Wall clock time and date at job start Mon Mar 30 2020 02:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.46876 * 2 1 4 4 C 1.50696 * 109.47226 * 239.99841 * 2 1 3 5 5 H 1.08004 * 119.99645 * 240.00083 * 4 2 1 6 6 C 1.37880 * 120.00058 * 60.00339 * 4 2 1 7 7 N 1.31510 * 120.00060 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99724 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47439 * 89.99670 * 8 6 4 10 10 H 1.48501 * 109.46862 * 209.99548 * 8 6 4 11 11 H 1.48500 * 109.47263 * 329.99358 * 8 6 4 12 12 C 1.50697 * 109.46836 * 119.99791 * 2 1 3 13 13 C 1.35481 * 125.51119 * 120.07840 * 12 2 1 14 14 C 1.39780 * 107.98153 * 180.02562 * 13 12 2 15 15 C 1.38415 * 107.05796 * 359.91663 * 14 13 12 16 16 C 1.41099 * 132.46380 * 179.97438 * 15 14 13 17 17 C 1.35875 * 119.29263 * 180.02562 * 16 15 14 18 18 C 1.40735 * 119.69985 * 0.02562 * 17 16 15 19 19 C 1.34644 * 120.55652 * 0.02562 * 18 17 16 20 20 N 1.36306 * 125.51500 * 299.99644 * 12 2 1 21 21 H 1.09001 * 109.47338 * 300.00055 * 1 2 3 22 22 H 1.08999 * 109.46998 * 60.00275 * 1 2 3 23 23 H 1.09002 * 109.46985 * 179.97438 * 1 2 3 24 24 H 1.00898 * 111.00657 * 56.04406 * 3 2 1 25 25 H 1.00903 * 110.99966 * 179.97438 * 3 2 1 26 26 H 0.96994 * 120.00268 * 180.02562 * 7 6 4 27 27 H 1.07997 * 126.01020 * 359.96236 * 13 12 2 28 28 H 1.08000 * 126.47321 * 179.90394 * 14 13 12 29 29 H 1.07993 * 120.35034 * 0.27897 * 16 15 14 30 30 H 1.08000 * 120.14679 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.72077 * 179.97438 * 18 17 16 32 32 H 1.07994 * 119.65485 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3429 -2.1619 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6295 -1.7584 -3.7120 12 6 2.0323 -0.7104 1.2305 13 6 2.8157 -1.8157 1.2364 14 6 3.0605 -2.1640 2.5678 15 6 2.4039 -1.2360 3.3575 16 6 2.2939 -1.0831 4.7559 17 6 1.5643 -0.0519 5.2565 18 6 0.9304 0.8454 4.3769 19 6 1.0406 0.6903 3.0440 20 7 1.7732 -0.3439 2.5175 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6441 1.9013 0.7813 25 1 3.0283 1.4119 0.0004 26 1 0.7083 1.1608 -3.4844 27 1 3.1851 -2.3368 0.3656 28 1 3.6503 -2.9995 2.9148 29 1 2.7877 -1.7758 5.4211 30 1 1.4705 0.0779 6.3245 31 1 0.3500 1.6649 4.7744 32 1 0.5478 1.3872 2.3824 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084363316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:17 Heat of formation + Delta-G solvation = 81.105015 kcal Electronic energy + Delta-G solvation = -15985.583348 eV Core-core repulsion = 13526.269554 eV Total energy + Delta-G solvation = -2459.313794 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.57373 -36.53351 -34.98170 -32.49991 -31.30902 -29.23839 -27.77601 -26.62183 -25.18330 -22.96146 -21.66325 -20.35769 -19.55761 -16.47507 -16.05967 -15.83836 -15.12319 -14.71633 -14.57648 -14.28808 -13.58498 -13.48724 -12.73345 -12.34453 -12.03668 -11.61436 -11.39524 -11.12644 -10.94911 -10.89368 -10.59298 -10.45746 -10.25195 -9.92745 -9.85276 -8.95268 -8.40721 -7.85060 -7.27662 -6.58722 -5.88894 -4.04947 1.30344 1.93921 3.33062 3.35933 3.40379 3.45374 3.70685 3.98552 4.45843 4.97239 5.13531 5.32039 5.36117 5.41054 5.59442 6.03030 6.04861 6.16478 6.26166 6.43154 6.45781 6.61607 6.70963 6.89915 6.93091 7.11725 7.16808 7.59232 7.64464 7.77809 7.89885 8.08430 8.27997 8.59439 8.91171 9.06974 9.63576 11.12454 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.044013 B = 0.008218 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.024812 B = 3406.196694 C = 3858.877256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.309 3.691 3 N -0.802 5.802 4 C -0.522 4.522 5 H 0.063 0.937 6 C 0.085 3.915 7 N -0.847 5.847 8 Si 0.887 3.113 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.001 4.001 13 C -0.141 4.141 14 C -0.210 4.210 15 C 0.006 3.994 16 C -0.083 4.083 17 C -0.144 4.144 18 C -0.168 4.168 19 C 0.063 3.937 20 N -0.349 5.349 21 H 0.002 0.998 22 H 0.097 0.903 23 H 0.033 0.967 24 H 0.290 0.710 25 H 0.323 0.677 26 H 0.255 0.745 27 H 0.147 0.853 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.692 -0.899 11.280 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.217 3.783 3 N -0.328 5.328 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.122 4.122 7 N -0.481 5.481 8 Si 0.715 3.285 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.114 4.114 13 C -0.163 4.163 14 C -0.235 4.235 15 C -0.097 4.097 16 C -0.102 4.102 17 C -0.165 4.165 18 C -0.188 4.188 19 C -0.057 4.057 20 N -0.014 5.014 21 H 0.021 0.979 22 H 0.116 0.884 23 H 0.052 0.948 24 H 0.101 0.899 25 H 0.134 0.866 26 H 0.065 0.935 27 H 0.165 0.835 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.153 0.847 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.071 -0.470 10.402 10.413 hybrid contribution 0.740 -0.704 0.221 1.045 sum 0.811 -1.174 10.623 10.718 Atomic orbital electron populations 1.21852 0.96703 0.99406 1.00614 1.17178 0.91749 0.83840 0.85547 1.59303 1.11925 1.14571 1.46988 1.20818 1.33950 1.12352 0.89008 0.91907 1.24888 0.94444 0.94331 0.98492 1.70013 1.34399 1.21224 1.22503 0.86701 0.79337 0.79401 0.83072 1.20782 1.21317 1.19933 1.22923 1.04113 1.00453 0.83928 1.20884 1.01506 0.97591 0.96300 1.21047 1.07721 1.01805 0.92962 1.18800 1.04581 0.95906 0.90392 1.20456 0.99424 0.98508 0.91841 1.20736 1.00182 0.96176 0.99363 1.20510 1.04488 1.02185 0.91666 1.21738 0.96573 0.91871 0.95512 1.41747 1.33226 1.19062 1.07364 0.97903 0.88420 0.94825 0.89880 0.86557 0.93461 0.83497 0.84870 0.85187 0.85948 0.84703 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.42 37.16 0.31 -2.73 16 2 C 0.31 7.38 0.62 -133.91 -0.08 7.30 16 3 N -0.80 -18.49 8.17 -1.14 -0.01 -18.50 16 4 C -0.52 -13.75 7.93 -34.44 -0.27 -14.03 16 5 H 0.06 1.64 5.59 -52.48 -0.29 1.34 16 6 C 0.08 2.26 5.23 -17.82 -0.09 2.17 16 7 N -0.85 -23.31 10.80 55.43 0.60 -22.71 16 8 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.00 -0.03 5.70 -81.59 -0.47 -0.50 16 13 C -0.14 -3.01 9.81 -39.99 -0.39 -3.40 16 14 C -0.21 -3.96 10.98 -38.94 -0.43 -4.38 16 15 C 0.01 0.12 6.74 -84.02 -0.57 -0.45 16 16 C -0.08 -1.26 10.11 -39.34 -0.40 -1.66 16 17 C -0.14 -1.97 10.07 -39.49 -0.40 -2.36 16 18 C -0.17 -2.38 9.97 -39.91 -0.40 -2.78 16 19 C 0.06 1.08 9.43 -16.41 -0.15 0.92 16 20 N -0.35 -6.86 2.95 -56.65 -0.17 -7.03 16 21 H 0.00 0.04 6.02 -51.93 -0.31 -0.27 16 22 H 0.10 2.56 6.07 -51.93 -0.32 2.25 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.29 6.02 7.08 -39.29 -0.28 5.74 16 25 H 0.32 7.40 8.98 -39.29 -0.35 7.05 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.15 3.11 6.32 -52.49 -0.33 2.78 16 28 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 29 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.16 2.54 5.55 -52.49 -0.29 2.25 16 LS Contribution 262.10 15.07 3.95 3.95 Total: -1.00 -28.80 262.10 -7.41 -36.20 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -3.42 Total: 14.23 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -3.34 Total: -21.90 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.42 Total: -48.23 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.80 -7.41 -36.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.310 kcal (2) G-P(sol) polarization free energy of solvation -28.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds