Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 109.47179 * 2 1 4 4 C 1.50699 * 109.47168 * 239.99854 * 2 1 3 5 5 H 1.08000 * 120.00221 * 240.00085 * 4 2 1 6 6 C 1.37870 * 119.99909 * 60.00084 * 4 2 1 7 7 N 1.31515 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00169 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46760 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47060 * 119.99627 * 8 6 4 11 11 H 1.48493 * 109.46918 * 239.99886 * 8 6 4 12 12 C 1.50706 * 109.47116 * 119.99600 * 2 1 3 13 13 C 1.38829 * 119.73192 * 89.99902 * 12 2 1 14 14 C 1.37752 * 120.66563 * 179.97438 * 13 12 2 15 15 C 1.39126 * 119.78105 * 0.02742 * 14 13 12 16 16 N 1.37681 * 133.51241 * 179.97438 * 15 14 13 17 17 H 0.97000 * 125.06492 * 0.04228 * 16 15 14 18 18 C 1.36832 * 109.87377 * 180.02562 * 16 15 14 19 19 C 1.34238 * 109.93011 * 359.97438 * 18 16 15 20 20 C 1.40667 * 119.32756 * 359.97438 * 15 14 13 21 21 C 1.36625 * 119.73951 * 269.72648 * 12 2 1 22 22 H 1.09008 * 109.47142 * 299.99732 * 1 2 3 23 23 H 1.08992 * 109.47123 * 59.99698 * 1 2 3 24 24 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 25 25 H 1.00903 * 110.99618 * 56.04581 * 3 2 1 26 26 H 1.00892 * 110.99888 * 179.97438 * 3 2 1 27 27 H 0.97000 * 119.99888 * 180.02562 * 7 6 4 28 28 H 1.08003 * 119.66994 * 359.97438 * 13 12 2 29 29 H 1.08001 * 120.10874 * 179.97438 * 14 13 12 30 30 H 1.08003 * 125.03065 * 180.02562 * 18 16 15 31 31 H 1.07995 * 126.49727 * 180.02562 * 19 18 16 32 32 H 1.07998 * 120.11096 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9428 0.8296 -2.6033 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1660 -1.5868 -4.8160 11 1 3.1465 -0.1875 -4.8164 12 6 2.0323 -0.7104 1.2306 13 6 2.2618 -2.0789 1.1901 14 6 2.7214 -2.7475 2.3033 15 6 2.9583 -2.0466 3.4815 16 7 3.4058 -2.4153 4.7303 17 1 3.6461 -3.3178 4.9921 18 6 3.4615 -1.3188 5.5470 19 6 3.0630 -0.2271 4.8751 20 6 2.7241 -0.6600 3.5173 21 6 2.2636 -0.0015 2.3754 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.6442 1.9013 0.7814 26 1 3.0283 1.4119 0.0004 27 1 0.7082 1.1607 -3.4843 28 1 2.0782 -2.6250 0.2765 29 1 2.8965 -3.8124 2.2619 30 1 3.7797 -1.3300 6.5790 31 1 3.0036 0.7793 5.2622 32 1 2.0866 1.0637 2.3982 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084363329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = 65.334185 kcal Electronic energy + Delta-G solvation = -15659.288627 eV Core-core repulsion = 13199.290958 eV Total energy + Delta-G solvation = -2459.997668 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73646 -37.48799 -34.27732 -31.75451 -31.12723 -28.60403 -28.07394 -27.03468 -25.10980 -22.40784 -21.32877 -20.39797 -18.98658 -17.56261 -16.33738 -15.21297 -15.06649 -14.10684 -14.06648 -13.87502 -13.62589 -13.14846 -12.84009 -12.37023 -12.13618 -12.00521 -11.26283 -11.08466 -10.81903 -10.52130 -10.41579 -10.20701 -10.02312 -9.65020 -9.27076 -8.80650 -8.32800 -7.50312 -7.25232 -6.91306 -5.78102 -3.95054 1.69186 2.32395 3.09293 3.35645 3.44395 3.45905 3.46919 4.50019 4.61090 5.07679 5.27640 5.42830 5.56953 5.77052 5.94806 6.01843 6.10568 6.30722 6.46258 6.50634 6.72981 6.93552 7.10960 7.17771 7.19674 7.30053 7.36431 7.49834 7.75973 7.86736 7.90840 8.12109 8.42581 8.76370 9.10105 9.23993 9.73510 11.21837 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043264 B = 0.007312 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.037019 B = 3828.556676 C = 4202.905070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.278 3.722 3 N -0.806 5.806 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.085 3.915 7 N -0.844 5.844 8 Si 0.880 3.120 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.286 1.286 12 C -0.092 4.092 13 C -0.071 4.071 14 C -0.148 4.148 15 C 0.076 3.924 16 N -0.603 5.603 17 H 0.408 0.592 18 C 0.033 3.967 19 C -0.208 4.208 20 C -0.110 4.110 21 C -0.097 4.097 22 H 0.006 0.994 23 H 0.092 0.908 24 H 0.029 0.971 25 H 0.296 0.704 26 H 0.320 0.680 27 H 0.253 0.747 28 H 0.135 0.865 29 H 0.109 0.891 30 H 0.161 0.839 31 H 0.139 0.861 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 -4.546 12.579 13.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.187 3.813 3 N -0.332 5.332 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.121 4.121 7 N -0.479 5.479 8 Si 0.708 3.292 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.095 4.095 13 C -0.090 4.090 14 C -0.169 4.169 15 C -0.029 4.029 16 N -0.207 5.207 17 H 0.244 0.756 18 C -0.093 4.093 19 C -0.234 4.234 20 C -0.114 4.114 21 C -0.116 4.116 22 H 0.025 0.975 23 H 0.111 0.889 24 H 0.048 0.952 25 H 0.108 0.892 26 H 0.131 0.869 27 H 0.063 0.937 28 H 0.153 0.847 29 H 0.127 0.873 30 H 0.179 0.821 31 H 0.156 0.844 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.893 -4.422 11.774 12.906 hybrid contribution 1.006 -1.152 0.332 1.565 sum 3.899 -5.574 12.106 13.886 Atomic orbital electron populations 1.21727 0.96476 0.99030 1.00622 1.17440 0.91900 0.84285 0.87716 1.59188 1.11507 1.14979 1.47539 1.20997 1.33503 1.12204 0.89698 0.92377 1.24914 0.94512 0.94327 0.98360 1.70040 1.34520 1.21263 1.22090 0.86768 0.78662 0.79812 0.83996 1.19998 1.21212 1.21181 1.21205 0.96753 0.94484 0.97103 1.21098 0.96328 0.94842 0.96763 1.20065 1.06968 0.98603 0.91250 1.18239 1.03470 0.94593 0.86589 1.41674 1.59902 1.09561 1.09553 0.75643 1.21611 1.05127 0.86346 0.96179 1.21648 1.10219 0.98163 0.93327 1.19160 1.05372 0.92475 0.94404 1.20142 1.00890 0.99309 0.91260 0.97524 0.88893 0.95159 0.89219 0.86893 0.93686 0.84691 0.87314 0.82125 0.84357 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.49 37.16 0.32 -2.61 16 2 C 0.28 6.70 0.68 -133.90 -0.09 6.61 16 3 N -0.81 -18.91 7.79 -1.13 -0.01 -18.92 16 4 C -0.53 -13.93 7.53 -34.44 -0.26 -14.19 16 5 H 0.06 1.53 6.01 -52.49 -0.32 1.21 16 6 C 0.08 2.30 5.23 -17.82 -0.09 2.21 16 7 N -0.84 -23.69 10.80 55.43 0.60 -23.09 16 8 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C -0.09 -2.00 4.76 -104.98 -0.50 -2.50 16 13 C -0.07 -1.45 8.85 -39.54 -0.35 -1.80 16 14 C -0.15 -2.63 10.08 -39.43 -0.40 -3.02 16 15 C 0.08 1.32 7.28 -83.99 -0.61 0.71 16 16 N -0.60 -8.00 6.07 -10.65 -0.06 -8.07 16 17 H 0.41 3.99 8.96 -40.82 -0.37 3.62 16 18 C 0.03 0.41 11.82 -16.73 -0.20 0.21 16 19 C -0.21 -3.11 11.08 -37.67 -0.42 -3.53 16 20 C -0.11 -2.02 6.37 -105.14 -0.67 -2.69 16 21 C -0.10 -1.93 9.28 -39.65 -0.37 -2.30 16 22 H 0.01 0.13 8.14 -51.92 -0.42 -0.29 16 23 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.30 6.29 7.34 -39.29 -0.29 6.00 16 26 H 0.32 7.37 8.98 -39.30 -0.35 7.02 16 27 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.14 2.81 6.39 -52.48 -0.34 2.47 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.11 2.11 6.41 -52.49 -0.34 1.77 16 LS Contribution 265.90 15.07 4.01 4.01 Total: -1.00 -30.09 265.90 -7.69 -37.77 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -3.56 Total: 15.25 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -3.64 Total: -22.90 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.53 Total: -50.08 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.09 -7.69 -37.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.106 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds