Wall clock time and date at job start Mon Mar 30 2020 02:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.46876 * 2 1 4 4 C 1.50696 * 109.47226 * 239.99841 * 2 1 3 5 5 H 1.08004 * 119.99645 * 240.00083 * 4 2 1 6 6 C 1.37880 * 120.00058 * 60.00339 * 4 2 1 7 7 N 1.31510 * 120.00060 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99724 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47439 * 89.99670 * 8 6 4 10 10 H 1.48501 * 109.46862 * 209.99548 * 8 6 4 11 11 H 1.48500 * 109.47263 * 329.99358 * 8 6 4 12 12 C 1.50697 * 109.46836 * 119.99791 * 2 1 3 13 13 C 1.35481 * 125.51119 * 120.07840 * 12 2 1 14 14 C 1.39780 * 107.98153 * 180.02562 * 13 12 2 15 15 C 1.38415 * 107.05796 * 359.91663 * 14 13 12 16 16 C 1.41099 * 132.46380 * 179.97438 * 15 14 13 17 17 C 1.35875 * 119.29263 * 180.02562 * 16 15 14 18 18 C 1.40735 * 119.69985 * 0.02562 * 17 16 15 19 19 C 1.34644 * 120.55652 * 0.02562 * 18 17 16 20 20 N 1.36306 * 125.51500 * 299.99644 * 12 2 1 21 21 H 1.09001 * 109.47338 * 300.00055 * 1 2 3 22 22 H 1.08999 * 109.46998 * 60.00275 * 1 2 3 23 23 H 1.09002 * 109.46985 * 179.97438 * 1 2 3 24 24 H 1.00898 * 111.00657 * 56.04406 * 3 2 1 25 25 H 1.00903 * 110.99966 * 179.97438 * 3 2 1 26 26 H 0.96994 * 120.00268 * 180.02562 * 7 6 4 27 27 H 1.07997 * 126.01020 * 359.96236 * 13 12 2 28 28 H 1.08000 * 126.47321 * 179.90394 * 14 13 12 29 29 H 1.07993 * 120.35034 * 0.27897 * 16 15 14 30 30 H 1.08000 * 120.14679 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.72077 * 179.97438 * 18 17 16 32 32 H 1.07994 * 119.65485 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3429 -2.1619 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6295 -1.7584 -3.7120 12 6 2.0323 -0.7104 1.2305 13 6 2.8157 -1.8157 1.2364 14 6 3.0605 -2.1640 2.5678 15 6 2.4039 -1.2360 3.3575 16 6 2.2939 -1.0831 4.7559 17 6 1.5643 -0.0519 5.2565 18 6 0.9304 0.8454 4.3769 19 6 1.0406 0.6903 3.0440 20 7 1.7732 -0.3439 2.5175 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6441 1.9013 0.7813 25 1 3.0283 1.4119 0.0004 26 1 0.7083 1.1608 -3.4844 27 1 3.1851 -2.3368 0.3656 28 1 3.6503 -2.9995 2.9148 29 1 2.7877 -1.7758 5.4211 30 1 1.4705 0.0779 6.3245 31 1 0.3500 1.6649 4.7744 32 1 0.5478 1.3872 2.3824 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:17 Heat of formation + Delta-G solvation = 63.731693 kcal Electronic energy + Delta-G solvation = -15986.336712 eV Core-core repulsion = 13526.269554 eV Total energy + Delta-G solvation = -2460.067157 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.97951 -38.01341 -36.59886 -34.00818 -33.10352 -30.63839 -29.52784 -28.13282 -27.14755 -24.28834 -23.16036 -21.84456 -21.18563 -18.07232 -17.81706 -17.15914 -16.48157 -16.35312 -16.14885 -15.92469 -15.19210 -14.97063 -14.53133 -13.93531 -13.47540 -13.25459 -12.81237 -12.78929 -12.62372 -12.52394 -12.30090 -12.16526 -11.95600 -11.76670 -11.21235 -10.88987 -10.43930 -9.34470 -9.00776 -7.99407 -7.91250 -6.12162 0.08068 0.63555 1.45106 1.47113 1.55232 2.00745 2.15446 2.51049 2.73430 3.30108 3.72935 4.03728 4.07253 4.25783 4.30419 4.35492 4.51852 4.79518 4.87317 4.96861 5.07421 5.13594 5.20821 5.28525 5.36301 5.52856 5.64062 5.79586 5.96614 6.14171 6.21113 6.36064 6.56564 6.73114 7.03867 7.20939 7.58839 9.08484 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.044013 B = 0.008218 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.024812 B = 3406.196694 C = 3858.877256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.309 3.691 3 N -0.809 5.809 4 C -0.537 4.537 5 H 0.056 0.944 6 C 0.042 3.958 7 N -0.871 5.871 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.039 4.039 13 C -0.161 4.161 14 C -0.228 4.228 15 C 0.005 3.995 16 C -0.096 4.096 17 C -0.128 4.128 18 C -0.144 4.144 19 C 0.022 3.978 20 N -0.350 5.350 21 H 0.023 0.977 22 H 0.072 0.928 23 H 0.020 0.980 24 H 0.303 0.697 25 H 0.320 0.680 26 H 0.253 0.747 27 H 0.133 0.867 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.174 0.826 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 -0.723 14.134 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.218 3.782 3 N -0.335 5.335 4 C -0.576 4.576 5 H 0.074 0.926 6 C -0.161 4.161 7 N -0.507 5.507 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.151 4.151 13 C -0.183 4.183 14 C -0.253 4.253 15 C -0.100 4.100 16 C -0.115 4.115 17 C -0.148 4.148 18 C -0.164 4.164 19 C -0.097 4.097 20 N -0.015 5.015 21 H 0.041 0.959 22 H 0.090 0.910 23 H 0.039 0.961 24 H 0.115 0.885 25 H 0.131 0.869 26 H 0.063 0.937 27 H 0.151 0.849 28 H 0.175 0.825 29 H 0.181 0.819 30 H 0.185 0.815 31 H 0.192 0.808 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.061 -0.292 13.259 13.263 hybrid contribution 0.692 -0.703 -0.428 1.075 sum 0.753 -0.995 12.832 12.892 Atomic orbital electron populations 1.21678 0.97221 0.98336 1.00248 1.16914 0.91276 0.84092 0.85968 1.59179 1.11713 1.14739 1.47873 1.21149 1.33597 1.12379 0.90473 0.92623 1.25509 0.94768 0.95035 1.00830 1.70136 1.35426 1.22371 1.22722 0.85811 0.78773 0.78351 0.80036 1.20537 1.21206 1.19784 1.22384 1.06554 1.01657 0.84554 1.20900 1.02213 0.97941 0.97265 1.21264 1.08946 1.03185 0.91866 1.19401 1.03450 0.95087 0.92019 1.20910 1.00234 1.00007 0.90303 1.21326 0.97588 0.94330 1.01551 1.21113 1.02517 1.02375 0.90387 1.22057 0.98349 0.92318 0.97024 1.41755 1.33373 1.19741 1.06633 0.95853 0.90973 0.96125 0.88502 0.86880 0.93738 0.84915 0.82479 0.81943 0.81476 0.80839 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.42 71.98 0.61 -5.12 16 2 C 0.31 15.23 0.62 2.03 0.00 15.23 16 3 N -0.81 -38.15 8.17 -157.52 -1.29 -39.44 16 4 C -0.54 -29.26 7.93 25.60 0.20 -29.06 16 5 H 0.06 3.04 5.59 -2.91 -0.02 3.02 16 6 C 0.04 2.31 5.23 84.66 0.44 2.75 16 7 N -0.87 -49.14 10.80 21.45 0.23 -48.90 16 8 Si 0.94 43.68 29.54 68.60 2.03 45.70 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 C -0.04 -1.75 5.70 41.23 0.24 -1.51 16 13 C -0.16 -7.07 9.81 22.01 0.22 -6.86 16 14 C -0.23 -8.49 10.98 22.69 0.25 -8.25 16 15 C 0.01 0.18 6.74 38.95 0.26 0.44 16 16 C -0.10 -2.50 10.11 22.42 0.23 -2.27 16 17 C -0.13 -2.76 10.07 22.33 0.22 -2.54 16 18 C -0.14 -3.43 9.97 22.06 0.22 -3.21 16 19 C 0.02 0.70 9.43 83.02 0.78 1.48 16 20 N -0.35 -13.52 2.95 -333.13 -0.98 -14.50 16 21 H 0.02 0.99 6.02 -2.39 -0.01 0.98 16 22 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 23 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.30 12.73 7.08 -89.70 -0.64 12.09 16 25 H 0.32 15.12 8.98 -89.69 -0.81 14.32 16 26 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 27 H 0.13 5.97 6.32 -2.91 -0.02 5.95 16 28 H 0.16 4.82 8.06 -2.91 -0.02 4.79 16 29 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.15 4.83 5.55 -2.91 -0.02 4.82 16 Total: -1.00 -63.65 262.10 3.37 -60.28 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -0.28 Total: 35.76 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 3.67 Total: -38.89 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -2.04 Total: -102.84 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -63.65 3.37 -60.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.009 kcal (2) G-P(sol) polarization free energy of solvation -63.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds