Wall clock time and date at job start Mon Mar 30 2020 03:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37974 * 119.72975 * 2 1 4 4 C 1.38214 * 119.77275 * 179.68232 * 3 2 1 5 5 C 1.37978 * 119.77570 * 359.86250 * 4 3 2 6 6 C 1.50699 * 119.73003 * 180.08191 * 5 4 3 7 7 C 1.38868 * 120.53904 * 0.10264 * 5 4 3 8 8 C 1.37698 * 119.68776 * 0.11179 * 7 5 4 9 9 C 1.50635 * 122.55819 * 179.29968 * 8 7 5 10 10 C 1.52738 * 110.57468 * 17.93484 * 9 8 7 11 11 C 1.53314 * 108.39289 * 308.84251 * 10 9 8 12 12 C 1.50635 * 117.75221 * 180.32017 * 7 5 4 13 13 H 1.08995 * 109.25395 * 77.41877 * 12 7 5 14 14 C 1.50693 * 109.25748 * 317.94959 * 12 7 5 15 15 H 1.08008 * 119.99874 * 354.36519 * 14 12 7 16 16 C 1.37876 * 120.00677 * 174.36332 * 14 12 7 17 17 N 1.31510 * 120.00478 * 179.97438 * 16 14 12 18 18 Si 1.86799 * 119.99356 * 0.02562 * 16 14 12 19 19 H 1.48496 * 109.47303 * 90.00220 * 18 16 14 20 20 H 1.48502 * 109.47058 * 209.99874 * 18 16 14 21 21 H 1.48500 * 109.47409 * 329.99822 * 18 16 14 22 22 H 1.08995 * 109.47009 * 89.99988 * 1 2 3 23 23 H 1.09003 * 109.47060 * 210.00010 * 1 2 3 24 24 H 1.09002 * 109.47236 * 329.99505 * 1 2 3 25 25 H 1.08002 * 120.11192 * 359.66310 * 3 2 1 26 26 H 1.08006 * 120.11512 * 179.88335 * 4 3 2 27 27 H 1.08997 * 109.47252 * 46.72084 * 6 5 4 28 28 H 1.09009 * 109.47050 * 166.71789 * 6 5 4 29 29 H 1.08997 * 109.47093 * 286.71610 * 6 5 4 30 30 H 1.08999 * 109.26841 * 257.64651 * 9 8 7 31 31 H 1.09002 * 109.21276 * 138.19200 * 9 8 7 32 32 H 1.09001 * 109.67492 * 189.11384 * 10 9 8 33 33 H 1.09007 * 109.70915 * 68.58602 * 10 9 8 34 34 H 1.09000 * 109.67728 * 310.13138 * 11 10 9 35 35 H 1.09000 * 109.70945 * 189.60054 * 11 10 9 36 36 H 0.96996 * 120.00142 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1981 0.0000 4 6 3.5733 1.1992 0.0067 5 6 4.2594 0.0021 0.0161 6 6 5.7664 0.0044 0.0252 7 6 3.5726 -1.2048 0.0169 8 6 2.1956 -1.2060 0.0058 9 6 1.3861 -2.4762 -0.0096 10 6 2.2414 -3.6631 0.4293 11 6 3.5307 -3.6633 -0.4002 12 6 4.3842 -2.4737 0.0349 13 1 4.7554 -2.6487 1.0447 14 6 5.5525 -2.3298 -0.9059 15 1 5.6410 -1.4502 -1.5264 16 6 6.5086 -3.3209 -0.9747 17 7 7.5279 -3.1955 -1.7961 18 14 6.3551 -4.8424 0.0981 19 1 5.5816 -5.8828 -0.6261 20 1 7.7092 -5.3633 0.4148 21 1 5.6527 -4.4909 1.3583 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.6486 2.1320 -0.0055 26 1 4.1145 2.1338 0.0048 27 1 6.1241 0.7128 0.7724 28 1 6.1298 -0.9942 0.2680 29 1 6.1352 0.2962 -0.9581 30 1 1.0153 -2.6542 -1.0190 31 1 0.5408 -2.3712 0.6705 32 1 1.6956 -4.5913 0.2599 33 1 2.4857 -3.5689 1.4875 34 1 3.2863 -3.5721 -1.4585 35 1 4.0782 -4.5901 -0.2285 36 1 8.2003 -3.8929 -1.8447 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:41 Heat of formation + Delta-G solvation = -3.439768 kcal Electronic energy + Delta-G solvation = -16478.952372 eV Core-core repulsion = 14119.512785 eV Total energy + Delta-G solvation = -2359.439587 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.21542 -37.28018 -36.06598 -34.08461 -31.17650 -31.04230 -29.95976 -26.83558 -25.28192 -23.78479 -23.42036 -20.63648 -20.10198 -18.94116 -17.14867 -16.32860 -16.08505 -15.95219 -15.01333 -14.99734 -14.72336 -14.56521 -13.90531 -13.78803 -13.39463 -13.28639 -13.13820 -13.03349 -12.85272 -12.48985 -12.40717 -12.01108 -11.85571 -11.68510 -11.61766 -11.33162 -10.92591 -10.81979 -10.45822 -9.23416 -8.99758 -8.22458 -6.15662 0.62000 0.69698 1.31420 1.36403 1.45414 2.35840 2.94812 3.12418 3.91439 3.95498 4.18132 4.21163 4.23497 4.42130 4.54049 4.55622 4.62783 4.74698 4.83473 4.89167 4.93741 4.96675 5.03729 5.05090 5.11772 5.19386 5.23075 5.34185 5.41855 5.48974 5.57162 5.70274 5.77302 5.83463 5.91723 6.14098 6.32392 6.52164 6.80188 7.36531 8.92492 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029632 B = 0.010725 C = 0.008344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.705732 B = 2610.048026 C = 3355.076700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.097 4.097 6 C -0.116 4.116 7 C -0.066 4.066 8 C -0.099 4.099 9 C -0.070 4.070 10 C -0.119 4.119 11 C -0.119 4.119 12 C 0.044 3.956 13 H 0.029 0.971 14 C -0.487 4.487 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.947 5.947 18 Si 0.932 3.068 19 H -0.269 1.269 20 H -0.300 1.300 21 H -0.249 1.249 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.144 0.856 26 H 0.128 0.872 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.039 0.961 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.434 3.806 5.929 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.107 4.107 3 C -0.150 4.150 4 C -0.157 4.157 5 C -0.097 4.097 6 C -0.172 4.172 7 C -0.066 4.066 8 C -0.099 4.099 9 C -0.106 4.106 10 C -0.156 4.156 11 C -0.157 4.157 12 C 0.025 3.975 13 H 0.046 0.954 14 C -0.525 4.525 15 H 0.071 0.929 16 C -0.184 4.184 17 N -0.588 5.588 18 Si 0.760 3.240 19 H -0.195 1.195 20 H -0.227 1.227 21 H -0.173 1.173 22 H 0.093 0.907 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.161 0.839 26 H 0.146 0.854 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.288 3.729 5.869 15.890 hybrid contribution 1.094 -0.660 -0.084 1.280 sum -13.193 3.070 5.786 14.730 Atomic orbital electron populations 1.20849 0.88973 1.03722 1.02822 1.20196 0.97557 0.92035 1.00944 1.21113 0.93567 0.98271 1.02034 1.21116 0.95160 0.97047 1.02412 1.20119 0.96391 0.93262 0.99967 1.21318 0.92059 1.04414 0.99441 1.19840 0.93344 0.94977 0.98403 1.19791 0.92348 0.96127 1.01644 1.20496 0.97282 0.90448 1.02402 1.21618 0.95657 0.98948 0.99382 1.21838 0.96531 0.97549 0.99732 1.18132 0.92930 0.90575 0.95850 0.95361 1.21328 1.05381 1.04805 1.21025 0.92928 1.25667 0.95181 1.00845 0.96743 1.70017 1.13544 1.35604 1.39668 0.86052 0.76331 0.80713 0.80937 1.19451 1.22725 1.17307 0.90744 0.90322 0.90384 0.83851 0.85425 0.93033 0.88857 0.94171 0.90459 0.88270 0.89810 0.92260 0.93101 0.94255 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.52 71.24 0.68 -1.51 16 2 C -0.11 -3.22 5.89 -19.77 -0.12 -3.34 16 3 C -0.13 -3.97 9.68 22.20 0.22 -3.76 16 4 C -0.14 -4.90 9.72 22.20 0.22 -4.69 16 5 C -0.10 -4.13 5.61 -19.78 -0.11 -4.24 16 6 C -0.12 -5.22 8.10 71.24 0.58 -4.64 16 7 C -0.07 -2.83 5.42 -19.86 -0.11 -2.93 16 8 C -0.10 -3.51 5.74 -19.86 -0.11 -3.63 16 9 C -0.07 -2.01 4.99 29.74 0.15 -1.86 16 10 C -0.12 -3.77 5.98 30.61 0.18 -3.58 16 11 C -0.12 -4.97 4.71 30.61 0.14 -4.83 16 12 C 0.04 2.05 1.28 -12.40 -0.02 2.04 16 13 H 0.03 1.39 6.83 -2.39 -0.02 1.38 16 14 C -0.49 -27.06 5.77 25.60 0.15 -26.91 16 15 H 0.05 3.23 5.68 -2.91 -0.02 3.21 16 16 C 0.01 0.69 5.45 84.66 0.46 1.15 16 17 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 18 Si 0.93 44.60 24.54 68.60 1.68 46.29 16 19 H -0.27 -12.33 6.94 99.48 0.69 -11.64 16 20 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 21 H -0.25 -11.16 6.40 99.48 0.64 -10.52 16 22 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.08 1.41 5.94 -2.39 -0.01 1.40 16 24 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 25 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 26 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 28 H 0.09 4.78 4.55 -2.38 -0.01 4.77 16 29 H 0.04 1.90 7.50 -2.39 -0.02 1.88 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.10 2.21 6.26 -2.39 -0.01 2.20 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.06 1.87 8.10 -2.38 -0.02 1.85 16 34 H 0.05 2.22 8.08 -2.39 -0.02 2.20 16 35 H 0.04 1.68 4.08 -2.39 -0.01 1.67 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -64.63 268.89 5.27 -59.36 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.98 Total: 15.33 kcal Atomic # 6 Polarization: -65.04 SS G_CDS: 2.31 Total: -62.73 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.30 Total: -58.25 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.68 Total: 46.29 kcal Total: -64.63 5.27 -59.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.924 kcal (2) G-P(sol) polarization free energy of solvation -64.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds