Wall clock time and date at job start Mon Mar 30 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46895 * 109.47556 * 2 1 4 4 C 1.50707 * 109.47044 * 240.00018 * 2 1 3 5 5 H 1.07997 * 120.00189 * 240.00349 * 4 2 1 6 6 C 1.37879 * 119.99848 * 59.99993 * 4 2 1 7 7 N 1.31512 * 119.99933 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99855 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47309 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47262 * 120.00295 * 8 6 4 11 11 H 1.48494 * 109.47495 * 240.00330 * 8 6 4 12 12 C 1.50696 * 109.47139 * 120.00624 * 2 1 3 13 13 C 1.36660 * 120.11740 * 239.99907 * 12 2 1 14 14 C 1.38795 * 120.52817 * 180.02562 * 13 12 2 15 15 C 1.37779 * 120.66827 * 359.96957 * 14 13 12 16 16 C 1.39092 * 119.77958 * 0.02562 * 15 14 13 17 17 N 1.37691 * 133.51475 * 179.97438 * 16 15 14 18 18 H 0.96995 * 125.06313 * 0.03285 * 17 16 15 19 19 C 1.36832 * 109.87327 * 180.02562 * 17 16 15 20 20 C 1.34234 * 109.93820 * 0.02562 * 19 17 16 21 21 C 1.39596 * 120.12240 * 60.01463 * 12 2 1 22 22 H 1.09004 * 109.47144 * 300.00099 * 1 2 3 23 23 H 1.09004 * 109.47209 * 59.99694 * 1 2 3 24 24 H 1.09001 * 109.47640 * 179.97438 * 1 2 3 25 25 H 1.00901 * 111.00272 * 180.02562 * 3 2 1 26 26 H 1.00894 * 111.00104 * 303.95669 * 3 2 1 27 27 H 0.96996 * 120.00238 * 179.97438 * 7 6 4 28 28 H 1.08001 * 119.73483 * 0.02562 * 13 12 2 29 29 H 1.07999 * 119.66344 * 179.70368 * 14 13 12 30 30 H 1.08001 * 120.11280 * 179.97438 * 15 14 13 31 31 H 1.07993 * 125.03284 * 179.97438 * 19 17 16 32 32 H 1.07998 * 126.50412 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1676 -1.5865 -4.8166 11 1 3.1472 -0.1858 -4.8161 12 6 2.0323 -0.7105 1.2303 13 6 2.8181 -0.0488 2.1315 14 6 3.2859 -0.6950 3.2673 15 6 2.9666 -2.0137 3.5073 16 6 2.1681 -2.7066 2.6035 17 7 1.6856 -3.9955 2.5590 18 1 1.8544 -4.6771 3.2281 19 6 0.9324 -4.1714 1.4302 20 6 0.9000 -3.0331 0.7195 21 6 1.6969 -2.0471 1.4535 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.0284 1.4118 -0.0004 26 1 1.6442 1.9012 -0.7813 27 1 0.7094 1.1619 -3.4843 28 1 3.0772 0.9853 1.9586 29 1 3.9100 -0.1601 3.9678 30 1 3.3358 -2.5079 4.3938 31 1 0.4380 -5.0903 1.1519 32 1 0.3842 -2.8742 -0.2159 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084363324.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:21 Heat of formation + Delta-G solvation = 59.189202 kcal Electronic energy + Delta-G solvation = -16050.295258 eV Core-core repulsion = 13590.031124 eV Total energy + Delta-G solvation = -2460.264135 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.53580 -36.96359 -34.89972 -31.73587 -30.45880 -28.55090 -27.86725 -27.04793 -25.13636 -22.40735 -20.90074 -20.17740 -19.26290 -17.04514 -16.02077 -15.34902 -14.96564 -14.54582 -13.85819 -13.76216 -13.63715 -12.92760 -12.37365 -12.06035 -11.98803 -11.40415 -11.18963 -11.04309 -10.76580 -10.75881 -10.57795 -10.26345 -10.08858 -9.68719 -9.23602 -8.77248 -8.50373 -7.48265 -7.13073 -6.83696 -5.97667 -4.14179 1.91829 2.46115 3.24983 3.34271 3.39669 3.42360 3.70293 4.37918 4.79182 5.20423 5.43445 5.46115 5.72320 5.94943 6.04298 6.28423 6.38040 6.50189 6.64377 6.78392 6.90807 7.11640 7.16638 7.24123 7.40067 7.46779 7.58132 7.74086 7.89803 7.97785 8.06554 8.12162 8.28277 8.80822 9.04919 9.22254 9.56915 10.96362 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027388 B = 0.010329 C = 0.008683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.091630 B = 2710.265719 C = 3223.861837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.263 3.737 3 N -0.848 5.848 4 C -0.522 4.522 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.892 5.892 8 Si 0.891 3.109 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.025 3.975 13 C -0.160 4.160 14 C -0.096 4.096 15 C -0.168 4.168 16 C 0.088 3.912 17 N -0.606 5.606 18 H 0.405 0.595 19 C 0.008 3.992 20 C -0.162 4.162 21 C -0.097 4.097 22 H 0.014 0.986 23 H 0.082 0.918 24 H 0.037 0.963 25 H 0.313 0.687 26 H 0.355 0.645 27 H 0.262 0.738 28 H 0.129 0.871 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.159 0.841 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.155 -6.241 7.805 10.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.172 3.828 3 N -0.378 5.378 4 C -0.562 4.562 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.532 5.532 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 C 0.024 3.976 13 C -0.179 4.179 14 C -0.115 4.115 15 C -0.189 4.189 16 C -0.019 4.019 17 N -0.211 5.211 18 H 0.240 0.760 19 C -0.116 4.116 20 C -0.187 4.187 21 C -0.102 4.102 22 H 0.033 0.967 23 H 0.101 0.899 24 H 0.056 0.944 25 H 0.122 0.878 26 H 0.171 0.829 27 H 0.072 0.928 28 H 0.147 0.853 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.176 0.824 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.664 -6.160 8.407 10.443 hybrid contribution 0.859 -1.214 -1.544 2.144 sum 1.524 -7.374 6.863 10.188 Atomic orbital electron populations 1.21730 0.96235 0.99603 1.00523 1.17288 0.92052 0.85724 0.87759 1.59475 1.11304 1.15337 1.51700 1.21831 1.31109 1.12729 0.90563 0.92536 1.24956 0.94623 0.95093 0.98832 1.69703 1.36958 1.23077 1.23502 0.86542 0.78648 0.79818 0.83033 1.19848 1.21029 1.21170 1.19728 0.91827 0.90904 0.95138 1.20629 1.01599 1.00898 0.94822 1.20752 0.99607 0.93504 0.97683 1.19713 1.04403 0.95216 0.99594 1.18283 1.00411 0.85059 0.98103 1.41608 1.46688 1.10517 1.22256 0.76006 1.21642 1.00777 1.00057 0.89111 1.21929 1.04042 0.91688 1.01054 1.18984 1.02104 0.94194 0.94869 0.96679 0.89910 0.94423 0.87785 0.82876 0.92788 0.85340 0.87002 0.87771 0.82352 0.83347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 8.32 37.16 0.31 -2.71 16 2 C 0.26 6.46 0.69 -133.91 -0.09 6.37 16 3 N -0.85 -20.13 7.72 -1.14 -0.01 -20.13 16 4 C -0.52 -13.80 7.41 -34.44 -0.26 -14.05 16 5 H 0.06 1.57 7.61 -52.49 -0.40 1.17 16 6 C 0.07 1.74 5.22 -17.82 -0.09 1.65 16 7 N -0.89 -23.72 9.57 55.43 0.53 -23.19 16 8 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.03 0.58 4.71 -104.69 -0.49 0.08 16 13 C -0.16 -3.31 9.13 -39.95 -0.36 -3.67 16 14 C -0.10 -1.71 10.01 -39.54 -0.40 -2.11 16 15 C -0.17 -2.91 10.08 -39.43 -0.40 -3.30 16 16 C 0.09 1.65 7.28 -83.99 -0.61 1.04 16 17 N -0.61 -9.28 6.07 -10.65 -0.06 -9.35 16 18 H 0.40 4.60 8.96 -40.82 -0.37 4.23 16 19 C 0.01 0.12 11.81 -16.73 -0.20 -0.07 16 20 C -0.16 -3.21 9.29 -37.67 -0.35 -3.56 16 21 C -0.10 -2.09 5.50 -105.14 -0.58 -2.67 16 22 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 24 H 0.04 0.88 5.79 -51.93 -0.30 0.58 16 25 H 0.31 7.16 8.04 -39.29 -0.32 6.84 16 26 H 0.35 8.94 6.99 -39.29 -0.27 8.67 16 27 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.13 2.58 6.45 -52.49 -0.34 2.24 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.15 3.06 7.14 -52.49 -0.37 2.69 16 LS Contribution 261.35 15.07 3.94 3.94 Total: -1.00 -28.58 261.35 -7.66 -36.23 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -3.51 Total: 19.66 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -3.52 Total: -23.02 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.46 Total: -52.67 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.58 -7.66 -36.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363324.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.422 kcal (2) G-P(sol) polarization free energy of solvation -28.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds