Wall clock time and date at job start Mon Mar 30 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38270 * 120.11814 * 2 1 4 4 C 1.37924 * 119.77262 * 180.14940 * 3 2 1 5 5 C 1.50706 * 119.72615 * 179.97438 * 4 3 2 6 6 C 1.38912 * 120.54651 * 0.02562 * 4 3 2 7 7 C 1.37664 * 119.68466 * 359.73148 * 6 4 3 8 8 C 1.37932 * 120.11284 * 180.02562 * 2 1 3 9 9 C 1.50628 * 122.55724 * 180.72649 * 7 6 4 10 10 H 1.09007 * 109.25237 * 102.25387 * 9 7 6 11 11 C 1.50693 * 109.25657 * 221.68260 * 9 7 6 12 12 H 1.08010 * 119.99436 * 0.02562 * 11 9 7 13 13 C 1.37876 * 120.00422 * 179.97438 * 11 9 7 14 14 N 1.31513 * 119.99980 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00060 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47098 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47175 * 120.00021 * 15 13 11 18 18 H 1.48505 * 109.46623 * 239.99645 * 15 13 11 19 19 C 1.52739 * 110.58552 * 341.97183 * 9 7 6 20 20 C 1.53320 * 108.39604 * 51.15879 * 19 9 7 21 21 C 1.50631 * 117.75561 * 179.39814 * 6 4 3 22 22 H 1.08995 * 109.47235 * 269.97619 * 1 2 3 23 23 H 1.09005 * 109.47037 * 29.97763 * 1 2 3 24 24 H 1.08995 * 109.47369 * 149.97272 * 1 2 3 25 25 H 1.07996 * 120.10952 * 0.17393 * 3 2 1 26 26 H 1.09000 * 109.47019 * 89.99970 * 5 4 3 27 27 H 1.09006 * 109.46902 * 209.99694 * 5 4 3 28 28 H 1.09000 * 109.47156 * 329.99736 * 5 4 3 29 29 H 1.07999 * 119.72681 * 359.97438 * 8 2 1 30 30 H 0.96997 * 120.00461 * 180.02562 * 14 13 11 31 31 H 1.08994 * 109.67819 * 291.42920 * 19 9 7 32 32 H 1.09001 * 109.67869 * 170.88492 * 19 9 7 33 33 H 1.08994 * 109.67966 * 170.46084 * 20 19 9 34 34 H 1.08994 * 109.71091 * 49.92997 * 20 19 9 35 35 H 1.09002 * 109.24847 * 282.62971 * 21 6 4 36 36 H 1.08995 * 109.25639 * 42.05637 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2008 1.1960 0.0000 4 6 3.5800 1.1877 -0.0031 5 6 4.3351 2.4919 -0.0037 6 6 4.2787 -0.0129 -0.0068 7 6 3.5881 -1.2037 -0.0017 8 6 2.1990 -1.1932 -0.0005 9 6 4.2796 -2.5418 0.0108 10 1 4.2459 -2.9544 1.0192 11 6 3.5683 -3.4777 -0.9321 12 1 2.7045 -3.1356 -1.4830 13 6 4.0207 -4.7702 -1.0923 14 7 5.0734 -5.1862 -0.4227 15 14 3.1393 -5.9300 -2.2617 16 1 1.9935 -5.2239 -2.8892 17 1 4.0823 -6.3798 -3.3170 18 1 2.6412 -7.1086 -1.5079 19 6 5.7361 -2.3977 -0.4259 20 6 6.3833 -1.2854 0.4074 21 6 5.7836 0.0514 -0.0241 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8897 -0.5142 25 1 1.6645 2.1334 0.0028 26 1 4.5195 2.8054 1.0238 27 1 5.2863 2.3608 -0.5198 28 1 3.7459 3.2527 -0.5156 29 1 1.6563 -2.1270 -0.0005 30 1 5.3919 -6.0954 -0.5357 31 1 5.7781 -2.1360 -1.4832 32 1 6.2641 -3.3364 -0.2584 33 1 7.4597 -1.2772 0.2359 34 1 6.1816 -1.4538 1.4652 35 1 6.1216 0.2880 -1.0330 36 1 6.1179 0.8325 0.6587 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084363558.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:30 Heat of formation + Delta-G solvation = -10.577347 kcal Electronic energy + Delta-G solvation = -16123.815898 eV Core-core repulsion = 13764.066802 eV Total energy + Delta-G solvation = -2359.749096 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.47773 -35.73634 -33.87154 -32.13352 -30.77817 -28.72642 -27.09973 -25.63626 -24.64434 -22.02995 -21.11304 -19.75528 -18.07716 -16.28081 -15.42694 -14.93058 -14.62122 -14.08265 -13.59048 -13.07375 -12.93563 -12.80370 -12.55172 -12.46693 -12.06618 -11.74156 -11.53195 -11.45121 -11.29956 -10.96239 -10.63052 -10.49074 -10.35435 -10.23490 -9.90118 -9.59248 -9.16535 -8.74533 -8.37260 -7.68978 -7.53837 -6.00075 -4.05666 2.08454 2.22108 3.28931 3.37269 3.41562 4.39208 4.50978 5.28811 5.30245 5.37097 5.54084 5.64260 5.74819 5.76381 5.86009 5.89650 5.94883 5.98319 6.15047 6.19959 6.27323 6.36860 6.45726 6.52998 6.66517 6.85486 6.86948 6.95352 7.17554 7.19136 7.30931 7.36692 7.64890 7.73943 7.87251 7.96327 8.14291 8.42290 8.96628 9.58353 11.05598 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.024727 B = 0.009634 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.106862 B = 2905.745772 C = 3840.528700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.103 4.103 3 C -0.144 4.144 4 C -0.098 4.098 5 C -0.109 4.109 6 C -0.096 4.096 7 C -0.025 4.025 8 C -0.113 4.113 9 C 0.075 3.925 10 H 0.041 0.959 11 C -0.508 4.508 12 H 0.060 0.940 13 C 0.061 3.939 14 N -0.889 5.889 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.104 4.104 20 C -0.124 4.124 21 C -0.071 4.071 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.125 0.875 30 H 0.259 0.741 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 10.610 1.319 10.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.103 4.103 3 C -0.162 4.162 4 C -0.098 4.098 5 C -0.165 4.165 6 C -0.096 4.096 7 C -0.025 4.025 8 C -0.131 4.131 9 C 0.057 3.943 10 H 0.058 0.942 11 C -0.546 4.546 12 H 0.078 0.922 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.142 4.142 20 C -0.161 4.161 21 C -0.108 4.108 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.143 0.857 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.086 10.453 1.337 10.743 hybrid contribution -0.492 -0.676 -0.684 1.080 sum -2.578 9.777 0.653 10.132 Atomic orbital electron populations 1.20688 0.92253 1.01929 1.01440 1.19773 0.95283 0.93575 1.01627 1.20512 0.93317 0.96744 1.05657 1.19745 0.93610 0.94461 1.01961 1.20748 0.99889 0.94475 1.01413 1.19510 0.95233 0.92028 1.02838 1.20378 0.93460 0.95894 0.92782 1.21228 0.94411 0.97028 1.00445 1.17770 0.91787 0.87138 0.97559 0.94155 1.21268 1.13076 0.95629 1.24598 0.92186 1.24961 0.95063 0.98067 0.95889 1.69898 1.23886 1.17377 1.41681 0.86551 0.79769 0.80905 0.80921 1.19773 1.21054 1.21051 1.21593 0.97983 0.97662 0.96989 1.21682 0.98396 0.95597 1.00452 1.20396 0.91665 0.98213 1.00486 0.92011 0.92485 0.91868 0.87542 0.92007 0.91762 0.92472 0.85720 0.93059 0.94162 0.89044 0.93355 0.92800 0.91844 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.02 36.00 0.36 -1.17 16 2 C -0.10 -1.86 5.87 -104.72 -0.61 -2.48 16 3 C -0.14 -2.48 9.35 -39.68 -0.37 -2.85 16 4 C -0.10 -1.72 5.89 -104.48 -0.61 -2.34 16 5 C -0.11 -1.48 9.15 36.01 0.33 -1.15 16 6 C -0.10 -1.92 5.74 -104.62 -0.60 -2.52 16 7 C -0.03 -0.57 5.42 -104.62 -0.57 -1.13 16 8 C -0.11 -2.40 8.35 -39.44 -0.33 -2.73 16 9 C 0.08 1.89 2.18 -93.10 -0.20 1.69 16 10 H 0.04 1.11 8.14 -51.92 -0.42 0.68 16 11 C -0.51 -13.76 7.75 -34.44 -0.27 -14.03 16 12 H 0.06 1.63 6.65 -52.48 -0.35 1.28 16 13 C 0.06 1.68 5.29 -17.82 -0.09 1.58 16 14 N -0.89 -24.99 11.34 55.43 0.63 -24.36 16 15 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C -0.10 -2.47 4.86 -26.70 -0.13 -2.60 16 20 C -0.12 -2.41 5.98 -26.70 -0.16 -2.57 16 21 C -0.07 -1.26 4.46 -28.05 -0.13 -1.39 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 24 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 25 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.84 6.69 -51.93 -0.35 0.49 16 28 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.12 2.71 6.99 -52.49 -0.37 2.35 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.04 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.09 2.37 6.28 -51.93 -0.33 2.05 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 36 H 0.06 0.90 7.16 -51.93 -0.37 0.53 16 LS Contribution 283.74 15.07 4.28 4.28 Total: -1.00 -28.11 283.74 -9.03 -37.15 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.53 Total: 0.45 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: -3.39 Total: -33.68 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.63 Total: -24.36 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.11 -9.03 -37.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363558.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.571 kcal (2) G-P(sol) polarization free energy of solvation -28.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds