Wall clock time and date at job start Mon Mar 30 2020 03:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37974 * 119.72975 * 2 1 4 4 C 1.38214 * 119.77275 * 179.68232 * 3 2 1 5 5 C 1.37978 * 119.77570 * 359.86250 * 4 3 2 6 6 C 1.50699 * 119.73003 * 180.08191 * 5 4 3 7 7 C 1.38868 * 120.53904 * 0.10264 * 5 4 3 8 8 C 1.37698 * 119.68776 * 0.11179 * 7 5 4 9 9 C 1.50635 * 122.55819 * 179.29968 * 8 7 5 10 10 C 1.52738 * 110.57468 * 17.93484 * 9 8 7 11 11 C 1.53314 * 108.39289 * 308.84251 * 10 9 8 12 12 C 1.50635 * 117.75221 * 180.32017 * 7 5 4 13 13 H 1.08995 * 109.25395 * 77.41877 * 12 7 5 14 14 C 1.50693 * 109.25748 * 317.94959 * 12 7 5 15 15 H 1.08008 * 119.99874 * 354.36519 * 14 12 7 16 16 C 1.37876 * 120.00677 * 174.36332 * 14 12 7 17 17 N 1.31510 * 120.00478 * 179.97438 * 16 14 12 18 18 Si 1.86799 * 119.99356 * 0.02562 * 16 14 12 19 19 H 1.48496 * 109.47303 * 90.00220 * 18 16 14 20 20 H 1.48502 * 109.47058 * 209.99874 * 18 16 14 21 21 H 1.48500 * 109.47409 * 329.99822 * 18 16 14 22 22 H 1.08995 * 109.47009 * 89.99988 * 1 2 3 23 23 H 1.09003 * 109.47060 * 210.00010 * 1 2 3 24 24 H 1.09002 * 109.47236 * 329.99505 * 1 2 3 25 25 H 1.08002 * 120.11192 * 359.66310 * 3 2 1 26 26 H 1.08006 * 120.11512 * 179.88335 * 4 3 2 27 27 H 1.08997 * 109.47252 * 46.72084 * 6 5 4 28 28 H 1.09009 * 109.47050 * 166.71789 * 6 5 4 29 29 H 1.08997 * 109.47093 * 286.71610 * 6 5 4 30 30 H 1.08999 * 109.26841 * 257.64651 * 9 8 7 31 31 H 1.09002 * 109.21276 * 138.19200 * 9 8 7 32 32 H 1.09001 * 109.67492 * 189.11384 * 10 9 8 33 33 H 1.09007 * 109.70915 * 68.58602 * 10 9 8 34 34 H 1.09000 * 109.67728 * 310.13138 * 11 10 9 35 35 H 1.09000 * 109.70945 * 189.60054 * 11 10 9 36 36 H 0.96996 * 120.00142 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1981 0.0000 4 6 3.5733 1.1992 0.0067 5 6 4.2594 0.0021 0.0161 6 6 5.7664 0.0044 0.0252 7 6 3.5726 -1.2048 0.0169 8 6 2.1956 -1.2060 0.0058 9 6 1.3861 -2.4762 -0.0096 10 6 2.2414 -3.6631 0.4293 11 6 3.5307 -3.6633 -0.4002 12 6 4.3842 -2.4737 0.0349 13 1 4.7554 -2.6487 1.0447 14 6 5.5525 -2.3298 -0.9059 15 1 5.6410 -1.4502 -1.5264 16 6 6.5086 -3.3209 -0.9747 17 7 7.5279 -3.1955 -1.7961 18 14 6.3551 -4.8424 0.0981 19 1 5.5816 -5.8828 -0.6261 20 1 7.7092 -5.3633 0.4148 21 1 5.6527 -4.4909 1.3583 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.6486 2.1320 -0.0055 26 1 4.1145 2.1338 0.0048 27 1 6.1241 0.7128 0.7724 28 1 6.1298 -0.9942 0.2680 29 1 6.1352 0.2962 -0.9581 30 1 1.0153 -2.6542 -1.0190 31 1 0.5408 -2.3712 0.6705 32 1 1.6956 -4.5913 0.2599 33 1 2.4857 -3.5689 1.4875 34 1 3.2863 -3.5721 -1.4585 35 1 4.0782 -4.5901 -0.2285 36 1 8.2003 -3.8929 -1.8447 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084363552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:42 Heat of formation + Delta-G solvation = 11.541191 kcal Electronic energy + Delta-G solvation = -16478.302749 eV Core-core repulsion = 14119.512785 eV Total energy + Delta-G solvation = -2358.789964 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.74486 -35.73606 -34.54798 -32.18156 -29.72042 -29.45225 -28.50655 -25.12470 -23.85928 -22.22888 -21.78931 -19.17094 -18.58638 -16.92817 -15.60274 -14.82466 -14.50301 -14.34523 -13.69694 -13.29758 -13.09635 -12.97208 -12.56422 -12.18315 -12.07413 -11.79988 -11.61500 -11.54063 -11.18559 -10.91484 -10.74443 -10.52458 -10.31160 -10.00860 -9.86309 -9.74131 -9.19353 -8.97596 -8.44638 -7.79671 -7.51137 -6.09198 -4.01115 2.04212 2.14722 3.26003 3.36856 3.37490 4.38729 4.41267 5.17310 5.25058 5.32034 5.47030 5.48320 5.58968 5.73429 5.85078 5.87390 5.99693 6.04823 6.17406 6.20508 6.26595 6.37856 6.45841 6.51535 6.63484 6.70945 6.82617 6.86798 6.90515 6.99856 7.15889 7.26550 7.39454 7.55499 7.62739 7.75304 7.93356 8.51872 8.94790 9.49492 11.02157 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029632 B = 0.010725 C = 0.008344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.705732 B = 2610.048026 C = 3355.076700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.109 4.109 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.065 4.065 6 C -0.129 4.129 7 C -0.030 4.030 8 C -0.088 4.088 9 C -0.072 4.072 10 C -0.124 4.124 11 C -0.118 4.118 12 C 0.042 3.958 13 H 0.042 0.958 14 C -0.503 4.503 15 H 0.089 0.911 16 C 0.069 3.931 17 N -0.897 5.897 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.295 1.295 21 H -0.264 1.264 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.030 0.970 28 H 0.127 0.873 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.753 3.501 4.616 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.109 4.109 3 C -0.154 4.154 4 C -0.153 4.153 5 C -0.065 4.065 6 C -0.185 4.185 7 C -0.030 4.030 8 C -0.088 4.088 9 C -0.109 4.109 10 C -0.162 4.162 11 C -0.156 4.156 12 C 0.023 3.977 13 H 0.060 0.940 14 C -0.541 4.541 15 H 0.107 0.893 16 C -0.133 4.133 17 N -0.535 5.535 18 Si 0.706 3.294 19 H -0.205 1.205 20 H -0.223 1.223 21 H -0.189 1.189 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.126 0.874 26 H 0.128 0.872 27 H 0.049 0.951 28 H 0.145 0.855 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.579 3.420 4.544 12.011 hybrid contribution -0.011 -0.732 0.352 0.812 sum -10.590 2.688 4.896 11.973 Atomic orbital electron populations 1.20773 0.92406 1.01915 1.01534 1.19688 0.95104 0.92943 1.03194 1.20663 0.94212 0.96566 1.03935 1.20886 0.93961 0.97472 1.02978 1.20055 0.97053 0.91856 0.97526 1.21625 0.90605 1.06099 1.00138 1.19829 0.91794 0.95885 0.95519 1.19440 0.93281 0.93808 1.02318 1.20413 0.97035 0.92408 1.00997 1.21643 0.97486 0.96782 1.00265 1.21939 0.94614 0.99252 0.99748 1.18257 0.93453 0.88193 0.97783 0.94024 1.21175 1.04273 1.06663 1.21946 0.89328 1.24953 0.95373 0.97721 0.95247 1.69873 1.12190 1.34339 1.37058 0.86978 0.76485 0.84080 0.81905 1.20475 1.22277 1.18902 0.91974 0.91707 0.92491 0.87391 0.87174 0.95149 0.85530 0.92055 0.91394 0.91671 0.92768 0.92391 0.91743 0.93361 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.52 36.00 0.34 -1.08 16 2 C -0.11 -1.85 5.89 -104.48 -0.61 -2.47 16 3 C -0.14 -2.28 9.68 -39.69 -0.38 -2.66 16 4 C -0.13 -2.47 9.72 -39.69 -0.39 -2.86 16 5 C -0.06 -1.36 5.61 -104.48 -0.59 -1.94 16 6 C -0.13 -2.74 8.10 36.00 0.29 -2.45 16 7 C -0.03 -0.65 5.42 -104.62 -0.57 -1.22 16 8 C -0.09 -1.67 5.74 -104.61 -0.60 -2.27 16 9 C -0.07 -1.17 4.99 -28.05 -0.14 -1.31 16 10 C -0.12 -2.16 5.98 -26.70 -0.16 -2.32 16 11 C -0.12 -2.51 4.71 -26.70 -0.13 -2.63 16 12 C 0.04 0.96 1.28 -93.09 -0.12 0.84 16 13 H 0.04 1.00 6.83 -51.93 -0.35 0.64 16 14 C -0.50 -13.27 5.77 -34.44 -0.20 -13.46 16 15 H 0.09 2.53 5.68 -52.48 -0.30 2.23 16 16 C 0.07 1.88 5.45 -17.82 -0.10 1.79 16 17 N -0.90 -26.28 13.96 55.43 0.77 -25.51 16 18 Si 0.88 21.08 24.54 -169.99 -4.17 16.91 16 19 H -0.28 -6.60 6.94 56.52 0.39 -6.21 16 20 H -0.30 -7.19 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.10 6.40 56.52 0.36 -5.74 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.78 5.94 -51.93 -0.31 0.47 16 24 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 25 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.13 3.03 4.55 -51.92 -0.24 2.79 16 29 H 0.06 1.35 7.50 -51.93 -0.39 0.96 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.91 6.26 -51.93 -0.32 0.59 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.00 8.10 -51.92 -0.42 0.58 16 34 H 0.06 1.41 8.08 -51.93 -0.42 0.99 16 35 H 0.05 1.06 4.08 -51.93 -0.21 0.84 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 268.89 15.07 4.05 4.05 Total: -1.00 -28.26 268.89 -7.79 -36.06 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.10 Total: 2.54 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: -3.34 Total: -34.06 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.77 Total: -25.51 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.17 Total: 16.91 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.26 -7.79 -36.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.599 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds