Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 109.47179 * 2 1 4 4 C 1.50699 * 109.47168 * 239.99854 * 2 1 3 5 5 H 1.08000 * 120.00221 * 240.00085 * 4 2 1 6 6 C 1.37870 * 119.99909 * 60.00084 * 4 2 1 7 7 N 1.31515 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00169 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46760 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47060 * 119.99627 * 8 6 4 11 11 H 1.48493 * 109.46918 * 239.99886 * 8 6 4 12 12 C 1.50706 * 109.47116 * 119.99600 * 2 1 3 13 13 C 1.38829 * 119.73192 * 89.99902 * 12 2 1 14 14 C 1.37752 * 120.66563 * 179.97438 * 13 12 2 15 15 C 1.39126 * 119.78105 * 0.02742 * 14 13 12 16 16 N 1.37681 * 133.51241 * 179.97438 * 15 14 13 17 17 H 0.97000 * 125.06492 * 0.04228 * 16 15 14 18 18 C 1.36832 * 109.87377 * 180.02562 * 16 15 14 19 19 C 1.34238 * 109.93011 * 359.97438 * 18 16 15 20 20 C 1.40667 * 119.32756 * 359.97438 * 15 14 13 21 21 C 1.36625 * 119.73951 * 269.72648 * 12 2 1 22 22 H 1.09008 * 109.47142 * 299.99732 * 1 2 3 23 23 H 1.08992 * 109.47123 * 59.99698 * 1 2 3 24 24 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 25 25 H 1.00903 * 110.99618 * 56.04581 * 3 2 1 26 26 H 1.00892 * 110.99888 * 179.97438 * 3 2 1 27 27 H 0.97000 * 119.99888 * 180.02562 * 7 6 4 28 28 H 1.08003 * 119.66994 * 359.97438 * 13 12 2 29 29 H 1.08001 * 120.10874 * 179.97438 * 14 13 12 30 30 H 1.08003 * 125.03065 * 180.02562 * 18 16 15 31 31 H 1.07995 * 126.49727 * 180.02562 * 19 18 16 32 32 H 1.07998 * 120.11096 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9428 0.8296 -2.6033 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1660 -1.5868 -4.8160 11 1 3.1465 -0.1875 -4.8164 12 6 2.0323 -0.7104 1.2306 13 6 2.2618 -2.0789 1.1901 14 6 2.7214 -2.7475 2.3033 15 6 2.9583 -2.0466 3.4815 16 7 3.4058 -2.4153 4.7303 17 1 3.6461 -3.3178 4.9921 18 6 3.4615 -1.3188 5.5470 19 6 3.0630 -0.2271 4.8751 20 6 2.7241 -0.6600 3.5173 21 6 2.2636 -0.0015 2.3754 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.6442 1.9013 0.7814 26 1 3.0283 1.4119 0.0004 27 1 0.7082 1.1607 -3.4843 28 1 2.0782 -2.6250 0.2765 29 1 2.8965 -3.8124 2.2619 30 1 3.7797 -1.3300 6.5790 31 1 3.0036 0.7793 5.2622 32 1 2.0866 1.0637 2.3982 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = 45.581705 kcal Electronic energy + Delta-G solvation = -15660.145158 eV Core-core repulsion = 13199.290958 eV Total energy + Delta-G solvation = -2460.854200 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.98173 -39.05542 -35.94352 -33.57335 -32.56597 -30.13761 -29.45688 -28.77385 -27.11628 -23.92837 -22.76636 -21.58489 -20.65804 -18.80476 -18.15736 -16.90629 -16.61557 -15.88967 -15.77474 -15.23085 -15.03136 -14.59146 -14.33015 -13.88814 -13.74082 -13.39110 -13.02235 -12.86682 -12.71845 -12.36476 -12.17456 -11.90212 -11.74267 -11.46800 -10.76924 -10.53655 -10.39156 -8.95608 -8.77789 -8.44572 -7.82736 -6.04948 0.35168 0.86966 1.44748 1.48219 1.56788 1.94266 2.38773 2.52669 3.11914 3.37057 3.93896 4.11285 4.35627 4.40639 4.44789 4.59129 4.68731 4.89370 4.98093 5.10802 5.22050 5.24700 5.32240 5.43841 5.66694 5.82882 5.84357 5.93300 5.96964 6.10169 6.38961 6.48853 6.81815 6.86650 7.19750 7.38042 7.66205 9.15328 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043264 B = 0.007312 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.037019 B = 3828.556676 C = 4202.905070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.274 3.726 3 N -0.814 5.814 4 C -0.534 4.534 5 H 0.053 0.947 6 C 0.040 3.960 7 N -0.871 5.871 8 Si 0.938 3.062 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.287 1.287 12 C -0.114 4.114 13 C -0.101 4.101 14 C -0.135 4.135 15 C 0.064 3.936 16 N -0.589 5.589 17 H 0.428 0.572 18 C 0.069 3.931 19 C -0.241 4.241 20 C -0.130 4.130 21 C -0.107 4.107 22 H 0.017 0.983 23 H 0.066 0.934 24 H 0.026 0.974 25 H 0.308 0.692 26 H 0.319 0.681 27 H 0.251 0.749 28 H 0.120 0.880 29 H 0.138 0.862 30 H 0.215 0.785 31 H 0.155 0.845 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.604 -5.787 15.135 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.183 3.817 3 N -0.341 5.341 4 C -0.572 4.572 5 H 0.071 0.929 6 C -0.164 4.164 7 N -0.508 5.508 8 Si 0.765 3.235 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.214 1.214 12 C -0.117 4.117 13 C -0.121 4.121 14 C -0.156 4.156 15 C -0.043 4.043 16 N -0.194 5.194 17 H 0.267 0.733 18 C -0.058 4.058 19 C -0.266 4.266 20 C -0.134 4.134 21 C -0.126 4.126 22 H 0.036 0.964 23 H 0.084 0.916 24 H 0.045 0.955 25 H 0.120 0.880 26 H 0.130 0.870 27 H 0.060 0.940 28 H 0.138 0.862 29 H 0.156 0.844 30 H 0.232 0.768 31 H 0.172 0.828 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.164 -5.696 14.349 15.990 hybrid contribution 0.657 -0.804 -0.261 1.071 sum 4.820 -6.501 14.088 16.247 Atomic orbital electron populations 1.21589 0.97225 0.98450 0.99731 1.17309 0.91398 0.84614 0.88390 1.59073 1.11478 1.15215 1.48379 1.21310 1.32903 1.12102 0.90929 0.92899 1.25550 0.94909 0.95064 1.00839 1.70175 1.35712 1.22555 1.22314 0.85849 0.78050 0.78752 0.80850 1.19611 1.20962 1.21370 1.20907 0.98924 0.95135 0.96736 1.20989 0.98970 0.94580 0.97555 1.20229 1.04945 0.99875 0.90548 1.18317 1.03723 0.94326 0.87939 1.41752 1.58456 1.11096 1.08060 0.73264 1.22423 1.01056 0.84706 0.97616 1.21954 1.12364 1.00213 0.92055 1.19570 1.04981 0.93429 0.95464 1.20149 1.01523 0.99333 0.91633 0.96366 0.91564 0.95527 0.88007 0.86972 0.94003 0.86224 0.84447 0.76801 0.82753 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.61 8.49 71.98 0.61 -5.00 16 2 C 0.27 13.62 0.68 2.04 0.00 13.62 16 3 N -0.81 -39.27 7.79 -157.50 -1.23 -40.49 16 4 C -0.53 -29.06 7.53 25.60 0.19 -28.86 16 5 H 0.05 2.87 6.01 -2.91 -0.02 2.85 16 6 C 0.04 2.18 5.23 84.65 0.44 2.63 16 7 N -0.87 -50.18 10.80 21.44 0.23 -49.94 16 8 Si 0.94 43.94 29.54 68.60 2.03 45.97 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 C -0.11 -5.03 4.76 -20.10 -0.10 -5.13 16 13 C -0.10 -4.20 8.85 22.30 0.20 -4.00 16 14 C -0.14 -4.61 10.08 22.37 0.23 -4.39 16 15 C 0.06 2.04 7.28 39.03 0.28 2.32 16 16 N -0.59 -12.96 6.07 -187.61 -1.14 -14.09 16 17 H 0.43 6.16 8.96 -92.71 -0.83 5.33 16 18 C 0.07 1.34 11.82 83.00 0.98 2.32 16 19 C -0.24 -6.44 11.08 23.51 0.26 -6.18 16 20 C -0.13 -4.58 6.37 -20.20 -0.13 -4.71 16 21 C -0.11 -4.29 9.28 22.23 0.21 -4.09 16 22 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 23 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.31 13.39 7.34 -89.69 -0.66 12.73 16 26 H 0.32 15.15 8.98 -89.70 -0.81 14.34 16 27 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.12 5.17 6.39 -2.91 -0.02 5.15 16 29 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 30 H 0.22 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 32 H 0.11 4.29 6.41 -2.91 -0.02 4.28 16 Total: -1.00 -66.17 265.90 1.95 -64.22 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -1.12 Total: 35.80 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 3.18 Total: -41.46 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -2.13 Total: -104.53 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -66.17 1.95 -64.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.807 kcal (2) G-P(sol) polarization free energy of solvation -66.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds