7345 -1.8690 -1.2388 14 6 3.0104 -2.1969 -2.5693 15 6 2.4538 -1.2034 -3.3560 16 6 2.4137 -1.0046 -4.7523 17 6 1.7792 0.0889 -5.2502 18 6 1.1727 1.0043 -4.3698 19 6 1.2166 0.8055 -3.0388 20 7 1.8538 -0.2912 -2.5150 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 3.0284 1.4118 0.0004 25 1 1.6442 1.9013 -0.7814 26 1 0.7082 1.1608 3.4844 27 1 3.0286 -2.4395 -0.3702 28 1 3.5550 -3.0620 -2.9176 29 1 2.8816 -1.7145 -5.4183 30 1 1.7398 0.2545 -6.3167 31 1 0.6722 1.8760 -4.7649 32 1 0.7460 1.5171 -2.3766 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084363312.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:16 Heat of formation + Delta-G solvation = 81.256839 kcal Electronic energy + Delta-G solvation = -15986.019123 eV Core-core repulsion = 13526.711913 eV Total energy + Delta-G solvation = -2459.307210 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.57699 -36.53430 -34.98801 -32.50729 -31.30148 -29.24472 -27.79445 -26.59816 -25.18271 -22.96902 -21.66266 -20.36764 -19.55946 -16.47877 -16.05876 -15.85473 -15.13264 -14.71828 -14.57527 -14.31506 -13.55765 -13.46922 -12.75342 -12.33593 -12.02049 -11.60944 -11.38000 -11.14291 -10.97411 -10.87661 -10.61931 -10.45424 -10.25571 -9.93668 -9.85688 -8.94883 -8.41471 -7.84553 -7.27477 -6.59288 -5.88907 -4.05042 1.29956 1.93730 3.33014 3.35808 3.40294 3.45148 3.70728 3.98289 4.45802 4.95988 5.13204 5.30989 5.36199 5.40799 5.59068 6.02182 6.04716 6.16911 6.25852 6.42952 6.45582 6.61435 6.71798 6.90961 6.93336 7.11407 7.17462 7.58736 7.63987 7.77392 7.89594 8.07840 8.28170 8.59279 8.90387 9.06641 9.63468 11.12383 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043946 B = 0.008219 C = 0.007259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.986951 B = 3405.792813 C = 3856.295491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.309 3.691 3 N -0.803 5.803 4 C -0.522 4.522 5 H 0.063 0.937 6 C 0.085 3.915 7 N -0.847 5.847 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.001 4.001 13 C -0.141 4.141 14 C -0.209 4.209 15 C 0.006 3.994 16 C -0.083 4.083 17 C -0.145 4.145 18 C -0.167 4.167 19 C 0.063 3.937 20 N -0.349 5.349 21 H 0.033 0.967 22 H 0.097 0.903 23 H 0.001 0.999 24 H 0.323 0.677 25 H 0.290 0.710 26 H 0.255 0.745 27 H 0.147 0.853 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 -0.774 -11.271 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.217 3.783 3 N -0.330 5.330 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.122 4.122 7 N -0.481 5.481 8 Si 0.715 3.285 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.114 4.114 13 C -0.163 4.163 14 C -0.235 4.235 15 C -0.097 4.097 16 C -0.102 4.102 17 C -0.165 4.165 18 C -0.188 4.188 19 C -0.058 4.058 20 N -0.014 5.014 21 H 0.052 0.948 22 H 0.116 0.884 23 H 0.020 0.980 24 H 0.134 0.866 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.165 0.835 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.153 0.847 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.311 -0.339 -10.395 10.405 hybrid contribution 0.770 -0.676 -0.220 1.048 sum 1.080 -1.015 -10.615 10.718 Atomic orbital electron populations 1.21823 0.96601 0.99427 1.00567 1.17191 0.91772 0.83799 0.85551 1.59292 1.11932 1.14687 1.47053 1.20819 1.33911 1.12383 0.89000 0.91904 1.24891 0.94409 0.94365 0.98493 1.70020 1.34337 1.21282 1.22504 0.86698 0.78647 0.80137 0.83026 1.20746 1.21339 1.19936 1.22920 1.05301 0.99135 0.84006 1.20879 1.02045 0.97049 0.96310 1.21048 1.08938 1.00479 0.93026 1.18797 1.05988 0.94508 0.90415 1.20457 0.99722 0.98121 0.91876 1.20737 1.00883 0.95508 0.99373 1.20513 1.04799 1.01775 0.91686 1.21721 0.97966 0.90520 0.95577 1.41738 1.36030 1.16230 1.07443 0.94777 0.88421 0.97988 0.86558 0.89859 0.93462 0.83496 0.84861 0.85179 0.85941 0.84688 0.82711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.46 37.16 0.31 -2.70 16 2 C 0.31 7.39 0.62 -133.90 -0.08 7.31 16 3 N -0.80 -18.52 8.17 -1.14 -0.01 -18.52 16 4 C -0.52 -13.75 7.93 -34.44 -0.27 -14.02 16 5 H 0.06 1.64 5.62 -52.49 -0.29 1.34 16 6 C 0.08 2.26 5.23 -17.82 -0.09 2.17 16 7 N -0.85 -23.31 10.80 55.43 0.60 -22.71 16 8 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.00 -0.02 5.68 -81.59 -0.46 -0.48 16 13 C -0.14 -3.01 9.80 -39.99 -0.39 -3.40 16 14 C -0.21 -3.95 10.98 -38.94 -0.43 -4.38 16 15 C 0.01 0.11 6.74 -84.03 -0.57 -0.46 16 16 C -0.08 -1.25 10.11 -39.35 -0.40 -1.65 16 17 C -0.14 -1.97 10.07 -39.48 -0.40 -2.37 16 18 C -0.17 -2.36 9.97 -39.91 -0.40 -2.76 16 19 C 0.06 1.06 9.52 -16.41 -0.16 0.91 16 20 N -0.35 -6.87 2.95 -56.65 -0.17 -7.04 16 21 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.10 2.57 6.07 -51.93 -0.32 2.25 16 23 H 0.00 0.02 6.61 -51.93 -0.34 -0.32 16 24 H 0.32 7.42 8.98 -39.29 -0.35 7.06 16 25 H 0.29 5.98 6.56 -39.29 -0.26 5.72 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.15 3.11 6.36 -52.49 -0.33 2.78 16 28 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 29 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.14 1.48 8.06 -52.48 -0.42 1.05 16 32 H 0.16 2.52 5.58 -52.49 -0.29 2.23 16 LS Contribution 262.36 15.07 3.95 3.95 Total: -1.00 -28.82 262.36 -7.42 -36.24 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -3.44 Total: 14.17 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -3.33 Total: -21.84 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.42 Total: -48.27 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.82 -7.42 -36.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363312.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.499 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds