Wall clock time and date at job start Mon Mar 30 2020 03:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36834 * 125.06098 * 2 1 4 4 C 1.34243 * 109.92317 * 180.17209 * 3 2 1 5 5 C 1.50695 * 126.49477 * 179.86778 * 4 3 2 6 6 H 1.09002 * 109.47270 * 219.68980 * 5 4 3 7 7 N 1.46897 * 109.47855 * 339.68852 * 5 4 3 8 8 C 1.50696 * 109.47213 * 99.69122 * 5 4 3 9 9 H 1.08002 * 120.00197 * 335.14880 * 8 5 4 10 10 C 1.37878 * 120.00759 * 155.14853 * 8 5 4 11 11 N 1.31517 * 119.99465 * 7.62332 * 10 8 5 12 12 Si 1.86798 * 120.00558 * 187.63168 * 10 8 5 13 13 H 1.48504 * 109.46975 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.46812 * 299.99330 * 12 10 8 15 15 H 1.48493 * 109.47194 * 59.99625 * 12 10 8 16 16 C 1.46488 * 106.99940 * 359.60713 * 4 3 2 17 17 C 1.39625 * 134.02516 * 180.26162 * 16 4 3 18 18 C 1.36630 * 119.76392 * 179.97438 * 17 16 4 19 19 C 1.38830 * 120.52195 * 0.02833 * 18 17 16 20 20 C 1.37752 * 120.67018 * 359.97438 * 19 18 17 21 21 C 1.37686 * 125.05942 * 179.73087 * 2 1 3 22 22 H 1.09002 * 109.46687 * 270.27429 * 1 2 3 23 23 H 1.08997 * 109.47089 * 30.26845 * 1 2 3 24 24 H 1.08996 * 109.47600 * 150.27824 * 1 2 3 25 25 H 1.08000 * 125.03576 * 0.05041 * 3 2 1 26 26 H 1.00905 * 110.99840 * 58.21659 * 7 5 4 27 27 H 1.00899 * 111.00679 * 182.17127 * 7 5 4 28 28 H 0.97005 * 120.00335 * 355.30075 * 11 10 8 29 29 H 1.07999 * 120.12294 * 359.96025 * 17 16 4 30 30 H 1.07996 * 119.73633 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.66387 * 180.02562 * 19 18 17 32 32 H 1.08004 * 120.10493 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1200 0.0000 4 6 3.5469 0.7695 -0.0038 5 6 4.7284 1.7048 -0.0079 6 1 5.5022 1.3100 -0.6664 7 7 4.3048 3.0269 -0.4880 8 6 5.2750 1.8298 1.3909 9 1 4.6337 1.6446 2.2399 10 6 6.5939 2.1807 1.5870 11 7 7.3345 2.5517 0.5655 12 14 7.3290 2.1289 3.3035 13 1 8.7523 2.5484 3.2453 14 1 6.5767 3.0507 4.1921 15 1 7.2424 0.7460 3.8375 16 6 3.5945 -0.6946 0.0032 17 6 4.6295 -1.6318 0.0079 18 6 4.3361 -2.9662 0.0147 19 6 3.0167 -3.3981 0.0163 20 6 1.9803 -2.4906 0.0116 21 6 2.2559 -1.1270 0.0053 22 1 -0.3633 0.0049 1.0277 23 1 -0.3633 0.8875 -0.5180 24 1 -0.3634 -0.8924 -0.5095 25 1 1.8834 2.1355 0.0008 26 1 3.5671 3.4020 0.0893 27 1 5.0869 3.6628 -0.5336 28 1 6.9739 2.5135 -0.3343 29 1 5.6583 -1.3032 0.0061 30 1 5.1370 -3.6907 0.0180 31 1 2.8006 -4.4562 0.0221 32 1 0.9572 -2.8367 0.0125 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084363335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:58 Heat of formation + Delta-G solvation = 54.616234 kcal Electronic energy + Delta-G solvation = -15613.428136 eV Core-core repulsion = 13152.965702 eV Total energy + Delta-G solvation = -2460.462433 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.70661 -36.56048 -35.17674 -32.24188 -30.81761 -29.85001 -28.07908 -26.45861 -24.83845 -22.38853 -21.86224 -20.82690 -18.72509 -16.99648 -16.29375 -15.87215 -14.97313 -14.84499 -14.33215 -13.76542 -13.52380 -13.38845 -12.87833 -12.72153 -12.39480 -12.32875 -11.84084 -11.71521 -10.97673 -10.82193 -10.77863 -10.32049 -10.16462 -9.75757 -9.44810 -8.94378 -8.54537 -7.59515 -7.36413 -6.83559 -6.31855 -4.15018 1.70122 2.15398 3.32263 3.38970 3.44247 3.48882 3.62160 4.45514 4.54674 4.97347 5.16337 5.28776 5.32430 5.42998 5.50075 5.52465 5.58290 5.90892 6.05553 6.14301 6.34479 6.45837 6.61785 6.72373 6.95858 7.16312 7.24054 7.38643 7.63119 7.80206 7.94788 8.03059 8.32821 8.58418 8.73961 8.81802 9.56974 10.95452 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025716 B = 0.008929 C = 0.007524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.541499 B = 3135.226497 C = 3720.507252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.497 5.497 3 C 0.018 3.982 4 C -0.095 4.095 5 C 0.254 3.746 6 H 0.049 0.951 7 N -0.854 5.854 8 C -0.616 4.616 9 H 0.046 0.954 10 C 0.026 3.974 11 N -0.908 5.908 12 Si 1.065 2.935 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.287 1.287 16 C -0.096 4.096 17 C -0.050 4.050 18 C -0.166 4.166 19 C -0.106 4.106 20 C -0.143 4.143 21 C 0.094 3.906 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.160 0.840 26 H 0.316 0.684 27 H 0.334 0.666 28 H 0.271 0.729 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.894 -6.919 -0.920 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.182 5.182 3 C -0.103 4.103 4 C -0.102 4.102 5 C 0.145 3.855 6 H 0.066 0.934 7 N -0.380 5.380 8 C -0.656 4.656 9 H 0.065 0.935 10 C -0.179 4.179 11 N -0.545 5.545 12 Si 0.893 3.107 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.213 1.213 16 C -0.102 4.102 17 C -0.068 4.068 18 C -0.186 4.186 19 C -0.125 4.125 20 C -0.164 4.164 21 C -0.013 4.013 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.177 0.823 26 H 0.126 0.874 27 H 0.145 0.855 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.078 -6.909 -0.759 12.242 hybrid contribution -1.239 -0.035 0.250 1.264 sum -11.317 -6.944 -0.509 13.287 Atomic orbital electron populations 1.21747 0.78445 1.03282 1.02074 1.43632 1.04996 1.04438 1.65167 1.21357 0.90094 0.90097 1.08771 1.20769 0.94226 0.91499 1.03689 1.17541 0.88808 0.84738 0.94433 0.93350 1.59553 1.14435 1.06457 1.57600 1.22532 0.98177 1.52231 0.92655 0.93526 1.25838 0.93912 0.92800 1.05398 1.70842 1.41007 1.42404 1.00207 0.83595 0.76209 0.76589 0.74262 1.20769 1.21595 1.21344 1.19163 0.91667 0.93548 1.05792 1.20403 0.98662 0.91819 0.95934 1.20511 0.96116 0.95408 1.06531 1.20632 0.92418 0.98120 1.01354 1.19815 0.98699 0.89342 1.08507 1.18260 0.90465 0.88148 1.04386 0.92196 0.90477 0.90924 0.82304 0.87397 0.85489 0.91751 0.85975 0.86716 0.86652 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 11.03 59.85 0.66 1.70 16 2 N -0.50 -8.71 3.18 -121.80 -0.39 -9.10 16 3 C 0.02 0.36 10.53 -16.73 -0.18 0.18 16 4 C -0.10 -2.19 5.44 -102.71 -0.56 -2.75 16 5 C 0.25 6.42 2.84 -70.02 -0.20 6.22 16 6 H 0.05 1.35 7.05 -51.93 -0.37 0.99 16 7 N -0.85 -19.42 8.95 -6.66 -0.06 -19.48 16 8 C -0.62 -16.99 8.58 -34.44 -0.30 -17.28 16 9 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 10 C 0.03 0.73 5.44 -17.82 -0.10 0.63 16 11 N -0.91 -26.45 13.62 55.43 0.75 -25.70 16 12 Si 1.07 25.11 29.91 -169.99 -5.08 20.03 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 C -0.10 -2.11 6.35 -105.14 -0.67 -2.78 16 17 C -0.05 -1.02 10.05 -39.65 -0.40 -1.42 16 18 C -0.17 -2.84 9.97 -39.94 -0.40 -3.23 16 19 C -0.11 -1.64 10.01 -39.54 -0.40 -2.04 16 20 C -0.14 -2.32 9.97 -39.43 -0.39 -2.71 16 21 C 0.09 1.80 6.81 -83.99 -0.57 1.23 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.16 2.80 7.25 -52.49 -0.38 2.42 16 26 H 0.32 6.71 7.91 -39.29 -0.31 6.40 16 27 H 0.33 7.90 8.45 -39.29 -0.33 7.56 16 28 H 0.27 7.86 6.27 -40.82 -0.26 7.60 16 29 H 0.12 2.59 8.06 -52.49 -0.42 2.16 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 275.36 15.07 4.15 4.15 Total: -1.00 -30.87 275.36 -7.93 -38.80 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -3.81 Total: 13.56 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -3.49 Total: -22.25 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.31 Total: -54.28 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.87 -7.93 -38.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.415 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds