Wall clock time and date at job start Mon Mar 30 2020 02:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47056 * 2 1 4 4 C 1.50694 * 109.47330 * 120.00603 * 2 1 3 5 5 H 1.08000 * 120.00491 * 119.99963 * 4 2 1 6 6 C 1.37883 * 119.99926 * 299.99495 * 4 2 1 7 7 N 1.31508 * 120.00342 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99781 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47315 * 89.99452 * 8 6 4 10 10 H 1.48502 * 109.47220 * 209.99687 * 8 6 4 11 11 H 1.48497 * 109.47360 * 329.99886 * 8 6 4 12 12 C 1.50705 * 109.46914 * 240.00432 * 2 1 3 13 13 C 1.38837 * 119.73273 * 270.01754 * 12 2 1 14 14 C 1.37748 * 120.66149 * 180.02562 * 13 12 2 15 15 C 1.39125 * 119.78246 * 359.96488 * 14 13 12 16 16 N 1.37688 * 133.50712 * 180.02562 * 15 14 13 17 17 H 0.97000 * 125.06758 * 359.97281 * 16 15 14 18 18 C 1.36835 * 109.87251 * 179.97438 * 16 15 14 19 19 C 1.34239 * 109.93059 * 0.26493 * 18 16 15 20 20 C 1.40668 * 119.33261 * 0.02562 * 15 14 13 21 21 C 1.36626 * 119.73696 * 89.99834 * 12 2 1 22 22 H 1.09004 * 109.46713 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46780 * 299.99600 * 1 2 3 24 24 H 1.08997 * 109.46738 * 59.99912 * 1 2 3 25 25 H 1.00906 * 110.99737 * 180.02562 * 3 2 1 26 26 H 1.00894 * 111.00354 * 303.95453 * 3 2 1 27 27 H 0.97003 * 120.00587 * 180.02562 * 7 6 4 28 28 H 1.07992 * 119.67030 * 359.97438 * 13 12 2 29 29 H 1.08008 * 120.10715 * 180.02562 * 14 13 12 30 30 H 1.08002 * 125.03193 * 179.97438 * 18 16 15 31 31 H 1.07993 * 126.50200 * 179.71624 * 19 18 16 32 32 H 1.07998 * 120.11870 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5564 8 14 0.6250 1.2789 2.6542 9 1 -0.8027 0.8726 2.6998 10 1 0.9761 1.9949 3.9069 11 1 0.8472 2.1764 1.4922 12 6 2.0323 -0.7103 -1.2306 13 6 2.2615 -2.0791 -1.1902 14 6 2.7210 -2.7475 -2.3035 15 6 2.9580 -2.0465 -3.4816 16 7 3.4056 -2.4152 -4.7304 17 1 3.6456 -3.3178 -4.9923 18 6 3.4614 -1.3187 -5.5471 19 6 3.0680 -0.2261 -4.8736 20 6 2.7241 -0.6598 -3.5173 21 6 2.2582 -0.0023 -2.3770 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.0284 1.4119 -0.0004 26 1 1.6442 1.9013 -0.7813 27 1 1.9028 -0.5286 4.4375 28 1 2.0784 -2.6250 -0.2766 29 1 2.8959 -3.8126 -2.2622 30 1 3.7797 -1.3298 -6.5791 31 1 3.0137 0.7812 -5.2591 32 1 2.0770 1.0621 -2.4012 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084363326.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:13 Heat of formation + Delta-G solvation = 75.333414 kcal Electronic energy + Delta-G solvation = -15724.307870 eV Core-core repulsion = 13264.743801 eV Total energy + Delta-G solvation = -2459.564069 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.82754 -37.76222 -34.52352 -31.92808 -31.34403 -28.83023 -28.30609 -27.64525 -25.04368 -22.58008 -21.49007 -20.49531 -19.03050 -17.65056 -16.57290 -15.53727 -15.12235 -14.45709 -14.12504 -14.03015 -13.59226 -13.32272 -12.94795 -12.75467 -12.31437 -12.03102 -11.86762 -11.41441 -11.00386 -10.72632 -10.44973 -10.13116 -9.98380 -9.52072 -9.36022 -8.93943 -8.44456 -7.60932 -7.34948 -7.01551 -5.95315 -4.04606 1.60733 2.20869 3.01974 3.39392 3.54094 3.68097 3.97673 4.47679 4.74833 5.00355 5.18894 5.36742 5.49118 5.70200 5.76147 5.84113 5.92348 6.06339 6.28642 6.38907 6.48117 6.64756 6.68333 6.72596 7.00525 7.10074 7.15741 7.19390 7.32952 7.66655 7.79505 7.83006 8.27916 8.43827 8.78988 9.03416 9.70538 11.14043 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.048279 B = 0.007591 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.817702 B = 3687.480831 C = 4021.338453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.244 3.756 3 N -0.831 5.831 4 C -0.516 4.516 5 H 0.077 0.923 6 C 0.084 3.916 7 N -0.902 5.902 8 Si 0.876 3.124 9 H -0.301 1.301 10 H -0.316 1.316 11 H -0.192 1.192 12 C -0.087 4.087 13 C -0.066 4.066 14 C -0.145 4.145 15 C 0.081 3.919 16 N -0.602 5.602 17 H 0.409 0.591 18 C 0.035 3.965 19 C -0.207 4.207 20 C -0.111 4.111 21 C -0.095 4.095 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.028 0.972 25 H 0.333 0.667 26 H 0.306 0.694 27 H 0.262 0.738 28 H 0.140 0.860 29 H 0.111 0.889 30 H 0.162 0.838 31 H 0.139 0.861 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 -0.718 -16.153 16.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.153 3.847 3 N -0.360 5.360 4 C -0.554 4.554 5 H 0.094 0.906 6 C -0.120 4.120 7 N -0.538 5.538 8 Si 0.707 3.293 9 H -0.230 1.230 10 H -0.246 1.246 11 H -0.114 1.114 12 C -0.090 4.090 13 C -0.086 4.086 14 C -0.166 4.166 15 C -0.025 4.025 16 N -0.206 5.206 17 H 0.245 0.755 18 C -0.091 4.091 19 C -0.233 4.233 20 C -0.116 4.116 21 C -0.114 4.114 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.147 0.853 26 H 0.119 0.881 27 H 0.071 0.929 28 H 0.158 0.842 29 H 0.129 0.871 30 H 0.180 0.820 31 H 0.157 0.843 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.615 -0.734 -15.330 15.360 hybrid contribution 0.098 -0.105 -0.804 0.817 sum 0.712 -0.839 -16.134 16.172 Atomic orbital electron populations 1.22057 0.96913 1.00780 0.99192 1.17814 0.91319 0.84732 0.90798 1.59971 1.13377 1.15058 1.47629 1.20844 1.33686 1.12823 0.88036 0.90555 1.25011 0.94994 0.96659 0.95327 1.69947 1.45183 1.40650 0.98055 0.87275 0.77961 0.85781 0.78305 1.23006 1.24568 1.11415 1.20651 0.97933 0.94474 0.95977 1.21139 0.95789 0.94677 0.96960 1.20085 1.06624 0.98821 0.91102 1.18267 1.03058 0.94562 0.86612 1.41700 1.59728 1.09662 1.09498 0.75515 1.21633 1.04960 0.86285 0.96219 1.21637 1.10314 0.98141 0.93250 1.19124 1.05496 0.92487 0.94454 1.20095 1.00898 0.99188 0.91243 0.92696 0.93013 0.95310 0.85348 0.88142 0.92890 0.84234 0.87060 0.82048 0.84324 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.24 37.16 0.31 -2.55 16 2 C 0.24 5.48 0.65 -133.90 -0.09 5.40 16 3 N -0.83 -17.25 5.13 -1.14 -0.01 -17.26 16 4 C -0.52 -13.98 8.14 -34.44 -0.28 -14.26 16 5 H 0.08 2.22 6.26 -52.49 -0.33 1.89 16 6 C 0.08 2.40 5.45 -17.82 -0.10 2.30 16 7 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 8 Si 0.88 22.14 23.86 -169.99 -4.06 18.08 16 9 H -0.30 -7.66 6.87 56.52 0.39 -7.28 16 10 H -0.32 -8.34 7.11 56.52 0.40 -7.94 16 11 H -0.19 -4.49 5.16 56.52 0.29 -4.19 16 12 C -0.09 -1.79 4.76 -104.98 -0.50 -2.29 16 13 C -0.07 -1.32 8.85 -39.54 -0.35 -1.67 16 14 C -0.15 -2.51 10.08 -39.43 -0.40 -2.91 16 15 C 0.08 1.34 7.28 -83.99 -0.61 0.72 16 16 N -0.60 -7.63 6.07 -10.65 -0.06 -7.69 16 17 H 0.41 3.80 8.96 -40.82 -0.37 3.43 16 18 C 0.03 0.41 11.82 -16.73 -0.20 0.21 16 19 C -0.21 -2.93 11.08 -37.67 -0.42 -3.34 16 20 C -0.11 -1.94 6.37 -105.14 -0.67 -2.61 16 21 C -0.10 -1.75 9.28 -39.64 -0.37 -2.12 16 22 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.33 6.85 8.98 -39.29 -0.35 6.50 16 26 H 0.31 5.53 7.34 -39.30 -0.29 5.24 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.14 2.95 6.39 -52.49 -0.34 2.62 16 29 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 30 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.11 1.89 6.42 -52.49 -0.34 1.55 16 LS Contribution 256.54 15.07 3.87 3.87 Total: -1.00 -32.05 256.54 -6.71 -38.75 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -3.55 Total: 14.28 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -3.67 Total: -23.12 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.70 Total: -51.86 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.06 Total: 18.08 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.05 -6.71 -38.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363326.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.086 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds