Wall clock time and date at job start Mon Mar 30 2020 03:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37975 * 119.72894 * 2 1 4 4 C 1.38221 * 119.77719 * 180.02562 * 3 2 1 5 5 C 1.37981 * 119.76778 * 0.09911 * 4 3 2 6 6 C 1.50696 * 119.72898 * 179.90647 * 5 4 3 7 7 C 1.38864 * 120.54267 * 359.88886 * 5 4 3 8 8 C 1.37708 * 119.69029 * 359.95411 * 7 5 4 9 9 C 1.50625 * 122.56387 * 180.39410 * 8 7 5 10 10 C 1.52731 * 110.58789 * 342.28596 * 9 8 7 11 11 C 1.53331 * 108.38083 * 51.09873 * 10 9 8 12 12 C 1.50630 * 117.75311 * 179.73568 * 7 5 4 13 13 H 1.09002 * 109.25692 * 282.79976 * 12 7 5 14 14 C 1.50707 * 109.25251 * 42.26653 * 12 7 5 15 15 H 1.07990 * 119.99768 * 32.27481 * 14 12 7 16 16 C 1.37879 * 119.99712 * 212.27014 * 14 12 7 17 17 N 1.31511 * 120.00533 * 5.05259 * 16 14 12 18 18 Si 1.86800 * 119.99790 * 185.04833 * 16 14 12 19 19 H 1.48505 * 109.46977 * 84.99416 * 18 16 14 20 20 H 1.48493 * 109.47561 * 204.99941 * 18 16 14 21 21 H 1.48499 * 109.46966 * 324.99924 * 18 16 14 22 22 H 1.09004 * 109.46752 * 270.02315 * 1 2 3 23 23 H 1.09000 * 109.47420 * 30.02404 * 1 2 3 24 24 H 1.09003 * 109.46877 * 150.02426 * 1 2 3 25 25 H 1.08005 * 120.11235 * 0.02928 * 3 2 1 26 26 H 1.07996 * 120.12126 * 180.38329 * 4 3 2 27 27 H 1.09003 * 109.47057 * 95.62525 * 6 5 4 28 28 H 1.08999 * 109.47492 * 215.62247 * 6 5 4 29 29 H 1.09000 * 109.46880 * 335.62906 * 6 5 4 30 30 H 1.09007 * 109.25238 * 222.00256 * 9 8 7 31 31 H 1.09006 * 109.22371 * 102.55571 * 9 8 7 32 32 H 1.08999 * 109.68726 * 291.37838 * 10 9 8 33 33 H 1.09003 * 109.71609 * 170.83939 * 10 9 8 34 34 H 1.09008 * 109.67928 * 170.37716 * 11 10 9 35 35 H 1.08999 * 109.71342 * 49.84733 * 11 10 9 36 36 H 0.96997 * 120.00347 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1981 0.0000 4 6 3.5734 1.1993 -0.0005 5 6 4.2595 0.0022 -0.0031 6 6 5.7665 0.0044 -0.0059 7 6 3.5727 -1.2048 -0.0029 8 6 2.1957 -1.2059 0.0009 9 6 1.3861 -2.4761 0.0101 10 6 2.2447 -3.6634 -0.4208 11 6 3.5276 -3.6623 0.4189 12 6 4.3844 -2.4737 -0.0120 13 1 4.7640 -2.6504 -1.0184 14 6 5.5449 -2.3280 0.9384 15 1 5.4413 -1.7258 1.8288 16 6 6.7388 -2.9638 0.6710 17 7 6.8982 -3.6151 -0.4603 18 14 8.1301 -2.9000 1.9159 19 1 7.9450 -3.9775 2.9208 20 1 9.4273 -3.0908 1.2187 21 1 8.1240 -1.5808 2.5978 22 1 -0.3633 0.0004 1.0277 23 1 -0.3634 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6486 2.1320 0.0005 26 1 4.1146 2.1339 0.0057 27 1 6.1318 -0.0969 1.0161 28 1 6.1301 -0.8296 -0.6060 29 1 6.1276 0.9416 -0.4295 30 1 0.5461 -2.3719 -0.6768 31 1 1.0072 -2.6529 1.0168 32 1 2.4972 -3.5699 -1.4770 33 1 1.6982 -4.5918 -0.2549 34 1 4.0760 -4.5896 0.2526 35 1 3.2756 -3.5694 1.4753 36 1 7.7382 -4.0620 -0.6485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:40 Heat of formation + Delta-G solvation = -15.911516 kcal Electronic energy + Delta-G solvation = -16424.470766 eV Core-core repulsion = 14064.490363 eV Total energy + Delta-G solvation = -2359.980403 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06237 -37.06916 -35.98421 -33.94845 -31.01106 -30.58169 -29.87220 -26.86166 -25.23571 -23.66100 -23.43591 -20.68336 -19.98787 -18.46638 -16.92340 -16.45955 -16.03110 -15.89109 -14.91999 -14.69829 -14.56725 -14.32126 -13.84715 -13.73204 -13.27981 -13.12421 -13.03586 -12.92647 -12.74356 -12.42647 -12.34553 -12.21690 -12.01358 -11.71612 -11.61264 -11.28281 -10.80287 -10.64650 -10.41666 -9.18396 -8.94303 -8.07317 -6.07514 0.67659 0.77131 1.38622 1.41178 1.48825 2.44023 3.04897 3.21412 3.99738 4.07224 4.25058 4.28505 4.30453 4.50758 4.59639 4.65853 4.74318 4.89358 4.93364 4.94652 4.99261 5.02990 5.13657 5.14695 5.23421 5.28161 5.42990 5.45437 5.51678 5.61716 5.68167 5.77996 5.87880 5.92305 5.99436 6.24889 6.38313 6.52376 6.95093 7.48434 9.00454 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.030189 B = 0.009838 C = 0.007989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.276275 B = 2845.552265 C = 3503.987372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C -0.137 4.137 4 C -0.139 4.139 5 C -0.098 4.098 6 C -0.084 4.084 7 C -0.070 4.070 8 C -0.106 4.106 9 C -0.067 4.067 10 C -0.116 4.116 11 C -0.096 4.096 12 C 0.067 3.933 13 H 0.028 0.972 14 C -0.489 4.489 15 H 0.045 0.955 16 C 0.019 3.981 17 N -0.925 5.925 18 Si 0.935 3.065 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.267 1.267 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.143 0.857 26 H 0.130 0.870 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.030 0.970 35 H 0.041 0.959 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.046 6.200 0.602 12.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.109 4.109 3 C -0.154 4.154 4 C -0.157 4.157 5 C -0.098 4.098 6 C -0.140 4.140 7 C -0.070 4.070 8 C -0.106 4.106 9 C -0.103 4.103 10 C -0.154 4.154 11 C -0.134 4.134 12 C 0.049 3.951 13 H 0.046 0.954 14 C -0.528 4.528 15 H 0.063 0.937 16 C -0.178 4.178 17 N -0.565 5.565 18 Si 0.761 3.239 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.192 1.192 22 H 0.093 0.907 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.160 0.840 26 H 0.148 0.852 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.907 6.102 0.508 12.509 hybrid contribution 1.540 -0.296 0.561 1.665 sum -9.368 5.806 1.069 11.073 Atomic orbital electron populations 1.20837 0.89173 1.03516 1.02777 1.20190 0.97448 0.92136 1.01120 1.21081 0.93682 0.98075 1.02607 1.21140 0.95073 0.96977 1.02488 1.20132 0.96504 0.93112 1.00098 1.20736 0.91836 0.99823 1.01620 1.20294 0.93357 0.96163 0.97211 1.19822 0.92638 0.95935 1.02235 1.20453 0.97086 0.90718 1.02091 1.21581 0.96280 0.98467 0.99040 1.21473 0.95353 0.98491 0.98083 1.17766 0.91967 0.88711 0.96678 0.95369 1.21062 0.96642 1.28507 1.06553 0.93701 1.25462 1.00202 0.95820 0.96354 1.70018 1.26220 1.36163 1.24123 0.85909 0.79406 0.78708 0.79827 1.20421 1.21129 1.19202 0.90656 0.90457 0.90663 0.83956 0.85227 0.92600 0.92438 0.93443 0.88898 0.90506 0.93536 0.90504 0.95080 0.94051 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 9.52 71.24 0.68 -1.68 16 2 C -0.11 -3.46 5.89 -19.77 -0.12 -3.57 16 3 C -0.14 -4.26 9.68 22.20 0.22 -4.04 16 4 C -0.14 -4.96 9.66 22.20 0.21 -4.75 16 5 C -0.10 -4.27 5.72 -19.78 -0.11 -4.38 16 6 C -0.08 -3.75 8.07 71.23 0.57 -3.17 16 7 C -0.07 -3.18 5.42 -19.86 -0.11 -3.28 16 8 C -0.11 -4.02 5.74 -19.86 -0.11 -4.13 16 9 C -0.07 -2.13 4.98 29.74 0.15 -1.98 16 10 C -0.12 -4.19 5.98 30.62 0.18 -4.01 16 11 C -0.10 -4.37 5.23 30.62 0.16 -4.21 16 12 C 0.07 3.41 1.71 -12.40 -0.02 3.39 16 13 H 0.03 1.65 7.29 -2.39 -0.02 1.64 16 14 C -0.49 -26.43 4.45 25.60 0.11 -26.32 16 15 H 0.04 2.47 6.97 -2.92 -0.02 2.45 16 16 C 0.02 1.07 4.91 84.66 0.42 1.48 16 17 N -0.92 -53.72 12.81 21.45 0.27 -53.44 16 18 Si 0.94 43.69 29.54 68.60 2.03 45.72 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 23 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 24 H 0.07 1.52 5.94 -2.39 -0.01 1.50 16 25 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 26 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 27 H 0.06 2.59 6.63 -2.39 -0.02 2.58 16 28 H 0.06 2.97 5.91 -2.39 -0.01 2.95 16 29 H 0.05 1.81 8.04 -2.39 -0.02 1.79 16 30 H 0.09 2.39 6.27 -2.38 -0.01 2.38 16 31 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.04 1.86 8.08 -2.39 -0.02 1.84 16 36 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -61.19 278.93 5.58 -55.60 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.05 Total: 12.79 kcal Atomic # 6 Polarization: -62.89 SS G_CDS: 2.23 Total: -60.66 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.27 Total: -53.44 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -61.19 5.58 -55.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.690 kcal (2) G-P(sol) polarization free energy of solvation -61.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds