Wall clock time and date at job start Mon Mar 30 2020 02:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47056 * 2 1 4 4 C 1.50694 * 109.47330 * 120.00603 * 2 1 3 5 5 H 1.08000 * 120.00491 * 119.99963 * 4 2 1 6 6 C 1.37883 * 119.99926 * 299.99495 * 4 2 1 7 7 N 1.31508 * 120.00342 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99781 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47315 * 89.99452 * 8 6 4 10 10 H 1.48502 * 109.47220 * 209.99687 * 8 6 4 11 11 H 1.48497 * 109.47360 * 329.99886 * 8 6 4 12 12 C 1.50705 * 109.46914 * 240.00432 * 2 1 3 13 13 C 1.38837 * 119.73273 * 270.01754 * 12 2 1 14 14 C 1.37748 * 120.66149 * 180.02562 * 13 12 2 15 15 C 1.39125 * 119.78246 * 359.96488 * 14 13 12 16 16 N 1.37688 * 133.50712 * 180.02562 * 15 14 13 17 17 H 0.97000 * 125.06758 * 359.97281 * 16 15 14 18 18 C 1.36835 * 109.87251 * 179.97438 * 16 15 14 19 19 C 1.34239 * 109.93059 * 0.26493 * 18 16 15 20 20 C 1.40668 * 119.33261 * 0.02562 * 15 14 13 21 21 C 1.36626 * 119.73696 * 89.99834 * 12 2 1 22 22 H 1.09004 * 109.46713 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46780 * 299.99600 * 1 2 3 24 24 H 1.08997 * 109.46738 * 59.99912 * 1 2 3 25 25 H 1.00906 * 110.99737 * 180.02562 * 3 2 1 26 26 H 1.00894 * 111.00354 * 303.95453 * 3 2 1 27 27 H 0.97003 * 120.00587 * 180.02562 * 7 6 4 28 28 H 1.07992 * 119.67030 * 359.97438 * 13 12 2 29 29 H 1.08008 * 120.10715 * 180.02562 * 14 13 12 30 30 H 1.08002 * 125.03193 * 179.97438 * 18 16 15 31 31 H 1.07993 * 126.50200 * 179.71624 * 19 18 16 32 32 H 1.07998 * 120.11870 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5564 8 14 0.6250 1.2789 2.6542 9 1 -0.8027 0.8726 2.6998 10 1 0.9761 1.9949 3.9069 11 1 0.8472 2.1764 1.4922 12 6 2.0323 -0.7103 -1.2306 13 6 2.2615 -2.0791 -1.1902 14 6 2.7210 -2.7475 -2.3035 15 6 2.9580 -2.0465 -3.4816 16 7 3.4056 -2.4152 -4.7304 17 1 3.6456 -3.3178 -4.9923 18 6 3.4614 -1.3187 -5.5471 19 6 3.0680 -0.2261 -4.8736 20 6 2.7241 -0.6598 -3.5173 21 6 2.2582 -0.0023 -2.3770 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.0284 1.4119 -0.0004 26 1 1.6442 1.9013 -0.7813 27 1 1.9028 -0.5286 4.4375 28 1 2.0784 -2.6250 -0.2766 29 1 2.8959 -3.8126 -2.2622 30 1 3.7797 -1.3298 -6.5791 31 1 3.0137 0.7812 -5.2591 32 1 2.0770 1.0621 -2.4012 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363326.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:12 Heat of formation + Delta-G solvation = 52.137081 kcal Electronic energy + Delta-G solvation = -15725.313739 eV Core-core repulsion = 13264.743801 eV Total energy + Delta-G solvation = -2460.569938 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.01568 -39.28095 -36.08900 -33.94986 -32.66605 -30.34357 -29.61855 -29.14697 -27.05663 -24.06814 -22.87137 -21.61867 -20.64486 -18.83009 -18.47856 -17.15148 -16.66588 -16.15380 -15.78510 -15.28604 -15.00810 -14.74028 -14.63125 -13.97336 -13.92776 -13.74054 -13.34203 -13.01272 -12.76226 -12.43596 -12.01286 -11.92420 -11.65412 -11.44115 -10.93610 -10.63078 -10.55260 -8.99131 -8.77886 -8.46747 -8.17158 -6.27528 0.32517 0.81399 1.50381 1.61634 1.93796 1.95986 2.37431 2.63804 3.05734 3.24474 3.88469 4.05769 4.15821 4.24842 4.38620 4.56142 4.63577 4.74749 4.85718 4.89832 4.96057 5.12250 5.19149 5.27741 5.41842 5.56729 5.71983 5.87875 5.92506 6.02462 6.23032 6.37502 6.65741 6.83976 6.86026 7.12636 7.50546 8.95742 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.048279 B = 0.007591 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.817702 B = 3687.480831 C = 4021.338453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.248 3.752 3 N -0.833 5.833 4 C -0.506 4.506 5 H 0.040 0.960 6 C 0.025 3.975 7 N -0.955 5.955 8 Si 0.930 3.070 9 H -0.304 1.304 10 H -0.334 1.334 11 H -0.154 1.154 12 C -0.110 4.110 13 C -0.100 4.100 14 C -0.138 4.138 15 C 0.067 3.933 16 N -0.590 5.590 17 H 0.427 0.573 18 C 0.066 3.934 19 C -0.234 4.234 20 C -0.129 4.129 21 C -0.096 4.096 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.059 0.941 25 H 0.335 0.665 26 H 0.329 0.671 27 H 0.259 0.741 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.214 0.786 31 H 0.160 0.840 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 0.414 -20.291 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.157 3.843 3 N -0.364 5.364 4 C -0.544 4.544 5 H 0.058 0.942 6 C -0.172 4.172 7 N -0.595 5.595 8 Si 0.760 3.240 9 H -0.233 1.233 10 H -0.265 1.265 11 H -0.075 1.075 12 C -0.113 4.113 13 C -0.120 4.120 14 C -0.158 4.158 15 C -0.040 4.040 16 N -0.195 5.195 17 H 0.266 0.734 18 C -0.061 4.061 19 C -0.259 4.259 20 C -0.134 4.134 21 C -0.114 4.114 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.148 0.852 26 H 0.143 0.857 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.150 0.850 30 H 0.231 0.769 31 H 0.177 0.823 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.724 0.381 -19.524 19.541 hybrid contribution 0.171 -0.595 0.256 0.670 sum 0.895 -0.214 -19.269 19.291 Atomic orbital electron populations 1.22000 0.96216 1.00665 0.99982 1.17560 0.91736 0.85358 0.89687 1.59664 1.13678 1.14122 1.48928 1.21165 1.31604 1.11597 0.90000 0.94230 1.25837 0.96645 0.99615 0.95139 1.70096 1.47973 1.42884 0.98542 0.86519 0.75881 0.83121 0.78470 1.23317 1.26474 1.07516 1.20402 1.00192 0.94618 0.96077 1.20939 0.98912 0.95012 0.97148 1.20170 1.05134 0.99800 0.90738 1.18317 1.03390 0.94580 0.87748 1.41802 1.58388 1.11199 1.08095 0.73372 1.22459 1.01206 0.84739 0.97657 1.21964 1.11958 1.00186 0.91816 1.19573 1.04979 0.93100 0.95699 1.20164 1.00600 0.99739 0.90940 0.93494 0.94190 0.92184 0.85155 0.85698 0.93296 0.87286 0.85024 0.76900 0.82272 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 8.24 71.98 0.59 -4.97 16 2 C 0.25 11.12 0.65 2.04 0.00 11.12 16 3 N -0.83 -33.18 5.13 -157.51 -0.81 -33.99 16 4 C -0.51 -28.50 8.14 25.60 0.21 -28.30 16 5 H 0.04 2.47 6.26 -2.91 -0.02 2.45 16 6 C 0.03 1.50 5.45 84.66 0.46 1.96 16 7 N -0.95 -61.61 13.96 21.45 0.30 -61.31 16 8 Si 0.93 46.43 23.86 68.60 1.64 48.07 16 9 H -0.30 -15.17 6.87 99.48 0.68 -14.48 16 10 H -0.33 -17.52 7.11 99.48 0.71 -16.81 16 11 H -0.15 -6.75 5.16 99.48 0.51 -6.24 16 12 C -0.11 -4.50 4.76 -20.10 -0.10 -4.60 16 13 C -0.10 -4.15 8.85 22.30 0.20 -3.96 16 14 C -0.14 -4.70 10.08 22.37 0.23 -4.47 16 15 C 0.07 2.05 7.28 39.03 0.28 2.33 16 16 N -0.59 -12.37 6.07 -187.61 -1.14 -13.51 16 17 H 0.43 5.96 8.96 -92.71 -0.83 5.13 16 18 C 0.07 1.17 11.82 83.00 0.98 2.15 16 19 C -0.23 -5.57 11.08 23.51 0.26 -5.31 16 20 C -0.13 -4.14 6.37 -20.20 -0.13 -4.27 16 21 C -0.10 -3.36 9.28 22.23 0.21 -3.16 16 22 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 23 H 0.04 1.78 3.27 -2.39 -0.01 1.77 16 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.34 13.40 8.98 -89.69 -0.81 12.59 16 26 H 0.33 10.85 7.34 -89.70 -0.66 10.19 16 27 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 28 H 0.11 5.04 6.39 -2.91 -0.02 5.02 16 29 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 30 H 0.21 1.59 8.06 -2.91 -0.02 1.56 16 31 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.13 3.94 6.42 -2.91 -0.02 3.92 16 Total: -1.00 -72.88 256.54 1.85 -71.03 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -1.33 Total: 31.18 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 3.19 Total: -41.47 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -1.65 Total: -108.81 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.64 Total: 48.07 kcal Total: -72.88 1.85 -71.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363326.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.171 kcal (2) G-P(sol) polarization free energy of solvation -72.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds