Wall clock time and date at job start Mon Mar 30 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46891 * 109.47129 * 2 1 4 4 C 1.50703 * 109.47186 * 120.00602 * 2 1 3 5 5 H 1.07999 * 119.99989 * 119.99580 * 4 2 1 6 6 C 1.37871 * 119.99429 * 299.99335 * 4 2 1 7 7 N 1.31511 * 120.00757 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99691 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46813 * 90.00124 * 8 6 4 10 10 H 1.48490 * 109.47339 * 210.00290 * 8 6 4 11 11 H 1.48498 * 109.47321 * 330.00827 * 8 6 4 12 12 C 1.50703 * 109.46519 * 240.00002 * 2 1 3 13 13 C 1.36670 * 120.11588 * 120.00098 * 12 2 1 14 14 C 1.38789 * 120.52659 * 179.97438 * 13 12 2 15 15 C 1.37785 * 120.66929 * 0.03305 * 14 13 12 16 16 C 1.39088 * 119.77670 * 359.97348 * 15 14 13 17 17 N 1.37696 * 133.51355 * 179.97438 * 16 15 14 18 18 H 0.96993 * 125.06693 * 0.05999 * 17 16 15 19 19 C 1.36841 * 109.86869 * 179.80357 * 17 16 15 20 20 C 1.34228 * 109.94158 * 0.38290 * 19 17 16 21 21 C 1.39589 * 120.12271 * 300.00044 * 12 2 1 22 22 H 1.08998 * 109.47710 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46850 * 299.99777 * 1 2 3 24 24 H 1.09003 * 109.47299 * 59.99550 * 1 2 3 25 25 H 1.00904 * 111.00150 * 180.02562 * 3 2 1 26 26 H 1.00901 * 111.00310 * 303.95754 * 3 2 1 27 27 H 0.96993 * 120.00623 * 179.97438 * 7 6 4 28 28 H 1.08003 * 119.73333 * 0.02562 * 13 12 2 29 29 H 1.07997 * 119.66021 * 180.02562 * 14 13 12 30 30 H 1.07996 * 120.11052 * 179.97438 * 15 14 13 31 31 H 1.08006 * 125.02684 * 180.27912 * 19 17 16 32 32 H 1.08002 * 126.50417 * 179.89956 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.6298 -0.5462 4.4122 10 1 1.3433 -0.9495 5.1119 11 1 2.4859 -2.5664 3.7118 12 6 2.0322 -0.7104 -1.2305 13 6 2.8180 -0.0486 -2.1318 14 6 3.2856 -0.6947 -3.2676 15 6 2.9662 -2.0133 -3.5078 16 6 2.1677 -2.7063 -2.6040 17 7 1.6844 -3.9949 -2.5600 18 1 1.8533 -4.6766 -3.2290 19 6 0.9348 -4.1720 -1.4290 20 6 0.8983 -3.0324 -0.7207 21 6 1.6964 -2.0468 -1.4539 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 3.0283 1.4118 -0.0004 26 1 1.6441 1.9013 -0.7813 27 1 0.7084 1.1607 3.4844 28 1 3.0779 0.9853 -1.9583 29 1 3.9060 -0.1584 -3.9703 30 1 3.3347 -2.5071 -4.3947 31 1 0.4437 -5.0922 -1.1485 32 1 0.3823 -2.8735 0.2146 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363320.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:19 Heat of formation + Delta-G solvation = 47.745952 kcal Electronic energy + Delta-G solvation = -16047.680767 eV Core-core repulsion = 13586.920415 eV Total energy + Delta-G solvation = -2460.760351 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.97832 -38.67884 -36.41457 -33.63414 -32.10841 -30.14930 -29.31832 -28.90236 -27.10163 -23.96477 -22.35896 -21.67432 -20.91685 -18.61769 -17.80902 -16.90947 -16.49925 -16.19365 -15.81166 -15.20719 -15.10899 -14.81376 -14.22564 -13.83724 -13.45575 -13.24360 -12.87646 -12.78195 -12.50915 -12.42879 -12.26199 -12.04526 -11.91130 -11.22126 -10.97941 -10.40113 -10.18781 -8.96129 -8.83080 -8.34506 -7.80838 -6.02585 0.44890 0.88417 1.43791 1.46316 1.54625 2.01763 2.43723 2.52797 3.19764 3.36195 4.07047 4.23202 4.30950 4.40064 4.47506 4.66099 4.73106 4.97816 4.99961 5.12364 5.24669 5.30634 5.43246 5.50065 5.72849 5.81054 5.87549 5.94493 6.07072 6.11998 6.44262 6.50615 6.82822 6.94049 7.20761 7.37765 7.66687 9.15744 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.010351 C = 0.008686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.451424 B = 2704.341658 C = 3222.741838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.275 3.725 3 N -0.817 5.817 4 C -0.513 4.513 5 H 0.034 0.966 6 C 0.042 3.958 7 N -0.870 5.870 8 Si 0.934 3.066 9 H -0.284 1.284 10 H -0.285 1.285 11 H -0.275 1.275 12 C -0.050 4.050 13 C -0.191 4.191 14 C -0.098 4.098 15 C -0.154 4.154 16 C 0.075 3.925 17 N -0.586 5.586 18 H 0.429 0.571 19 C 0.048 3.952 20 C -0.216 4.216 21 C -0.123 4.123 22 H 0.037 0.963 23 H 0.063 0.937 24 H 0.010 0.990 25 H 0.321 0.679 26 H 0.309 0.691 27 H 0.251 0.749 28 H 0.118 0.882 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.207 0.793 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.707 -8.328 -11.378 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.184 3.816 3 N -0.345 5.345 4 C -0.552 4.552 5 H 0.052 0.948 6 C -0.161 4.161 7 N -0.507 5.507 8 Si 0.761 3.239 9 H -0.210 1.210 10 H -0.210 1.210 11 H -0.200 1.200 12 C -0.053 4.053 13 C -0.210 4.210 14 C -0.117 4.117 15 C -0.174 4.174 16 C -0.032 4.032 17 N -0.192 5.192 18 H 0.268 0.732 19 C -0.077 4.077 20 C -0.241 4.241 21 C -0.128 4.128 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.029 0.971 25 H 0.133 0.867 26 H 0.121 0.879 27 H 0.060 0.940 28 H 0.135 0.865 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.224 0.776 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.222 -8.244 -10.595 13.480 hybrid contribution 0.741 -0.651 0.077 0.989 sum 1.963 -8.896 -10.517 13.914 Atomic orbital electron populations 1.21617 0.97082 0.99120 0.99156 1.17300 0.91595 0.84357 0.88375 1.59011 1.11602 1.15313 1.48568 1.20883 1.32501 1.11175 0.90636 0.94754 1.25468 0.95022 0.95112 1.00495 1.70152 1.35692 1.22506 1.22312 0.85967 0.77983 0.79191 0.80749 1.21001 1.21046 1.20004 1.20806 0.94568 0.93369 0.96554 1.20707 1.02910 1.00755 0.96636 1.21014 0.99541 0.94124 0.96992 1.20178 1.02331 0.94881 1.00027 1.18571 1.00650 0.86356 0.97666 1.41627 1.45349 1.09929 1.22291 0.73182 1.22223 0.98016 1.00075 0.87399 1.21895 1.06702 0.93517 1.01961 1.19295 1.02766 0.94372 0.96413 0.94428 0.91780 0.97140 0.86654 0.87893 0.93977 0.86458 0.83450 0.83713 0.77618 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.65 8.32 71.98 0.60 -5.05 16 2 C 0.28 13.78 0.59 2.04 0.00 13.78 16 3 N -0.82 -39.30 7.48 -157.52 -1.18 -40.48 16 4 C -0.51 -28.47 7.41 25.60 0.19 -28.28 16 5 H 0.03 1.99 7.61 -2.91 -0.02 1.97 16 6 C 0.04 2.34 5.23 84.65 0.44 2.78 16 7 N -0.87 -50.21 10.80 21.44 0.23 -49.97 16 8 Si 0.93 44.59 29.54 68.60 2.03 46.62 16 9 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 C -0.05 -2.25 4.71 -19.90 -0.09 -2.34 16 13 C -0.19 -7.36 9.00 22.03 0.20 -7.16 16 14 C -0.10 -3.07 10.01 22.29 0.22 -2.85 16 15 C -0.15 -4.59 10.08 22.37 0.23 -4.37 16 16 C 0.08 2.57 7.28 39.03 0.28 2.85 16 17 N -0.59 -15.39 6.07 -187.60 -1.14 -16.53 16 18 H 0.43 7.37 8.96 -92.71 -0.83 6.54 16 19 C 0.05 1.37 11.81 83.00 0.98 2.35 16 20 C -0.22 -8.45 9.29 23.51 0.22 -8.23 16 21 C -0.12 -5.20 5.50 -20.20 -0.11 -5.31 16 22 H 0.04 1.84 5.78 -2.39 -0.01 1.83 16 23 H 0.06 3.58 6.07 -2.38 -0.01 3.56 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.32 14.96 8.03 -89.69 -0.72 14.24 16 26 H 0.31 13.44 8.25 -89.69 -0.74 12.70 16 27 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 28 H 0.12 4.28 6.14 -2.91 -0.02 4.26 16 29 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 30 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.21 3.78 8.06 -2.91 -0.02 3.75 16 32 H 0.13 5.46 7.14 -2.91 -0.02 5.44 16 Total: -1.00 -67.23 263.05 1.98 -65.25 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -1.12 Total: 36.95 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 3.16 Total: -41.84 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -2.09 Total: -106.98 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.23 1.98 -65.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363320.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.999 kcal (2) G-P(sol) polarization free energy of solvation -67.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds