Wall clock time and date at job start Mon Mar 30 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36834 * 125.06098 * 2 1 4 4 C 1.34243 * 109.92317 * 180.17209 * 3 2 1 5 5 C 1.50695 * 126.49477 * 179.86778 * 4 3 2 6 6 H 1.09002 * 109.47270 * 219.68980 * 5 4 3 7 7 N 1.46897 * 109.47855 * 339.68852 * 5 4 3 8 8 C 1.50696 * 109.47213 * 99.69122 * 5 4 3 9 9 H 1.08002 * 120.00197 * 335.14880 * 8 5 4 10 10 C 1.37878 * 120.00759 * 155.14853 * 8 5 4 11 11 N 1.31517 * 119.99465 * 7.62332 * 10 8 5 12 12 Si 1.86798 * 120.00558 * 187.63168 * 10 8 5 13 13 H 1.48504 * 109.46975 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.46812 * 299.99330 * 12 10 8 15 15 H 1.48493 * 109.47194 * 59.99625 * 12 10 8 16 16 C 1.46488 * 106.99940 * 359.60713 * 4 3 2 17 17 C 1.39625 * 134.02516 * 180.26162 * 16 4 3 18 18 C 1.36630 * 119.76392 * 179.97438 * 17 16 4 19 19 C 1.38830 * 120.52195 * 0.02833 * 18 17 16 20 20 C 1.37752 * 120.67018 * 359.97438 * 19 18 17 21 21 C 1.37686 * 125.05942 * 179.73087 * 2 1 3 22 22 H 1.09002 * 109.46687 * 270.27429 * 1 2 3 23 23 H 1.08997 * 109.47089 * 30.26845 * 1 2 3 24 24 H 1.08996 * 109.47600 * 150.27824 * 1 2 3 25 25 H 1.08000 * 125.03576 * 0.05041 * 3 2 1 26 26 H 1.00905 * 110.99840 * 58.21659 * 7 5 4 27 27 H 1.00899 * 111.00679 * 182.17127 * 7 5 4 28 28 H 0.97005 * 120.00335 * 355.30075 * 11 10 8 29 29 H 1.07999 * 120.12294 * 359.96025 * 17 16 4 30 30 H 1.07996 * 119.73633 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.66387 * 180.02562 * 19 18 17 32 32 H 1.08004 * 120.10493 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1200 0.0000 4 6 3.5469 0.7695 -0.0038 5 6 4.7284 1.7048 -0.0079 6 1 5.5022 1.3100 -0.6664 7 7 4.3048 3.0269 -0.4880 8 6 5.2750 1.8298 1.3909 9 1 4.6337 1.6446 2.2399 10 6 6.5939 2.1807 1.5870 11 7 7.3345 2.5517 0.5655 12 14 7.3290 2.1289 3.3035 13 1 8.7523 2.5484 3.2453 14 1 6.5767 3.0507 4.1921 15 1 7.2424 0.7460 3.8375 16 6 3.5945 -0.6946 0.0032 17 6 4.6295 -1.6318 0.0079 18 6 4.3361 -2.9662 0.0147 19 6 3.0167 -3.3981 0.0163 20 6 1.9803 -2.4906 0.0116 21 6 2.2559 -1.1270 0.0053 22 1 -0.3633 0.0049 1.0277 23 1 -0.3633 0.8875 -0.5180 24 1 -0.3634 -0.8924 -0.5095 25 1 1.8834 2.1355 0.0008 26 1 3.5671 3.4020 0.0893 27 1 5.0869 3.6628 -0.5336 28 1 6.9739 2.5135 -0.3343 29 1 5.6583 -1.3032 0.0061 30 1 5.1370 -3.6907 0.0180 31 1 2.8006 -4.4562 0.0221 32 1 0.9572 -2.8367 0.0125 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:57 Heat of formation + Delta-G solvation = 34.721049 kcal Electronic energy + Delta-G solvation = -15614.290856 eV Core-core repulsion = 13152.965702 eV Total energy + Delta-G solvation = -2461.325153 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.12551 -37.94015 -37.05866 -33.95654 -32.57639 -31.15121 -29.51604 -28.12096 -26.55519 -24.15692 -23.34164 -22.21379 -20.33207 -18.94016 -17.90367 -17.23408 -16.36443 -16.15251 -15.98448 -15.70025 -14.95565 -14.79191 -14.62237 -14.48813 -13.87099 -13.64807 -13.40509 -13.04696 -12.68586 -12.38725 -12.12469 -12.03461 -11.88479 -11.55036 -11.43880 -10.75552 -10.35628 -9.31926 -9.00467 -8.69707 -8.19407 -6.38137 0.29174 0.77165 1.47391 1.54963 1.75150 1.91944 2.05206 2.52912 3.05931 3.13844 3.86783 3.99500 4.00499 4.14998 4.27331 4.37268 4.48925 4.63809 4.67006 4.72483 4.80134 4.94339 5.09179 5.13801 5.45724 5.62695 5.75984 5.90529 5.96375 6.01375 6.10564 6.35730 6.54538 6.57615 6.66499 6.86728 7.40887 8.71563 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025716 B = 0.008929 C = 0.007524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.541499 B = 3135.226497 C = 3720.507252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.492 5.492 3 C 0.038 3.962 4 C -0.155 4.155 5 C 0.264 3.736 6 H 0.005 0.995 7 N -0.839 5.839 8 C -0.619 4.619 9 H 0.031 0.969 10 C -0.021 4.021 11 N -0.929 5.929 12 Si 1.109 2.891 13 H -0.281 1.281 14 H -0.271 1.271 15 H -0.280 1.280 16 C -0.138 4.138 17 C -0.092 4.092 18 C -0.157 4.157 19 C -0.100 4.100 20 C -0.132 4.132 21 C 0.080 3.920 22 H 0.075 0.925 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.178 0.822 26 H 0.327 0.673 27 H 0.326 0.674 28 H 0.259 0.741 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.162 0.838 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.684 -8.675 -0.166 16.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.176 5.176 3 C -0.086 4.086 4 C -0.162 4.162 5 C 0.154 3.846 6 H 0.023 0.977 7 N -0.365 5.365 8 C -0.659 4.659 9 H 0.049 0.951 10 C -0.221 4.221 11 N -0.566 5.566 12 Si 0.932 3.068 13 H -0.206 1.206 14 H -0.197 1.197 15 H -0.205 1.205 16 C -0.143 4.143 17 C -0.111 4.111 18 C -0.176 4.176 19 C -0.119 4.119 20 C -0.153 4.153 21 C -0.027 4.027 22 H 0.094 0.906 23 H 0.115 0.885 24 H 0.115 0.885 25 H 0.195 0.805 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.157 0.843 31 H 0.179 0.821 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.926 -8.677 -0.012 15.568 hybrid contribution -0.482 0.425 -0.036 0.644 sum -13.408 -8.253 -0.049 15.744 Atomic orbital electron populations 1.22167 0.74732 1.05569 1.03813 1.43909 1.07016 1.03114 1.63531 1.21526 0.89487 0.91577 1.06029 1.20657 0.94783 0.92236 1.08507 1.17202 0.89290 0.85982 0.92167 0.97731 1.59451 1.14201 1.05471 1.57424 1.22727 0.98236 1.51480 0.93428 0.95054 1.27142 0.94658 0.92192 1.08126 1.70944 1.41263 1.44330 1.00109 0.83018 0.75734 0.77275 0.70765 1.20593 1.19674 1.20538 1.19462 0.93851 0.93364 1.07647 1.20398 0.97240 0.93765 0.99652 1.20857 0.98257 0.94099 1.04364 1.21155 0.91091 1.00392 0.99258 1.20333 1.01018 0.87818 1.06113 1.18594 0.89430 0.89786 1.04849 0.90612 0.88493 0.88525 0.80487 0.86174 0.86321 0.93004 0.89177 0.84293 0.82057 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.52 11.03 127.77 1.41 2.93 16 2 N -0.49 -16.13 3.18 -539.28 -1.71 -17.85 16 3 C 0.04 1.47 10.53 83.00 0.87 2.35 16 4 C -0.15 -7.39 5.44 -18.63 -0.10 -7.50 16 5 C 0.26 14.11 2.84 43.42 0.12 14.23 16 6 H 0.00 0.29 7.05 -2.39 -0.02 0.27 16 7 N -0.84 -39.68 8.95 -174.97 -1.57 -41.25 16 8 C -0.62 -35.66 8.58 25.60 0.22 -35.44 16 9 H 0.03 1.86 7.82 -2.91 -0.02 1.83 16 10 C -0.02 -1.23 5.44 84.65 0.46 -0.77 16 11 N -0.93 -56.51 13.62 21.45 0.29 -56.22 16 12 Si 1.11 51.60 29.91 68.60 2.05 53.65 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 C -0.14 -6.23 6.35 -20.20 -0.13 -6.36 16 17 C -0.09 -3.95 10.05 22.23 0.22 -3.73 16 18 C -0.16 -5.17 9.97 22.04 0.22 -4.95 16 19 C -0.10 -2.71 10.01 22.30 0.22 -2.49 16 20 C -0.13 -3.77 9.97 22.37 0.22 -3.55 16 21 C 0.08 2.94 6.81 39.03 0.27 3.21 16 22 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.10 1.48 8.10 -2.39 -0.02 1.46 16 25 H 0.18 6.02 7.25 -2.91 -0.02 6.00 16 26 H 0.33 14.11 7.91 -89.69 -0.71 13.40 16 27 H 0.33 16.16 8.45 -89.69 -0.76 15.41 16 28 H 0.26 16.00 6.27 -92.70 -0.58 15.42 16 29 H 0.09 4.26 8.06 -2.91 -0.02 4.23 16 30 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -71.26 275.36 2.93 -68.33 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.14 Total: 35.40 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 4.01 Total: -42.06 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -2.99 Total: -115.32 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.05 Total: 53.65 kcal Total: -71.26 2.93 -68.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.048 kcal (2) G-P(sol) polarization free energy of solvation -71.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds